Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c16260

Experiment: m.b. Vancomycin 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c16240 and PGA1_c16250 are separated by 7 nucleotidesPGA1_c16250 and PGA1_c16260 are separated by 204 nucleotidesPGA1_c16260 and PGA1_c16270 are separated by 85 nucleotides PGA1_c16240: PGA1_c16240 - methylthioribose-1-phosphate isomerase MtnA, at 1,685,857 to 1,686,960 _c16240 PGA1_c16250: PGA1_c16250 - putative L-fuculose phosphate aldolase, at 1,686,968 to 1,687,639 _c16250 PGA1_c16260: PGA1_c16260 - putative membrane dipeptidase, at 1,687,844 to 1,688,914 _c16260 PGA1_c16270: PGA1_c16270 - putative periplasmic dipeptide transport protein, at 1,689,000 to 1,690,595 _c16270 Position (kb) 1687 1688 1689Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1686.850 kb on - strandat 1686.905 kb on + strandat 1686.918 kb on - strandat 1687.001 kb on - strandat 1687.016 kb on + strandat 1687.055 kb on - strand, within PGA1_c16250at 1687.176 kb on + strand, within PGA1_c16250at 1687.176 kb on + strand, within PGA1_c16250at 1687.181 kb on + strand, within PGA1_c16250at 1687.184 kb on - strand, within PGA1_c16250at 1687.198 kb on + strand, within PGA1_c16250at 1687.206 kb on - strand, within PGA1_c16250at 1687.256 kb on - strand, within PGA1_c16250at 1687.298 kb on - strand, within PGA1_c16250at 1687.319 kb on + strand, within PGA1_c16250at 1687.356 kb on + strand, within PGA1_c16250at 1687.395 kb on - strand, within PGA1_c16250at 1687.441 kb on + strand, within PGA1_c16250at 1687.562 kb on - strand, within PGA1_c16250at 1687.563 kb on + strand, within PGA1_c16250at 1687.563 kb on + strand, within PGA1_c16250at 1687.563 kb on + strand, within PGA1_c16250at 1687.571 kb on - strand, within PGA1_c16250at 1687.571 kb on - strand, within PGA1_c16250at 1687.583 kb on + strandat 1687.695 kb on + strandat 1687.717 kb on + strandat 1687.734 kb on + strandat 1687.734 kb on + strandat 1687.742 kb on - strandat 1687.742 kb on - strandat 1687.742 kb on - strandat 1687.754 kb on + strandat 1687.764 kb on + strandat 1687.767 kb on - strandat 1687.817 kb on + strandat 1688.058 kb on + strand, within PGA1_c16260at 1688.058 kb on + strand, within PGA1_c16260at 1688.058 kb on + strand, within PGA1_c16260at 1688.058 kb on + strand, within PGA1_c16260at 1688.058 kb on + strand, within PGA1_c16260at 1688.058 kb on + strand, within PGA1_c16260at 1688.058 kb on + strand, within PGA1_c16260at 1688.058 kb on + strand, within PGA1_c16260at 1688.058 kb on + strand, within PGA1_c16260at 1688.058 kb on + strand, within PGA1_c16260at 1688.058 kb on + strand, within PGA1_c16260at 1688.058 kb on + strand, within PGA1_c16260at 1688.058 kb on + strand, within PGA1_c16260at 1688.058 kb on + strand, within PGA1_c16260at 1688.058 kb on + strand, within PGA1_c16260at 1688.058 kb on + strand, within PGA1_c16260at 1688.058 kb on + strand, within PGA1_c16260at 1688.066 kb on - strand, within PGA1_c16260at 1688.066 kb on - strand, within PGA1_c16260at 1688.066 kb on - strand, within PGA1_c16260at 1688.066 kb on - strand, within PGA1_c16260at 1688.066 kb on - strand, within PGA1_c16260at 1688.066 kb on - strand, within PGA1_c16260at 1688.100 kb on - strand, within PGA1_c16260at 1688.234 kb on - strand, within PGA1_c16260at 1688.246 kb on - strand, within PGA1_c16260at 1688.276 kb on - strand, within PGA1_c16260at 1688.278 kb on + strand, within PGA1_c16260at 1688.291 kb on + strand, within PGA1_c16260at 1688.299 kb on - strand, within PGA1_c16260at 1688.299 kb on - strand, within PGA1_c16260at 1688.299 kb on - strand, within PGA1_c16260at 1688.309 kb on - strand, within PGA1_c16260at 1688.309 kb on - strand, within PGA1_c16260at 1688.309 kb on - strand, within PGA1_c16260at 1688.312 kb on + strand, within PGA1_c16260at 1688.312 kb on + strand, within PGA1_c16260at 1688.320 kb on - strand, within PGA1_c16260at 1688.320 kb on - strand, within PGA1_c16260at 1688.320 kb on - strand, within PGA1_c16260at 1688.320 kb on - strand, within PGA1_c16260at 1688.320 kb on - strand, within PGA1_c16260at 1688.331 kb on + strand, within PGA1_c16260at 1688.374 kb on - strand, within PGA1_c16260at 1688.488 kb on + strand, within PGA1_c16260at 1688.547 kb on + strand, within PGA1_c16260at 1688.603 kb on + strand, within PGA1_c16260at 1688.616 kb on - strand, within PGA1_c16260at 1688.677 kb on + strand, within PGA1_c16260at 1688.688 kb on + strand, within PGA1_c16260at 1688.756 kb on - strand, within PGA1_c16260at 1688.802 kb on + strand, within PGA1_c16260at 1688.810 kb on - strandat 1688.823 kb on + strandat 1688.883 kb on + strandat 1688.914 kb on - strandat 1688.932 kb on - strandat 1688.937 kb on - strandat 1688.949 kb on + strandat 1688.949 kb on + strandat 1688.949 kb on + strandat 1689.018 kb on + strandat 1689.052 kb on + strandat 1689.061 kb on - strandat 1689.168 kb on + strand, within PGA1_c16270at 1689.176 kb on - strand, within PGA1_c16270at 1689.202 kb on + strand, within PGA1_c16270at 1689.202 kb on + strand, within PGA1_c16270at 1689.202 kb on + strand, within PGA1_c16270at 1689.202 kb on + strand, within PGA1_c16270at 1689.202 kb on + strand, within PGA1_c16270at 1689.202 kb on + strand, within PGA1_c16270at 1689.202 kb on + strand, within PGA1_c16270at 1689.202 kb on + strand, within PGA1_c16270at 1689.202 kb on + strand, within PGA1_c16270at 1689.202 kb on + strand, within PGA1_c16270at 1689.205 kb on - strand, within PGA1_c16270at 1689.210 kb on - strand, within PGA1_c16270at 1689.210 kb on - strand, within PGA1_c16270at 1689.210 kb on - strand, within PGA1_c16270at 1689.210 kb on - strand, within PGA1_c16270at 1689.210 kb on - strand, within PGA1_c16270at 1689.210 kb on - strand, within PGA1_c16270at 1689.210 kb on - strand, within PGA1_c16270at 1689.210 kb on - strand, within PGA1_c16270at 1689.210 kb on - strand, within PGA1_c16270at 1689.210 kb on - strand, within PGA1_c16270at 1689.210 kb on - strand, within PGA1_c16270at 1689.210 kb on - strand, within PGA1_c16270at 1689.210 kb on - strand, within PGA1_c16270at 1689.211 kb on + strand, within PGA1_c16270at 1689.294 kb on - strand, within PGA1_c16270at 1689.311 kb on - strand, within PGA1_c16270at 1689.413 kb on - strand, within PGA1_c16270at 1689.415 kb on - strand, within PGA1_c16270at 1689.452 kb on + strand, within PGA1_c16270at 1689.460 kb on - strand, within PGA1_c16270at 1689.501 kb on + strand, within PGA1_c16270at 1689.501 kb on + strand, within PGA1_c16270at 1689.501 kb on + strand, within PGA1_c16270at 1689.501 kb on + strand, within PGA1_c16270at 1689.509 kb on - strand, within PGA1_c16270at 1689.509 kb on - strand, within PGA1_c16270at 1689.554 kb on - strand, within PGA1_c16270at 1689.612 kb on + strand, within PGA1_c16270at 1689.613 kb on + strand, within PGA1_c16270at 1689.655 kb on + strand, within PGA1_c16270at 1689.663 kb on - strand, within PGA1_c16270at 1689.787 kb on + strand, within PGA1_c16270at 1689.787 kb on + strand, within PGA1_c16270at 1689.829 kb on + strand, within PGA1_c16270at 1689.837 kb on - strand, within PGA1_c16270at 1689.858 kb on + strand, within PGA1_c16270at 1689.889 kb on + strand, within PGA1_c16270at 1689.897 kb on - strand, within PGA1_c16270at 1689.897 kb on - strand, within PGA1_c16270at 1689.899 kb on + strand, within PGA1_c16270at 1689.904 kb on + strand, within PGA1_c16270at 1689.906 kb on + strand, within PGA1_c16270at 1689.906 kb on + strand, within PGA1_c16270at 1689.906 kb on + strand, within PGA1_c16270at 1689.906 kb on + strand, within PGA1_c16270at 1689.906 kb on + strand, within PGA1_c16270at 1689.907 kb on - strand, within PGA1_c16270at 1689.907 kb on - strand, within PGA1_c16270at 1689.907 kb on - strand, within PGA1_c16270at 1689.907 kb on - strand, within PGA1_c16270at 1689.914 kb on - strand, within PGA1_c16270

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.032 mg/ml
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1,686,850 - +0.1
1,686,905 + -1.3
1,686,918 - -0.1
1,687,001 - +1.6
1,687,016 + -0.8
1,687,055 - PGA1_c16250 0.13 +0.3
1,687,176 + PGA1_c16250 0.31 -2.0
1,687,176 + PGA1_c16250 0.31 +1.3
1,687,181 + PGA1_c16250 0.32 +0.7
1,687,184 - PGA1_c16250 0.32 +0.0
1,687,198 + PGA1_c16250 0.34 +2.0
1,687,206 - PGA1_c16250 0.35 -2.0
1,687,256 - PGA1_c16250 0.43 -1.7
1,687,298 - PGA1_c16250 0.49 +1.2
1,687,319 + PGA1_c16250 0.52 -2.0
1,687,356 + PGA1_c16250 0.58 -2.1
1,687,395 - PGA1_c16250 0.64 +0.5
1,687,441 + PGA1_c16250 0.70 +0.7
1,687,562 - PGA1_c16250 0.88 +1.2
1,687,563 + PGA1_c16250 0.89 -1.2
1,687,563 + PGA1_c16250 0.89 +0.4
1,687,563 + PGA1_c16250 0.89 +1.3
1,687,571 - PGA1_c16250 0.90 +0.2
1,687,571 - PGA1_c16250 0.90 +1.3
1,687,583 + +1.0
1,687,695 + -0.7
1,687,717 + -0.7
1,687,734 + -0.1
1,687,734 + +0.0
1,687,742 - +0.6
1,687,742 - -1.5
1,687,742 - -0.0
1,687,754 + +0.7
1,687,764 + -1.8
1,687,767 - +2.1
1,687,817 + +2.0
1,688,058 + PGA1_c16260 0.20 -0.7
1,688,058 + PGA1_c16260 0.20 -0.7
1,688,058 + PGA1_c16260 0.20 +0.3
1,688,058 + PGA1_c16260 0.20 -2.6
1,688,058 + PGA1_c16260 0.20 -0.4
1,688,058 + PGA1_c16260 0.20 -1.7
1,688,058 + PGA1_c16260 0.20 +0.2
1,688,058 + PGA1_c16260 0.20 -0.4
1,688,058 + PGA1_c16260 0.20 -0.3
1,688,058 + PGA1_c16260 0.20 +0.4
1,688,058 + PGA1_c16260 0.20 +0.9
1,688,058 + PGA1_c16260 0.20 +0.2
1,688,058 + PGA1_c16260 0.20 -1.0
1,688,058 + PGA1_c16260 0.20 -1.5
1,688,058 + PGA1_c16260 0.20 +2.0
1,688,058 + PGA1_c16260 0.20 +1.3
1,688,058 + PGA1_c16260 0.20 +0.6
1,688,066 - PGA1_c16260 0.21 +1.0
1,688,066 - PGA1_c16260 0.21 +2.4
1,688,066 - PGA1_c16260 0.21 +0.3
1,688,066 - PGA1_c16260 0.21 +0.0
1,688,066 - PGA1_c16260 0.21 +0.3
1,688,066 - PGA1_c16260 0.21 -1.7
1,688,100 - PGA1_c16260 0.24 -1.0
1,688,234 - PGA1_c16260 0.36 +0.4
1,688,246 - PGA1_c16260 0.38 -0.1
1,688,276 - PGA1_c16260 0.40 +1.4
1,688,278 + PGA1_c16260 0.41 -0.2
1,688,291 + PGA1_c16260 0.42 +0.9
1,688,299 - PGA1_c16260 0.42 +2.5
1,688,299 - PGA1_c16260 0.42 -0.2
1,688,299 - PGA1_c16260 0.42 -1.0
1,688,309 - PGA1_c16260 0.43 +0.7
1,688,309 - PGA1_c16260 0.43 -0.9
1,688,309 - PGA1_c16260 0.43 +1.1
1,688,312 + PGA1_c16260 0.44 +0.3
1,688,312 + PGA1_c16260 0.44 +0.3
1,688,320 - PGA1_c16260 0.44 +0.9
1,688,320 - PGA1_c16260 0.44 +0.9
1,688,320 - PGA1_c16260 0.44 -0.3
1,688,320 - PGA1_c16260 0.44 +1.1
1,688,320 - PGA1_c16260 0.44 +0.4
1,688,331 + PGA1_c16260 0.45 +0.5
1,688,374 - PGA1_c16260 0.49 +0.8
1,688,488 + PGA1_c16260 0.60 +0.5
1,688,547 + PGA1_c16260 0.66 +0.9
1,688,603 + PGA1_c16260 0.71 +1.0
1,688,616 - PGA1_c16260 0.72 -2.0
1,688,677 + PGA1_c16260 0.78 -0.5
1,688,688 + PGA1_c16260 0.79 -0.1
1,688,756 - PGA1_c16260 0.85 -1.5
1,688,802 + PGA1_c16260 0.89 +0.6
1,688,810 - +1.0
1,688,823 + +1.4
1,688,883 + -0.1
1,688,914 - -1.7
1,688,932 - +1.1
1,688,937 - -0.5
1,688,949 + +1.6
1,688,949 + -1.5
1,688,949 + -0.6
1,689,018 + -1.7
1,689,052 + -0.1
1,689,061 - +1.6
1,689,168 + PGA1_c16270 0.11 +0.1
1,689,176 - PGA1_c16270 0.11 +0.3
1,689,202 + PGA1_c16270 0.13 +0.2
1,689,202 + PGA1_c16270 0.13 -1.1
1,689,202 + PGA1_c16270 0.13 -0.7
1,689,202 + PGA1_c16270 0.13 -1.3
1,689,202 + PGA1_c16270 0.13 +1.9
1,689,202 + PGA1_c16270 0.13 -0.4
1,689,202 + PGA1_c16270 0.13 +1.1
1,689,202 + PGA1_c16270 0.13 +0.4
1,689,202 + PGA1_c16270 0.13 -0.2
1,689,202 + PGA1_c16270 0.13 -1.0
1,689,205 - PGA1_c16270 0.13 +0.6
1,689,210 - PGA1_c16270 0.13 +2.4
1,689,210 - PGA1_c16270 0.13 -1.4
1,689,210 - PGA1_c16270 0.13 -0.8
1,689,210 - PGA1_c16270 0.13 +1.8
1,689,210 - PGA1_c16270 0.13 +1.8
1,689,210 - PGA1_c16270 0.13 -0.2
1,689,210 - PGA1_c16270 0.13 -0.3
1,689,210 - PGA1_c16270 0.13 -0.6
1,689,210 - PGA1_c16270 0.13 -0.7
1,689,210 - PGA1_c16270 0.13 +0.6
1,689,210 - PGA1_c16270 0.13 +0.5
1,689,210 - PGA1_c16270 0.13 -0.6
1,689,210 - PGA1_c16270 0.13 +1.1
1,689,211 + PGA1_c16270 0.13 +0.9
1,689,294 - PGA1_c16270 0.18 +1.6
1,689,311 - PGA1_c16270 0.19 +2.0
1,689,413 - PGA1_c16270 0.26 +0.9
1,689,415 - PGA1_c16270 0.26 +0.9
1,689,452 + PGA1_c16270 0.28 -0.6
1,689,460 - PGA1_c16270 0.29 -0.7
1,689,501 + PGA1_c16270 0.31 -0.5
1,689,501 + PGA1_c16270 0.31 -0.5
1,689,501 + PGA1_c16270 0.31 -1.2
1,689,501 + PGA1_c16270 0.31 -0.8
1,689,509 - PGA1_c16270 0.32 +1.2
1,689,509 - PGA1_c16270 0.32 -0.4
1,689,554 - PGA1_c16270 0.35 -0.8
1,689,612 + PGA1_c16270 0.38 +1.2
1,689,613 + PGA1_c16270 0.38 +1.0
1,689,655 + PGA1_c16270 0.41 +0.9
1,689,663 - PGA1_c16270 0.42 -1.9
1,689,787 + PGA1_c16270 0.49 -0.2
1,689,787 + PGA1_c16270 0.49 -2.1
1,689,829 + PGA1_c16270 0.52 +2.4
1,689,837 - PGA1_c16270 0.52 -1.5
1,689,858 + PGA1_c16270 0.54 +1.0
1,689,889 + PGA1_c16270 0.56 -1.1
1,689,897 - PGA1_c16270 0.56 +0.7
1,689,897 - PGA1_c16270 0.56 +0.3
1,689,899 + PGA1_c16270 0.56 +3.0
1,689,904 + PGA1_c16270 0.57 +0.3
1,689,906 + PGA1_c16270 0.57 +1.9
1,689,906 + PGA1_c16270 0.57 +0.2
1,689,906 + PGA1_c16270 0.57 -0.7
1,689,906 + PGA1_c16270 0.57 +1.4
1,689,906 + PGA1_c16270 0.57 -1.2
1,689,907 - PGA1_c16270 0.57 +0.4
1,689,907 - PGA1_c16270 0.57 +1.8
1,689,907 - PGA1_c16270 0.57 -1.2
1,689,907 - PGA1_c16270 0.57 -0.9
1,689,914 - PGA1_c16270 0.57 +0.7

Or see this region's nucleotide sequence