Experiment: L-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0699 and Psest_0700 overlap by 13 nucleotides Psest_0700 and Psest_0701 are separated by 168 nucleotides
Psest_0699: Psest_0699 - alanine racemase, at 763,444 to 764,520
_0699
Psest_0700: Psest_0700 - diguanylate cyclase (GGDEF) domain, at 764,508 to 766,370
_0700
Psest_0701: Psest_0701 - uncharacterized radical SAM protein YgiQ, at 766,539 to 768,818
_0701
Position (kb) 764
765
766
767 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 764.581 kb on + strand at 764.605 kb on + strand at 764.605 kb on + strand at 764.605 kb on + strand at 764.605 kb on + strand at 764.605 kb on + strand at 764.606 kb on - strand at 764.606 kb on - strand at 764.606 kb on - strand at 764.606 kb on - strand at 765.202 kb on - strand, within Psest_0700 at 765.202 kb on - strand, within Psest_0700 at 765.361 kb on + strand, within Psest_0700 at 765.362 kb on - strand, within Psest_0700 at 765.362 kb on - strand, within Psest_0700 at 765.380 kb on - strand, within Psest_0700 at 765.380 kb on - strand, within Psest_0700 at 765.380 kb on - strand, within Psest_0700 at 765.505 kb on + strand, within Psest_0700 at 765.505 kb on + strand, within Psest_0700 at 765.505 kb on + strand, within Psest_0700 at 765.505 kb on + strand, within Psest_0700 at 765.506 kb on - strand, within Psest_0700 at 765.506 kb on - strand, within Psest_0700 at 765.724 kb on + strand, within Psest_0700 at 765.733 kb on + strand, within Psest_0700 at 765.734 kb on - strand, within Psest_0700 at 765.773 kb on - strand, within Psest_0700 at 765.799 kb on + strand, within Psest_0700 at 765.799 kb on + strand, within Psest_0700 at 765.799 kb on + strand, within Psest_0700 at 765.800 kb on - strand, within Psest_0700 at 765.895 kb on + strand, within Psest_0700 at 765.907 kb on + strand, within Psest_0700 at 765.907 kb on + strand, within Psest_0700 at 765.907 kb on + strand, within Psest_0700 at 765.907 kb on + strand, within Psest_0700 at 765.907 kb on + strand, within Psest_0700 at 765.908 kb on - strand, within Psest_0700 at 766.045 kb on + strand, within Psest_0700 at 766.046 kb on - strand, within Psest_0700 at 766.261 kb on + strand at 766.261 kb on + strand at 766.262 kb on - strand at 766.262 kb on - strand at 766.262 kb on - strand at 766.262 kb on - strand at 766.262 kb on - strand at 766.262 kb on - strand at 766.262 kb on - strand at 766.262 kb on - strand at 766.335 kb on + strand at 766.350 kb on + strand at 766.351 kb on - strand at 766.351 kb on - strand at 766.412 kb on + strand at 766.412 kb on + strand at 766.413 kb on - strand at 766.413 kb on - strand at 766.413 kb on - strand at 766.414 kb on + strand at 766.500 kb on + strand at 766.500 kb on + strand at 766.502 kb on + strand at 766.575 kb on + strand at 766.576 kb on - strand at 766.683 kb on + strand at 766.683 kb on + strand at 766.683 kb on + strand at 766.683 kb on + strand at 766.684 kb on - strand at 766.684 kb on - strand at 766.684 kb on - strand at 766.684 kb on - strand at 766.899 kb on + strand, within Psest_0701 at 766.950 kb on + strand, within Psest_0701 at 766.950 kb on + strand, within Psest_0701 at 766.950 kb on + strand, within Psest_0701 at 766.951 kb on - strand, within Psest_0701 at 766.974 kb on + strand, within Psest_0701 at 766.974 kb on + strand, within Psest_0701 at 766.974 kb on + strand, within Psest_0701 at 766.975 kb on - strand, within Psest_0701 at 766.975 kb on - strand, within Psest_0701 at 767.040 kb on + strand, within Psest_0701
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (N) remove 764,581 + -0.4 764,605 + -1.2 764,605 + -0.7 764,605 + -0.7 764,605 + +0.1 764,605 + -0.6 764,606 - -0.9 764,606 - -3.7 764,606 - +1.3 764,606 - -2.9 765,202 - Psest_0700 0.37 -0.9 765,202 - Psest_0700 0.37 -1.8 765,361 + Psest_0700 0.46 +1.1 765,362 - Psest_0700 0.46 -0.6 765,362 - Psest_0700 0.46 -1.6 765,380 - Psest_0700 0.47 -1.2 765,380 - Psest_0700 0.47 -0.8 765,380 - Psest_0700 0.47 -0.7 765,505 + Psest_0700 0.54 -0.8 765,505 + Psest_0700 0.54 -1.3 765,505 + Psest_0700 0.54 -1.1 765,505 + Psest_0700 0.54 -0.6 765,506 - Psest_0700 0.54 -1.8 765,506 - Psest_0700 0.54 -0.6 765,724 + Psest_0700 0.65 +0.4 765,733 + Psest_0700 0.66 +0.2 765,734 - Psest_0700 0.66 -0.6 765,773 - Psest_0700 0.68 -1.6 765,799 + Psest_0700 0.69 -0.4 765,799 + Psest_0700 0.69 -0.0 765,799 + Psest_0700 0.69 -1.7 765,800 - Psest_0700 0.69 -0.7 765,895 + Psest_0700 0.74 +0.2 765,907 + Psest_0700 0.75 +0.6 765,907 + Psest_0700 0.75 +0.4 765,907 + Psest_0700 0.75 -0.9 765,907 + Psest_0700 0.75 +0.4 765,907 + Psest_0700 0.75 +2.3 765,908 - Psest_0700 0.75 -3.4 766,045 + Psest_0700 0.83 +1.0 766,046 - Psest_0700 0.83 -0.6 766,261 + -0.5 766,261 + -0.3 766,262 - -1.3 766,262 - -0.4 766,262 - +0.5 766,262 - -2.1 766,262 - +0.2 766,262 - -0.5 766,262 - +0.4 766,262 - -0.4 766,335 + -0.1 766,350 + -0.8 766,351 - -0.0 766,351 - +0.2 766,412 + +0.5 766,412 + -0.0 766,413 - +0.8 766,413 - -0.9 766,413 - -0.1 766,414 + -0.3 766,500 + +0.6 766,500 + -2.3 766,502 + -0.0 766,575 + +0.5 766,576 - -1.6 766,683 + +0.0 766,683 + -0.7 766,683 + +0.1 766,683 + -2.2 766,684 - -1.7 766,684 - -1.6 766,684 - +0.6 766,684 - -1.6 766,899 + Psest_0701 0.16 +0.2 766,950 + Psest_0701 0.18 -0.6 766,950 + Psest_0701 0.18 -1.1 766,950 + Psest_0701 0.18 -1.2 766,951 - Psest_0701 0.18 -0.9 766,974 + Psest_0701 0.19 -0.9 766,974 + Psest_0701 0.19 -0.9 766,974 + Psest_0701 0.19 -1.0 766,975 - Psest_0701 0.19 -2.2 766,975 - Psest_0701 0.19 -0.6 767,040 + Psest_0701 0.22 -1.0
Or see this region's nucleotide sequence