Experiment: m.b. Vancomycin 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c18810 and PGA1_c18820 are separated by 14 nucleotides PGA1_c18820 and PGA1_c18830 are separated by 245 nucleotides
PGA1_c18810: PGA1_c18810 - putative lipid A biosynthesis acyltransferase, at 1,953,246 to 1,954,181
_c18810
PGA1_c18820: PGA1_c18820 - Uncharacterized secreted protein, at 1,954,196 to 1,954,927
_c18820
PGA1_c18830: PGA1_c18830 - aconitate hydratase AcnA, at 1,955,173 to 1,957,860
_c18830
Position (kb)
1954
1955 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1953.660 kb on + strand, within PGA1_c18810 at 1954.296 kb on - strand, within PGA1_c18820 at 1954.303 kb on + strand, within PGA1_c18820 at 1954.450 kb on - strand, within PGA1_c18820 at 1954.623 kb on + strand, within PGA1_c18820 at 1954.623 kb on + strand, within PGA1_c18820 at 1954.623 kb on + strand, within PGA1_c18820 at 1954.631 kb on - strand, within PGA1_c18820 at 1954.652 kb on + strand, within PGA1_c18820 at 1954.660 kb on - strand, within PGA1_c18820 at 1954.733 kb on - strand, within PGA1_c18820 at 1954.797 kb on + strand, within PGA1_c18820 at 1954.843 kb on - strand, within PGA1_c18820 at 1954.859 kb on + strand at 1954.867 kb on - strand at 1954.949 kb on + strand at 1954.971 kb on + strand at 1954.971 kb on + strand at 1954.971 kb on + strand at 1954.979 kb on - strand at 1954.979 kb on - strand at 1954.979 kb on - strand at 1955.005 kb on + strand at 1955.005 kb on + strand at 1955.005 kb on + strand at 1955.005 kb on + strand at 1955.013 kb on - strand at 1955.013 kb on - strand at 1955.023 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.032 mg/ml remove 1,953,660 + PGA1_c18810 0.44 -0.8 1,954,296 - PGA1_c18820 0.14 -1.8 1,954,303 + PGA1_c18820 0.15 +1.7 1,954,450 - PGA1_c18820 0.35 +1.3 1,954,623 + PGA1_c18820 0.58 +1.1 1,954,623 + PGA1_c18820 0.58 +1.9 1,954,623 + PGA1_c18820 0.58 +0.5 1,954,631 - PGA1_c18820 0.59 +0.8 1,954,652 + PGA1_c18820 0.62 +0.8 1,954,660 - PGA1_c18820 0.63 +0.2 1,954,733 - PGA1_c18820 0.73 -1.0 1,954,797 + PGA1_c18820 0.82 -2.0 1,954,843 - PGA1_c18820 0.88 +1.1 1,954,859 + +0.8 1,954,867 - +1.1 1,954,949 + +1.4 1,954,971 + +2.5 1,954,971 + -1.0 1,954,971 + +0.9 1,954,979 - +1.0 1,954,979 - -1.0 1,954,979 - +1.5 1,955,005 + -0.2 1,955,005 + -0.1 1,955,005 + -1.7 1,955,005 + +0.8 1,955,013 - -0.2 1,955,013 - +0.3 1,955,023 - +0.2
Or see this region's nucleotide sequence