Experiment: m.b. Vancomycin 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c01240 and PGA1_c01250 overlap by 1 nucleotides PGA1_c01250 and PGA1_c01260 are separated by 333 nucleotides PGA1_c01260 and PGA1_c01270 are separated by 3 nucleotides
PGA1_c01240: PGA1_c01240 - electron transfer flavoprotein subunit alpha, at 116,001 to 116,927
_c01240
PGA1_c01250: PGA1_c01250 - electron transfer flavoprotein subunit beta, at 116,927 to 117,685
_c01250
PGA1_c01260: PGA1_c01260 - putative cobalamin adenosyltransferase, at 118,019 to 118,591
_c01260
PGA1_c01270: PGA1_c01270 - Hypoxia induced protein conserved region., at 118,595 to 118,801
_c01270
Position (kb) 116
117
118 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 116.007 kb on - strand at 117.836 kb on + strand at 117.872 kb on + strand at 117.909 kb on - strand at 118.072 kb on - strand at 118.237 kb on + strand, within PGA1_c01260 at 118.347 kb on + strand, within PGA1_c01260 at 118.367 kb on + strand, within PGA1_c01260 at 118.508 kb on + strand, within PGA1_c01260 at 118.594 kb on - strand at 118.602 kb on + strand at 118.618 kb on + strand, within PGA1_c01270 at 118.618 kb on + strand, within PGA1_c01270 at 118.634 kb on + strand, within PGA1_c01270 at 118.634 kb on + strand, within PGA1_c01270 at 118.642 kb on - strand, within PGA1_c01270 at 118.642 kb on - strand, within PGA1_c01270 at 118.642 kb on - strand, within PGA1_c01270
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.032 mg/ml remove 116,007 - -1.1 117,836 + +3.1 117,872 + -1.4 117,909 - -0.7 118,072 - -2.9 118,237 + PGA1_c01260 0.38 -2.3 118,347 + PGA1_c01260 0.57 -2.8 118,367 + PGA1_c01260 0.61 -3.1 118,508 + PGA1_c01260 0.85 +1.3 118,594 - -0.6 118,602 + -0.5 118,618 + PGA1_c01270 0.11 -0.9 118,618 + PGA1_c01270 0.11 -0.6 118,634 + PGA1_c01270 0.19 +0.2 118,634 + PGA1_c01270 0.19 +0.3 118,642 - PGA1_c01270 0.23 -1.0 118,642 - PGA1_c01270 0.23 +1.1 118,642 - PGA1_c01270 0.23 -0.1
Or see this region's nucleotide sequence