Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0646

Experiment: L-Alanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0645 and Psest_0646 overlap by 4 nucleotidesPsest_0646 and Psest_0647 overlap by 4 nucleotides Psest_0645: Psest_0645 - Siderophore synthetase component, at 699,447 to 701,255 _0645 Psest_0646: Psest_0646 - Acetyltransferases, including N-acetylases of ribosomal proteins, at 701,252 to 701,839 _0646 Psest_0647: Psest_0647 - Arabinose efflux permease, at 701,836 to 702,990 _0647 Position (kb) 701 702Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 700.282 kb on + strand, within Psest_0645at 700.282 kb on + strand, within Psest_0645at 700.282 kb on + strand, within Psest_0645at 700.282 kb on + strand, within Psest_0645at 700.283 kb on - strand, within Psest_0645at 700.283 kb on - strand, within Psest_0645at 700.283 kb on - strand, within Psest_0645at 700.283 kb on - strand, within Psest_0645at 700.283 kb on - strand, within Psest_0645at 700.312 kb on + strand, within Psest_0645at 700.312 kb on + strand, within Psest_0645at 700.312 kb on + strand, within Psest_0645at 700.312 kb on + strand, within Psest_0645at 700.312 kb on + strand, within Psest_0645at 700.312 kb on + strand, within Psest_0645at 700.312 kb on + strand, within Psest_0645at 700.312 kb on + strand, within Psest_0645at 700.312 kb on + strand, within Psest_0645at 700.312 kb on + strand, within Psest_0645at 700.312 kb on + strand, within Psest_0645at 700.312 kb on + strand, within Psest_0645at 700.312 kb on + strand, within Psest_0645at 700.312 kb on + strand, within Psest_0645at 700.312 kb on + strand, within Psest_0645at 700.312 kb on + strand, within Psest_0645at 700.312 kb on + strand, within Psest_0645at 700.312 kb on + strand, within Psest_0645at 700.312 kb on + strand, within Psest_0645at 700.312 kb on + strand, within Psest_0645at 700.313 kb on - strand, within Psest_0645at 700.313 kb on - strand, within Psest_0645at 700.313 kb on - strand, within Psest_0645at 700.313 kb on - strand, within Psest_0645at 700.313 kb on - strand, within Psest_0645at 700.313 kb on - strand, within Psest_0645at 700.313 kb on - strand, within Psest_0645at 700.313 kb on - strand, within Psest_0645at 700.313 kb on - strand, within Psest_0645at 700.313 kb on - strand, within Psest_0645at 700.313 kb on - strand, within Psest_0645at 700.313 kb on - strand, within Psest_0645at 700.313 kb on - strand, within Psest_0645at 700.453 kb on + strand, within Psest_0645at 700.453 kb on + strand, within Psest_0645at 700.454 kb on - strand, within Psest_0645at 700.454 kb on - strand, within Psest_0645at 700.454 kb on - strand, within Psest_0645at 700.540 kb on + strand, within Psest_0645at 700.540 kb on + strand, within Psest_0645at 700.584 kb on + strand, within Psest_0645at 700.584 kb on + strand, within Psest_0645at 700.585 kb on - strand, within Psest_0645at 700.585 kb on - strand, within Psest_0645at 700.585 kb on - strand, within Psest_0645at 700.617 kb on + strand, within Psest_0645at 700.651 kb on + strand, within Psest_0645at 700.651 kb on + strand, within Psest_0645at 700.651 kb on + strand, within Psest_0645at 700.652 kb on - strand, within Psest_0645at 700.839 kb on - strand, within Psest_0645at 700.861 kb on + strand, within Psest_0645at 700.861 kb on + strand, within Psest_0645at 700.861 kb on + strand, within Psest_0645at 700.861 kb on + strand, within Psest_0645at 700.861 kb on + strand, within Psest_0645at 701.507 kb on + strand, within Psest_0646at 701.507 kb on + strand, within Psest_0646at 701.507 kb on + strand, within Psest_0646at 701.507 kb on + strand, within Psest_0646at 701.508 kb on - strand, within Psest_0646at 701.508 kb on - strand, within Psest_0646at 701.508 kb on - strand, within Psest_0646at 701.661 kb on + strand, within Psest_0646at 701.661 kb on + strand, within Psest_0646at 701.662 kb on - strand, within Psest_0646at 701.662 kb on - strand, within Psest_0646at 701.662 kb on - strand, within Psest_0646at 701.662 kb on - strand, within Psest_0646at 701.662 kb on - strand, within Psest_0646at 701.662 kb on - strand, within Psest_0646at 701.712 kb on + strand, within Psest_0646at 701.713 kb on - strand, within Psest_0646at 701.793 kb on + strandat 702.041 kb on + strand, within Psest_0647at 702.042 kb on - strand, within Psest_0647at 702.099 kb on - strand, within Psest_0647at 702.218 kb on + strand, within Psest_0647at 702.218 kb on + strand, within Psest_0647at 702.219 kb on - strand, within Psest_0647at 702.219 kb on - strand, within Psest_0647at 702.263 kb on + strand, within Psest_0647at 702.315 kb on - strand, within Psest_0647at 702.341 kb on + strand, within Psest_0647at 702.341 kb on + strand, within Psest_0647at 702.341 kb on + strand, within Psest_0647at 702.342 kb on - strand, within Psest_0647at 702.342 kb on - strand, within Psest_0647at 702.342 kb on - strand, within Psest_0647at 702.342 kb on - strand, within Psest_0647at 702.353 kb on + strand, within Psest_0647at 702.353 kb on + strand, within Psest_0647at 702.353 kb on + strand, within Psest_0647at 702.354 kb on - strand, within Psest_0647at 702.354 kb on - strand, within Psest_0647at 702.354 kb on - strand, within Psest_0647at 702.533 kb on + strand, within Psest_0647at 702.533 kb on + strand, within Psest_0647at 702.533 kb on + strand, within Psest_0647at 702.534 kb on - strand, within Psest_0647at 702.534 kb on - strand, within Psest_0647at 702.534 kb on - strand, within Psest_0647at 702.610 kb on - strand, within Psest_0647at 702.648 kb on - strand, within Psest_0647at 702.648 kb on - strand, within Psest_0647at 702.653 kb on + strand, within Psest_0647at 702.653 kb on + strand, within Psest_0647at 702.653 kb on + strand, within Psest_0647at 702.653 kb on + strand, within Psest_0647at 702.653 kb on + strand, within Psest_0647at 702.654 kb on - strand, within Psest_0647at 702.654 kb on - strand, within Psest_0647at 702.654 kb on - strand, within Psest_0647at 702.665 kb on + strand, within Psest_0647at 702.666 kb on - strand, within Psest_0647

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (N)
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700,282 + Psest_0645 0.46 -0.1
700,282 + Psest_0645 0.46 +0.0
700,282 + Psest_0645 0.46 -0.1
700,282 + Psest_0645 0.46 +2.3
700,283 - Psest_0645 0.46 +0.5
700,283 - Psest_0645 0.46 -1.4
700,283 - Psest_0645 0.46 -0.3
700,283 - Psest_0645 0.46 -0.9
700,283 - Psest_0645 0.46 +0.7
700,312 + Psest_0645 0.48 -0.5
700,312 + Psest_0645 0.48 -0.7
700,312 + Psest_0645 0.48 -0.7
700,312 + Psest_0645 0.48 +0.8
700,312 + Psest_0645 0.48 -0.7
700,312 + Psest_0645 0.48 +0.5
700,312 + Psest_0645 0.48 -0.0
700,312 + Psest_0645 0.48 +1.3
700,312 + Psest_0645 0.48 +0.3
700,312 + Psest_0645 0.48 -1.7
700,312 + Psest_0645 0.48 +0.6
700,312 + Psest_0645 0.48 -1.0
700,312 + Psest_0645 0.48 -0.5
700,312 + Psest_0645 0.48 +0.9
700,312 + Psest_0645 0.48 -0.5
700,312 + Psest_0645 0.48 +0.3
700,312 + Psest_0645 0.48 +0.1
700,312 + Psest_0645 0.48 +0.3
700,312 + Psest_0645 0.48 +1.4
700,312 + Psest_0645 0.48 +0.1
700,313 - Psest_0645 0.48 +2.3
700,313 - Psest_0645 0.48 +0.7
700,313 - Psest_0645 0.48 -1.5
700,313 - Psest_0645 0.48 +1.3
700,313 - Psest_0645 0.48 +0.2
700,313 - Psest_0645 0.48 -0.0
700,313 - Psest_0645 0.48 -1.5
700,313 - Psest_0645 0.48 +0.3
700,313 - Psest_0645 0.48 +0.5
700,313 - Psest_0645 0.48 -0.7
700,313 - Psest_0645 0.48 +0.5
700,313 - Psest_0645 0.48 +0.1
700,313 - Psest_0645 0.48 -0.4
700,453 + Psest_0645 0.56 -1.3
700,453 + Psest_0645 0.56 +0.0
700,454 - Psest_0645 0.56 -1.2
700,454 - Psest_0645 0.56 +0.1
700,454 - Psest_0645 0.56 -0.5
700,540 + Psest_0645 0.60 -1.5
700,540 + Psest_0645 0.60 -0.5
700,584 + Psest_0645 0.63 +0.5
700,584 + Psest_0645 0.63 -0.2
700,585 - Psest_0645 0.63 -0.3
700,585 - Psest_0645 0.63 -0.3
700,585 - Psest_0645 0.63 +0.8
700,617 + Psest_0645 0.65 +0.3
700,651 + Psest_0645 0.67 -0.7
700,651 + Psest_0645 0.67 -0.4
700,651 + Psest_0645 0.67 +0.3
700,652 - Psest_0645 0.67 +2.3
700,839 - Psest_0645 0.77 +0.4
700,861 + Psest_0645 0.78 +1.2
700,861 + Psest_0645 0.78 -1.3
700,861 + Psest_0645 0.78 -0.7
700,861 + Psest_0645 0.78 -0.2
700,861 + Psest_0645 0.78 +0.6
701,507 + Psest_0646 0.43 +0.9
701,507 + Psest_0646 0.43 +0.1
701,507 + Psest_0646 0.43 +0.3
701,507 + Psest_0646 0.43 +0.2
701,508 - Psest_0646 0.44 -0.3
701,508 - Psest_0646 0.44 -1.2
701,508 - Psest_0646 0.44 -0.9
701,661 + Psest_0646 0.70 -0.3
701,661 + Psest_0646 0.70 +0.3
701,662 - Psest_0646 0.70 -0.1
701,662 - Psest_0646 0.70 +1.3
701,662 - Psest_0646 0.70 -1.6
701,662 - Psest_0646 0.70 -2.8
701,662 - Psest_0646 0.70 +0.3
701,662 - Psest_0646 0.70 -0.7
701,712 + Psest_0646 0.78 -0.4
701,713 - Psest_0646 0.78 -0.8
701,793 + -0.1
702,041 + Psest_0647 0.18 +1.3
702,042 - Psest_0647 0.18 -1.7
702,099 - Psest_0647 0.23 -1.0
702,218 + Psest_0647 0.33 -0.7
702,218 + Psest_0647 0.33 -0.3
702,219 - Psest_0647 0.33 +0.5
702,219 - Psest_0647 0.33 +0.9
702,263 + Psest_0647 0.37 -0.8
702,315 - Psest_0647 0.41 -0.6
702,341 + Psest_0647 0.44 -0.6
702,341 + Psest_0647 0.44 +0.3
702,341 + Psest_0647 0.44 -1.0
702,342 - Psest_0647 0.44 -0.1
702,342 - Psest_0647 0.44 -1.5
702,342 - Psest_0647 0.44 -0.3
702,342 - Psest_0647 0.44 -0.9
702,353 + Psest_0647 0.45 -0.1
702,353 + Psest_0647 0.45 -0.3
702,353 + Psest_0647 0.45 -2.0
702,354 - Psest_0647 0.45 +1.3
702,354 - Psest_0647 0.45 -0.2
702,354 - Psest_0647 0.45 +0.5
702,533 + Psest_0647 0.60 +1.0
702,533 + Psest_0647 0.60 -1.0
702,533 + Psest_0647 0.60 -1.0
702,534 - Psest_0647 0.60 +0.1
702,534 - Psest_0647 0.60 -0.3
702,534 - Psest_0647 0.60 +0.7
702,610 - Psest_0647 0.67 -1.3
702,648 - Psest_0647 0.70 -0.9
702,648 - Psest_0647 0.70 +0.9
702,653 + Psest_0647 0.71 +2.9
702,653 + Psest_0647 0.71 -0.0
702,653 + Psest_0647 0.71 -0.3
702,653 + Psest_0647 0.71 -0.7
702,653 + Psest_0647 0.71 -0.4
702,654 - Psest_0647 0.71 +0.1
702,654 - Psest_0647 0.71 -0.3
702,654 - Psest_0647 0.71 +2.0
702,665 + Psest_0647 0.72 +0.3
702,666 - Psest_0647 0.72 +0.4

Or see this region's nucleotide sequence