Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3928

Experiment: L-Alanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3927 and Psest_3928 are separated by 338 nucleotidesPsest_3928 and Psest_3929 are separated by 161 nucleotidesPsest_3929 and Psest_3930 overlap by 4 nucleotides Psest_3927: Psest_3927 - thiazole biosynthesis/tRNA modification protein ThiI, at 4,097,945 to 4,099,399 _3927 Psest_3928: Psest_3928 - glutamine synthetase, type I, at 4,099,738 to 4,101,144 _3928 Psest_3929: Psest_3929 - hypothetical protein, at 4,101,306 to 4,101,860 _3929 Psest_3930: Psest_3930 - Penicillin-Binding Protein C-terminus Family., at 4,101,857 to 4,102,486 _3930 Position (kb) 4099 4100 4101 4102Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4098.811 kb on - strand, within Psest_3927at 4099.102 kb on - strand, within Psest_3927at 4099.102 kb on - strand, within Psest_3927at 4099.313 kb on - strandat 4099.445 kb on + strandat 4099.445 kb on + strandat 4099.445 kb on + strandat 4099.445 kb on + strandat 4099.445 kb on + strandat 4099.445 kb on + strandat 4099.446 kb on - strandat 4099.448 kb on - strandat 4099.561 kb on + strandat 4099.561 kb on + strandat 4099.561 kb on + strandat 4099.561 kb on + strandat 4099.561 kb on + strandat 4099.562 kb on - strandat 4099.562 kb on - strandat 4099.562 kb on - strandat 4099.568 kb on + strandat 4099.598 kb on + strandat 4099.599 kb on - strandat 4099.618 kb on - strandat 4101.194 kb on + strandat 4101.194 kb on + strandat 4101.195 kb on - strandat 4101.312 kb on - strandat 4101.366 kb on + strand, within Psest_3929at 4101.366 kb on + strand, within Psest_3929at 4101.366 kb on + strand, within Psest_3929at 4101.366 kb on + strand, within Psest_3929at 4101.366 kb on + strand, within Psest_3929at 4101.366 kb on + strand, within Psest_3929at 4101.367 kb on - strand, within Psest_3929at 4101.367 kb on - strand, within Psest_3929at 4101.367 kb on - strand, within Psest_3929at 4101.367 kb on - strand, within Psest_3929at 4101.372 kb on + strand, within Psest_3929at 4101.372 kb on + strand, within Psest_3929at 4101.373 kb on - strand, within Psest_3929at 4101.439 kb on + strand, within Psest_3929at 4101.529 kb on - strand, within Psest_3929at 4101.926 kb on + strand, within Psest_3930at 4101.926 kb on + strand, within Psest_3930at 4101.926 kb on + strand, within Psest_3930at 4101.926 kb on + strand, within Psest_3930at 4101.926 kb on + strand, within Psest_3930at 4101.926 kb on + strand, within Psest_3930at 4101.927 kb on - strand, within Psest_3930at 4101.927 kb on - strand, within Psest_3930at 4101.927 kb on - strand, within Psest_3930at 4101.927 kb on - strand, within Psest_3930at 4101.927 kb on - strand, within Psest_3930at 4101.927 kb on - strand, within Psest_3930at 4101.927 kb on - strand, within Psest_3930at 4101.927 kb on - strand, within Psest_3930at 4101.927 kb on - strand, within Psest_3930at 4101.927 kb on - strand, within Psest_3930at 4101.927 kb on - strand, within Psest_3930at 4101.927 kb on - strand, within Psest_3930at 4101.927 kb on - strand, within Psest_3930at 4101.927 kb on - strand, within Psest_3930at 4101.932 kb on + strand, within Psest_3930at 4101.932 kb on + strand, within Psest_3930at 4101.932 kb on + strand, within Psest_3930at 4101.932 kb on + strand, within Psest_3930at 4101.932 kb on + strand, within Psest_3930at 4101.932 kb on + strand, within Psest_3930at 4101.932 kb on + strand, within Psest_3930at 4101.932 kb on + strand, within Psest_3930at 4101.932 kb on + strand, within Psest_3930at 4101.932 kb on + strand, within Psest_3930at 4101.932 kb on + strand, within Psest_3930at 4101.933 kb on - strand, within Psest_3930at 4101.933 kb on - strand, within Psest_3930at 4101.933 kb on - strand, within Psest_3930at 4101.933 kb on - strand, within Psest_3930at 4101.933 kb on - strand, within Psest_3930at 4101.933 kb on - strand, within Psest_3930at 4101.933 kb on - strand, within Psest_3930at 4101.933 kb on - strand, within Psest_3930at 4101.933 kb on - strand, within Psest_3930at 4101.933 kb on - strand, within Psest_3930at 4101.933 kb on - strand, within Psest_3930at 4101.933 kb on - strand, within Psest_3930at 4101.933 kb on - strand, within Psest_3930at 4101.933 kb on - strand, within Psest_3930at 4101.934 kb on + strand, within Psest_3930at 4101.934 kb on + strand, within Psest_3930at 4101.935 kb on - strand, within Psest_3930at 4101.936 kb on + strand, within Psest_3930at 4101.936 kb on + strand, within Psest_3930at 4101.936 kb on + strand, within Psest_3930at 4101.936 kb on + strand, within Psest_3930at 4101.936 kb on + strand, within Psest_3930at 4101.936 kb on + strand, within Psest_3930at 4101.936 kb on + strand, within Psest_3930at 4101.936 kb on + strand, within Psest_3930at 4101.936 kb on + strand, within Psest_3930at 4101.936 kb on + strand, within Psest_3930at 4101.936 kb on + strand, within Psest_3930at 4101.936 kb on + strand, within Psest_3930at 4101.936 kb on + strand, within Psest_3930at 4101.936 kb on + strand, within Psest_3930at 4101.936 kb on + strand, within Psest_3930at 4101.936 kb on + strand, within Psest_3930at 4101.936 kb on + strand, within Psest_3930at 4101.936 kb on + strand, within Psest_3930at 4101.936 kb on + strand, within Psest_3930at 4101.936 kb on + strand, within Psest_3930at 4101.936 kb on + strand, within Psest_3930at 4101.936 kb on + strand, within Psest_3930at 4101.936 kb on + strand, within Psest_3930at 4101.936 kb on + strand, within Psest_3930at 4101.936 kb on + strand, within Psest_3930at 4101.936 kb on + strand, within Psest_3930at 4101.936 kb on + strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4102.089 kb on - strand, within Psest_3930

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (N)
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4,098,811 - Psest_3927 0.60 -1.3
4,099,102 - Psest_3927 0.80 -0.6
4,099,102 - Psest_3927 0.80 +0.9
4,099,313 - -0.1
4,099,445 + +0.6
4,099,445 + -0.4
4,099,445 + +0.1
4,099,445 + +0.3
4,099,445 + +1.3
4,099,445 + -1.6
4,099,446 - -3.2
4,099,448 - -0.6
4,099,561 + -1.5
4,099,561 + +0.5
4,099,561 + +0.4
4,099,561 + -0.5
4,099,561 + +1.3
4,099,562 - -2.9
4,099,562 - -1.7
4,099,562 - -1.7
4,099,568 + -1.0
4,099,598 + -1.6
4,099,599 - -3.3
4,099,618 - -4.5
4,101,194 + +1.1
4,101,194 + -1.2
4,101,195 - +0.8
4,101,312 - +0.4
4,101,366 + Psest_3929 0.11 +0.6
4,101,366 + Psest_3929 0.11 +0.2
4,101,366 + Psest_3929 0.11 -0.6
4,101,366 + Psest_3929 0.11 +0.0
4,101,366 + Psest_3929 0.11 -1.2
4,101,366 + Psest_3929 0.11 -0.7
4,101,367 - Psest_3929 0.11 -0.9
4,101,367 - Psest_3929 0.11 +1.2
4,101,367 - Psest_3929 0.11 +0.4
4,101,367 - Psest_3929 0.11 +0.1
4,101,372 + Psest_3929 0.12 -0.8
4,101,372 + Psest_3929 0.12 -0.7
4,101,373 - Psest_3929 0.12 +1.6
4,101,439 + Psest_3929 0.24 +0.2
4,101,529 - Psest_3929 0.40 -1.0
4,101,926 + Psest_3930 0.11 +0.8
4,101,926 + Psest_3930 0.11 -1.3
4,101,926 + Psest_3930 0.11 -0.2
4,101,926 + Psest_3930 0.11 +1.3
4,101,926 + Psest_3930 0.11 +0.9
4,101,926 + Psest_3930 0.11 -0.4
4,101,927 - Psest_3930 0.11 +0.1
4,101,927 - Psest_3930 0.11 -1.2
4,101,927 - Psest_3930 0.11 -0.1
4,101,927 - Psest_3930 0.11 +0.5
4,101,927 - Psest_3930 0.11 +0.3
4,101,927 - Psest_3930 0.11 -0.7
4,101,927 - Psest_3930 0.11 -0.5
4,101,927 - Psest_3930 0.11 +0.4
4,101,927 - Psest_3930 0.11 -0.7
4,101,927 - Psest_3930 0.11 +0.1
4,101,927 - Psest_3930 0.11 -0.2
4,101,927 - Psest_3930 0.11 +0.2
4,101,927 - Psest_3930 0.11 -1.7
4,101,927 - Psest_3930 0.11 +0.4
4,101,932 + Psest_3930 0.12 -1.3
4,101,932 + Psest_3930 0.12 -2.3
4,101,932 + Psest_3930 0.12 +0.6
4,101,932 + Psest_3930 0.12 +1.2
4,101,932 + Psest_3930 0.12 +0.6
4,101,932 + Psest_3930 0.12 -0.5
4,101,932 + Psest_3930 0.12 +0.1
4,101,932 + Psest_3930 0.12 +0.8
4,101,932 + Psest_3930 0.12 -0.5
4,101,932 + Psest_3930 0.12 -1.3
4,101,932 + Psest_3930 0.12 +0.4
4,101,933 - Psest_3930 0.12 -0.3
4,101,933 - Psest_3930 0.12 +0.1
4,101,933 - Psest_3930 0.12 -0.5
4,101,933 - Psest_3930 0.12 +1.0
4,101,933 - Psest_3930 0.12 +1.1
4,101,933 - Psest_3930 0.12 +1.3
4,101,933 - Psest_3930 0.12 -0.1
4,101,933 - Psest_3930 0.12 -1.0
4,101,933 - Psest_3930 0.12 -0.2
4,101,933 - Psest_3930 0.12 -0.7
4,101,933 - Psest_3930 0.12 +0.6
4,101,933 - Psest_3930 0.12 -0.4
4,101,933 - Psest_3930 0.12 -0.3
4,101,933 - Psest_3930 0.12 -0.3
4,101,934 + Psest_3930 0.12 +0.7
4,101,934 + Psest_3930 0.12 +1.1
4,101,935 - Psest_3930 0.12 -0.5
4,101,936 + Psest_3930 0.13 -0.8
4,101,936 + Psest_3930 0.13 +0.6
4,101,936 + Psest_3930 0.13 +0.2
4,101,936 + Psest_3930 0.13 +0.8
4,101,936 + Psest_3930 0.13 +0.4
4,101,936 + Psest_3930 0.13 -0.7
4,101,936 + Psest_3930 0.13 -1.3
4,101,936 + Psest_3930 0.13 +2.3
4,101,936 + Psest_3930 0.13 +0.1
4,101,936 + Psest_3930 0.13 -1.2
4,101,936 + Psest_3930 0.13 -0.4
4,101,936 + Psest_3930 0.13 +0.5
4,101,936 + Psest_3930 0.13 +0.6
4,101,936 + Psest_3930 0.13 +2.3
4,101,936 + Psest_3930 0.13 +0.0
4,101,936 + Psest_3930 0.13 +0.4
4,101,936 + Psest_3930 0.13 +1.2
4,101,936 + Psest_3930 0.13 -2.0
4,101,936 + Psest_3930 0.13 -0.2
4,101,936 + Psest_3930 0.13 -1.0
4,101,936 + Psest_3930 0.13 +0.3
4,101,936 + Psest_3930 0.13 +1.1
4,101,936 + Psest_3930 0.13 +0.2
4,101,936 + Psest_3930 0.13 +0.9
4,101,936 + Psest_3930 0.13 +0.6
4,101,936 + Psest_3930 0.13 -0.4
4,101,936 + Psest_3930 0.13 +0.3
4,101,937 - Psest_3930 0.13 -1.0
4,101,937 - Psest_3930 0.13 +1.6
4,101,937 - Psest_3930 0.13 +0.7
4,101,937 - Psest_3930 0.13 -0.9
4,101,937 - Psest_3930 0.13 -0.4
4,101,937 - Psest_3930 0.13 +1.1
4,101,937 - Psest_3930 0.13 +0.0
4,101,937 - Psest_3930 0.13 -0.3
4,101,937 - Psest_3930 0.13 +0.1
4,101,937 - Psest_3930 0.13 -0.5
4,101,937 - Psest_3930 0.13 +0.9
4,101,937 - Psest_3930 0.13 +1.0
4,101,937 - Psest_3930 0.13 -0.8
4,101,937 - Psest_3930 0.13 -0.3
4,101,937 - Psest_3930 0.13 -0.9
4,101,937 - Psest_3930 0.13 +0.1
4,101,937 - Psest_3930 0.13 -0.7
4,101,937 - Psest_3930 0.13 -0.9
4,101,937 - Psest_3930 0.13 -0.4
4,101,937 - Psest_3930 0.13 -0.2
4,101,937 - Psest_3930 0.13 -0.0
4,101,937 - Psest_3930 0.13 -0.2
4,101,937 - Psest_3930 0.13 +0.2
4,101,937 - Psest_3930 0.13 -0.2
4,101,937 - Psest_3930 0.13 -1.5
4,101,937 - Psest_3930 0.13 +0.3
4,101,937 - Psest_3930 0.13 +0.1
4,101,937 - Psest_3930 0.13 -0.2
4,101,937 - Psest_3930 0.13 +0.2
4,101,937 - Psest_3930 0.13 +0.3
4,101,937 - Psest_3930 0.13 +0.1
4,101,937 - Psest_3930 0.13 -0.6
4,101,937 - Psest_3930 0.13 -0.0
4,101,937 - Psest_3930 0.13 -0.1
4,101,937 - Psest_3930 0.13 -0.0
4,101,937 - Psest_3930 0.13 -0.5
4,101,937 - Psest_3930 0.13 +1.1
4,101,937 - Psest_3930 0.13 -0.6
4,102,089 - Psest_3930 0.37 +0.2

Or see this region's nucleotide sequence