Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c01240

Experiment: m.b. Vancomycin 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c01230 and PGA1_c01240 are separated by 91 nucleotidesPGA1_c01240 and PGA1_c01250 overlap by 1 nucleotides PGA1_c01230: PGA1_c01230 - hypothetical protein, at 115,088 to 115,909 _c01230 PGA1_c01240: PGA1_c01240 - electron transfer flavoprotein subunit alpha, at 116,001 to 116,927 _c01240 PGA1_c01250: PGA1_c01250 - electron transfer flavoprotein subunit beta, at 116,927 to 117,685 _c01250 Position (kb) 116 117Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 115.037 kb on + strandat 115.045 kb on + strandat 115.052 kb on + strandat 115.053 kb on - strandat 115.057 kb on + strandat 115.060 kb on - strandat 115.065 kb on - strandat 115.070 kb on - strandat 115.093 kb on - strandat 115.097 kb on + strandat 115.107 kb on - strandat 115.118 kb on - strandat 115.130 kb on + strandat 115.130 kb on + strandat 115.130 kb on + strandat 115.137 kb on + strandat 115.173 kb on + strand, within PGA1_c01230at 115.212 kb on + strand, within PGA1_c01230at 115.212 kb on + strand, within PGA1_c01230at 115.212 kb on + strand, within PGA1_c01230at 115.212 kb on + strand, within PGA1_c01230at 115.212 kb on + strand, within PGA1_c01230at 115.220 kb on - strand, within PGA1_c01230at 115.220 kb on - strand, within PGA1_c01230at 115.227 kb on - strand, within PGA1_c01230at 115.289 kb on + strand, within PGA1_c01230at 115.291 kb on + strand, within PGA1_c01230at 115.292 kb on - strand, within PGA1_c01230at 115.297 kb on - strand, within PGA1_c01230at 115.320 kb on - strand, within PGA1_c01230at 115.360 kb on + strand, within PGA1_c01230at 115.368 kb on - strand, within PGA1_c01230at 115.421 kb on + strand, within PGA1_c01230at 115.442 kb on + strand, within PGA1_c01230at 115.452 kb on + strand, within PGA1_c01230at 115.476 kb on - strand, within PGA1_c01230at 115.585 kb on + strand, within PGA1_c01230at 115.619 kb on + strand, within PGA1_c01230at 115.619 kb on + strand, within PGA1_c01230at 115.619 kb on + strand, within PGA1_c01230at 115.622 kb on - strand, within PGA1_c01230at 115.627 kb on - strand, within PGA1_c01230at 115.627 kb on - strand, within PGA1_c01230at 115.627 kb on - strand, within PGA1_c01230at 115.627 kb on - strand, within PGA1_c01230at 115.715 kb on - strand, within PGA1_c01230at 115.809 kb on + strand, within PGA1_c01230at 115.819 kb on + strand, within PGA1_c01230at 115.826 kb on + strand, within PGA1_c01230at 115.827 kb on - strandat 115.836 kb on + strandat 115.905 kb on + strandat 115.905 kb on + strandat 115.905 kb on + strandat 115.910 kb on + strandat 115.918 kb on - strandat 116.007 kb on - strandat 117.836 kb on + strandat 117.872 kb on + strandat 117.909 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.032 mg/ml
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115,037 + -0.7
115,045 + +0.2
115,052 + -1.4
115,053 - -1.7
115,057 + -3.3
115,060 - -2.9
115,065 - -1.3
115,070 - -1.4
115,093 - -0.4
115,097 + -0.5
115,107 - +1.1
115,118 - +0.6
115,130 + -3.0
115,130 + -2.8
115,130 + -3.1
115,137 + -2.3
115,173 + PGA1_c01230 0.10 +0.0
115,212 + PGA1_c01230 0.15 +1.4
115,212 + PGA1_c01230 0.15 -2.6
115,212 + PGA1_c01230 0.15 +0.6
115,212 + PGA1_c01230 0.15 -0.4
115,212 + PGA1_c01230 0.15 -3.5
115,220 - PGA1_c01230 0.16 +0.9
115,220 - PGA1_c01230 0.16 +0.7
115,227 - PGA1_c01230 0.17 -1.9
115,289 + PGA1_c01230 0.24 -0.5
115,291 + PGA1_c01230 0.25 -0.7
115,292 - PGA1_c01230 0.25 -0.8
115,297 - PGA1_c01230 0.25 -1.8
115,320 - PGA1_c01230 0.28 -2.2
115,360 + PGA1_c01230 0.33 -1.2
115,368 - PGA1_c01230 0.34 +0.3
115,421 + PGA1_c01230 0.41 -0.9
115,442 + PGA1_c01230 0.43 -2.8
115,452 + PGA1_c01230 0.44 -2.7
115,476 - PGA1_c01230 0.47 -1.3
115,585 + PGA1_c01230 0.60 -1.6
115,619 + PGA1_c01230 0.65 -0.1
115,619 + PGA1_c01230 0.65 -2.7
115,619 + PGA1_c01230 0.65 -2.8
115,622 - PGA1_c01230 0.65 -0.1
115,627 - PGA1_c01230 0.66 -2.9
115,627 - PGA1_c01230 0.66 -0.8
115,627 - PGA1_c01230 0.66 +0.3
115,627 - PGA1_c01230 0.66 -2.1
115,715 - PGA1_c01230 0.76 -1.6
115,809 + PGA1_c01230 0.88 +0.2
115,819 + PGA1_c01230 0.89 +1.4
115,826 + PGA1_c01230 0.90 -0.5
115,827 - +0.3
115,836 + -1.0
115,905 + +0.6
115,905 + +0.9
115,905 + +0.6
115,910 + -0.9
115,918 - -0.1
116,007 - -1.1
117,836 + +3.1
117,872 + -1.4
117,909 - -0.7

Or see this region's nucleotide sequence