Experiment: m.b. Vancomycin 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c12560 and PGA1_c12570 are separated by 93 nucleotides PGA1_c12570 and PGA1_c12580 overlap by 1 nucleotides PGA1_c12580 and PGA1_c12590 overlap by 37 nucleotides PGA1_c12590 and PGA1_c12600 are separated by 118 nucleotides
PGA1_c12560: PGA1_c12560 - putative NADH ubiquinone oxidoreductase subunit NDUFA12, at 1,303,552 to 1,303,938
_c12560
PGA1_c12570: PGA1_c12570 - ABC-type transport system involved in resistance to organic solvents, periplasmic component, at 1,304,032 to 1,304,484
_c12570
PGA1_c12580: PGA1_c12580 - Uncharacterized protein conserved in bacteria (DUF2155)., at 1,304,484 to 1,304,846
_c12580
PGA1_c12590: PGA1_c12590 - leucyl/phenylalanyl-tRNA--protein transferase Aat, at 1,304,810 to 1,305,442
_c12590
PGA1_c12600: PGA1_c12600 - biotin carboxylase AccA, at 1,305,561 to 1,306,913
_c12600
Position (kb) 1304
1305
1306 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 1303.957 kb on + strand at 1304.022 kb on - strand at 1304.045 kb on + strand at 1304.066 kb on + strand at 1304.168 kb on + strand, within PGA1_c12570 at 1304.234 kb on + strand, within PGA1_c12570 at 1304.242 kb on - strand, within PGA1_c12570 at 1304.325 kb on - strand, within PGA1_c12570 at 1304.335 kb on + strand, within PGA1_c12570 at 1304.473 kb on + strand at 1304.476 kb on - strand at 1304.481 kb on - strand at 1304.510 kb on - strand at 1304.591 kb on + strand, within PGA1_c12580 at 1304.591 kb on + strand, within PGA1_c12580 at 1304.591 kb on + strand, within PGA1_c12580 at 1304.599 kb on - strand, within PGA1_c12580 at 1304.706 kb on + strand, within PGA1_c12580 at 1304.713 kb on + strand, within PGA1_c12580 at 1304.773 kb on + strand, within PGA1_c12580 at 1304.773 kb on + strand, within PGA1_c12580 at 1304.773 kb on + strand, within PGA1_c12580 at 1304.821 kb on + strand at 1304.938 kb on + strand, within PGA1_c12590 at 1304.938 kb on + strand, within PGA1_c12590 at 1304.938 kb on + strand, within PGA1_c12590 at 1304.946 kb on - strand, within PGA1_c12590 at 1304.946 kb on - strand, within PGA1_c12590 at 1304.946 kb on - strand, within PGA1_c12590 at 1304.983 kb on + strand, within PGA1_c12590 at 1305.040 kb on + strand, within PGA1_c12590 at 1305.083 kb on + strand, within PGA1_c12590 at 1305.083 kb on + strand, within PGA1_c12590 at 1305.123 kb on - strand, within PGA1_c12590 at 1305.285 kb on + strand, within PGA1_c12590 at 1305.285 kb on - strand, within PGA1_c12590 at 1305.293 kb on - strand, within PGA1_c12590 at 1305.293 kb on - strand, within PGA1_c12590 at 1305.293 kb on - strand, within PGA1_c12590 at 1305.293 kb on - strand, within PGA1_c12590 at 1305.293 kb on - strand, within PGA1_c12590 at 1305.293 kb on - strand, within PGA1_c12590 at 1305.338 kb on - strand, within PGA1_c12590 at 1305.359 kb on - strand, within PGA1_c12590 at 1305.369 kb on - strand, within PGA1_c12590 at 1305.369 kb on - strand, within PGA1_c12590 at 1305.369 kb on - strand, within PGA1_c12590 at 1305.424 kb on + strand at 1305.424 kb on + strand at 1305.424 kb on + strand at 1305.424 kb on + strand at 1305.432 kb on - strand at 1305.432 kb on - strand at 1305.445 kb on - strand at 1305.505 kb on + strand at 1305.513 kb on - strand at 1305.568 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.032 mg/ml remove 1,303,957 + +1.0 1,304,022 - +1.1 1,304,045 + -3.3 1,304,066 + -2.1 1,304,168 + PGA1_c12570 0.30 +0.0 1,304,234 + PGA1_c12570 0.45 -1.1 1,304,242 - PGA1_c12570 0.46 +0.0 1,304,325 - PGA1_c12570 0.65 +0.9 1,304,335 + PGA1_c12570 0.67 -1.6 1,304,473 + -0.8 1,304,476 - -0.3 1,304,481 - +2.9 1,304,510 - -4.0 1,304,591 + PGA1_c12580 0.29 -0.6 1,304,591 + PGA1_c12580 0.29 -1.9 1,304,591 + PGA1_c12580 0.29 -0.3 1,304,599 - PGA1_c12580 0.32 -1.3 1,304,706 + PGA1_c12580 0.61 -0.7 1,304,713 + PGA1_c12580 0.63 +0.5 1,304,773 + PGA1_c12580 0.80 -2.5 1,304,773 + PGA1_c12580 0.80 -0.9 1,304,773 + PGA1_c12580 0.80 -3.3 1,304,821 + -0.3 1,304,938 + PGA1_c12590 0.20 -0.4 1,304,938 + PGA1_c12590 0.20 +0.0 1,304,938 + PGA1_c12590 0.20 +1.0 1,304,946 - PGA1_c12590 0.21 +1.5 1,304,946 - PGA1_c12590 0.21 -0.1 1,304,946 - PGA1_c12590 0.21 +0.9 1,304,983 + PGA1_c12590 0.27 +0.5 1,305,040 + PGA1_c12590 0.36 +0.4 1,305,083 + PGA1_c12590 0.43 +0.5 1,305,083 + PGA1_c12590 0.43 +0.7 1,305,123 - PGA1_c12590 0.49 -0.1 1,305,285 + PGA1_c12590 0.75 -0.8 1,305,285 - PGA1_c12590 0.75 +0.7 1,305,293 - PGA1_c12590 0.76 -0.1 1,305,293 - PGA1_c12590 0.76 +1.4 1,305,293 - PGA1_c12590 0.76 -1.5 1,305,293 - PGA1_c12590 0.76 +1.4 1,305,293 - PGA1_c12590 0.76 +1.6 1,305,293 - PGA1_c12590 0.76 -0.1 1,305,338 - PGA1_c12590 0.83 +0.8 1,305,359 - PGA1_c12590 0.87 +0.3 1,305,369 - PGA1_c12590 0.88 +2.0 1,305,369 - PGA1_c12590 0.88 +2.0 1,305,369 - PGA1_c12590 0.88 -0.4 1,305,424 + -0.4 1,305,424 + +1.3 1,305,424 + +0.1 1,305,424 + -0.1 1,305,432 - +0.2 1,305,432 - +0.3 1,305,445 - +2.0 1,305,505 + -0.5 1,305,513 - -0.1 1,305,568 - +0.8
Or see this region's nucleotide sequence