Experiment: m.b. nitrite 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_4041 and HP15_4042 overlap by 4 nucleotides HP15_4042 and HP15_4043 are separated by 95 nucleotides HP15_4043 and HP15_4044 are separated by 69 nucleotides HP15_4044 and HP15_4045 are separated by 10 nucleotides HP15_4045 and HP15_4046 overlap by 17 nucleotides
HP15_4041: HP15_4041 - OmpA/MotB domain protein, at 4,276,231 to 4,277,256
_4041
HP15_4042: HP15_4042 - MotA/TolQ/ExbB proton channel family protein, at 4,277,253 to 4,277,981
_4042
HP15_4043: HP15_4043 - 4-hydroxybenzoyl-CoA thioesterase, at 4,278,077 to 4,278,523
_4043
HP15_4044: HP15_4044 - ThiJ/PfpI family protein, at 4,278,593 to 4,279,294
_4044
HP15_4045: HP15_4045 - hypothetical protein, at 4,279,305 to 4,279,433
_4045
HP15_4046: HP15_4046 - extracellular solute-binding protein, family 3, at 4,279,417 to 4,280,220
_4046
Position (kb) 4278
4279 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4277.129 kb on + strand, within HP15_4041 at 4277.251 kb on + strand at 4277.259 kb on - strand at 4277.292 kb on + strand at 4277.302 kb on + strand at 4277.313 kb on + strand at 4277.315 kb on + strand at 4277.315 kb on + strand at 4277.315 kb on + strand at 4277.323 kb on - strand at 4277.345 kb on - strand, within HP15_4042 at 4277.350 kb on - strand, within HP15_4042 at 4277.364 kb on + strand, within HP15_4042 at 4277.410 kb on - strand, within HP15_4042 at 4277.429 kb on - strand, within HP15_4042 at 4277.442 kb on + strand, within HP15_4042 at 4277.491 kb on - strand, within HP15_4042 at 4277.554 kb on + strand, within HP15_4042 at 4277.653 kb on - strand, within HP15_4042 at 4277.667 kb on - strand, within HP15_4042 at 4277.772 kb on - strand, within HP15_4042 at 4277.815 kb on + strand, within HP15_4042 at 4277.892 kb on + strand, within HP15_4042 at 4277.966 kb on + strand at 4278.084 kb on + strand at 4278.137 kb on - strand, within HP15_4043 at 4278.311 kb on - strand, within HP15_4043 at 4278.345 kb on + strand, within HP15_4043 at 4278.348 kb on - strand, within HP15_4043 at 4278.412 kb on - strand, within HP15_4043 at 4278.591 kb on + strand at 4278.607 kb on - strand at 4278.607 kb on - strand at 4278.628 kb on - strand at 4278.634 kb on + strand at 4278.701 kb on - strand, within HP15_4044 at 4278.701 kb on - strand, within HP15_4044 at 4278.757 kb on + strand, within HP15_4044 at 4278.767 kb on + strand, within HP15_4044 at 4278.811 kb on - strand, within HP15_4044 at 4278.865 kb on + strand, within HP15_4044 at 4278.873 kb on - strand, within HP15_4044 at 4278.873 kb on - strand, within HP15_4044 at 4278.915 kb on + strand, within HP15_4044 at 4278.923 kb on - strand, within HP15_4044 at 4278.923 kb on - strand, within HP15_4044 at 4279.021 kb on + strand, within HP15_4044 at 4279.088 kb on - strand, within HP15_4044 at 4279.098 kb on - strand, within HP15_4044 at 4279.109 kb on + strand, within HP15_4044 at 4279.127 kb on - strand, within HP15_4044 at 4279.151 kb on + strand, within HP15_4044 at 4279.278 kb on - strand at 4279.343 kb on - strand, within HP15_4045 at 4279.426 kb on + strand at 4279.489 kb on + strand at 4279.498 kb on + strand, within HP15_4046
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 10 mM remove 4,277,129 + HP15_4041 0.88 +0.3 4,277,251 + +0.6 4,277,259 - -0.3 4,277,292 + +0.7 4,277,302 + -2.3 4,277,313 + -0.3 4,277,315 + -0.6 4,277,315 + +0.1 4,277,315 + +0.1 4,277,323 - +0.0 4,277,345 - HP15_4042 0.13 +0.2 4,277,350 - HP15_4042 0.13 -0.8 4,277,364 + HP15_4042 0.15 +0.3 4,277,410 - HP15_4042 0.22 +0.1 4,277,429 - HP15_4042 0.24 +0.3 4,277,442 + HP15_4042 0.26 -0.3 4,277,491 - HP15_4042 0.33 -0.8 4,277,554 + HP15_4042 0.41 +0.2 4,277,653 - HP15_4042 0.55 +0.4 4,277,667 - HP15_4042 0.57 +0.0 4,277,772 - HP15_4042 0.71 -1.1 4,277,815 + HP15_4042 0.77 +0.7 4,277,892 + HP15_4042 0.88 -0.5 4,277,966 + -0.1 4,278,084 + +0.2 4,278,137 - HP15_4043 0.13 -0.4 4,278,311 - HP15_4043 0.52 -0.8 4,278,345 + HP15_4043 0.60 -0.8 4,278,348 - HP15_4043 0.61 -0.1 4,278,412 - HP15_4043 0.75 -0.7 4,278,591 + -0.5 4,278,607 - -1.0 4,278,607 - +0.7 4,278,628 - -0.2 4,278,634 + -0.3 4,278,701 - HP15_4044 0.15 +0.6 4,278,701 - HP15_4044 0.15 -0.7 4,278,757 + HP15_4044 0.23 +3.2 4,278,767 + HP15_4044 0.25 +0.1 4,278,811 - HP15_4044 0.31 +1.0 4,278,865 + HP15_4044 0.39 +0.2 4,278,873 - HP15_4044 0.40 +2.4 4,278,873 - HP15_4044 0.40 -0.2 4,278,915 + HP15_4044 0.46 +0.6 4,278,923 - HP15_4044 0.47 +0.4 4,278,923 - HP15_4044 0.47 -0.8 4,279,021 + HP15_4044 0.61 -2.0 4,279,088 - HP15_4044 0.71 +1.1 4,279,098 - HP15_4044 0.72 -1.0 4,279,109 + HP15_4044 0.74 +0.3 4,279,127 - HP15_4044 0.76 +0.6 4,279,151 + HP15_4044 0.79 -0.0 4,279,278 - -0.7 4,279,343 - HP15_4045 0.29 +0.5 4,279,426 + -1.3 4,279,489 + -0.2 4,279,498 + HP15_4046 0.10 -0.7
Or see this region's nucleotide sequence