Strain Fitness in Marinobacter adhaerens HP15 around HP15_1519

Experiment: m.b. nitrite 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1517 and HP15_1518 overlap by 10 nucleotidesHP15_1518 and HP15_1519 are separated by 3 nucleotidesHP15_1519 and HP15_1520 are separated by 14 nucleotides HP15_1517: HP15_1517 - succinate dehydrogenase, cytochrome b560 subunit, at 1,597,490 to 1,597,867 _1517 HP15_1518: HP15_1518 - succinate dehydrogenase, hydrophobic membrane anchor, at 1,597,858 to 1,598,205 _1518 HP15_1519: HP15_1519 - succinate dehydrogenase flavoprotein subunit-like protein, at 1,598,209 to 1,599,981 _1519 HP15_1520: HP15_1520 - succinate dehydrogenase/fumarate reductase iron-sulfur protein, at 1,599,996 to 1,600,700 _1520 Position (kb) 1598 1599 1600Strain fitness (log2 ratio) -1 0 1at 1597.224 kb on + strandat 1600.720 kb on + strandat 1600.725 kb on + strandat 1600.733 kb on - strandat 1600.738 kb on - strandat 1600.755 kb on - strandat 1600.801 kb on + strandat 1600.820 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. nitrite 20 mM
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1,597,224 + +1.1
1,600,720 + -0.6
1,600,725 + -0.2
1,600,733 - -0.5
1,600,738 - -1.7
1,600,755 - -1.1
1,600,801 + -0.2
1,600,820 - +0.1

Or see this region's nucleotide sequence