Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c14800

Experiment: m.b. Vancomycin 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c14790 and PGA1_c14800 are separated by 99 nucleotidesPGA1_c14800 and PGA1_c14810 overlap by 4 nucleotides PGA1_c14790: PGA1_c14790 - nitrogen regulation protein NtrC, at 1,532,033 to 1,533,445 _c14790 PGA1_c14800: PGA1_c14800 - nitrogen regulation protein NtrY, at 1,533,545 to 1,535,824 _c14800 PGA1_c14810: PGA1_c14810 - nitrogen assimilation regulatory protein NtrX, at 1,535,821 to 1,537,236 _c14810 Position (kb) 1533 1534 1535 1536Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1533.708 kb on + strandat 1533.708 kb on + strandat 1533.798 kb on - strand, within PGA1_c14800at 1533.965 kb on + strand, within PGA1_c14800at 1534.189 kb on - strand, within PGA1_c14800at 1534.235 kb on + strand, within PGA1_c14800at 1535.813 kb on + strandat 1535.813 kb on + strandat 1535.813 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.032 mg/ml
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1,533,708 + -2.5
1,533,708 + -1.2
1,533,798 - PGA1_c14800 0.11 +0.0
1,533,965 + PGA1_c14800 0.18 -0.8
1,534,189 - PGA1_c14800 0.28 +1.2
1,534,235 + PGA1_c14800 0.30 +2.9
1,535,813 + +1.9
1,535,813 + +3.2
1,535,813 + +1.6

Or see this region's nucleotide sequence