Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3368

Experiment: L-Alanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3366 and Psest_3367 are separated by 122 nucleotidesPsest_3367 and Psest_3368 are separated by 148 nucleotidesPsest_3368 and Psest_3369 are separated by 135 nucleotidesPsest_3369 and Psest_3370 are separated by 99 nucleotides Psest_3366: Psest_3366 - Biosynthetic arginine decarboxylase (EC 4.1.1.19) (from data), at 3,534,786 to 3,536,699 _3366 Psest_3367: Psest_3367 - translation initation factor SUI1, putative, prokaryotic, at 3,536,822 to 3,537,193 _3367 Psest_3368: Psest_3368 - glycine oxidase ThiO, at 3,537,342 to 3,538,451 _3368 Psest_3369: Psest_3369 - prepilin-type N-terminal cleavage/methylation domain, at 3,538,587 to 3,539,123 _3369 Psest_3370: Psest_3370 - prepilin-type N-terminal cleavage/methylation domain, at 3,539,223 to 3,539,714 _3370 Position (kb) 3537 3538 3539Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3536.392 kb on + strand, within Psest_3366at 3536.392 kb on + strand, within Psest_3366at 3536.392 kb on + strand, within Psest_3366at 3536.392 kb on + strand, within Psest_3366at 3536.393 kb on - strand, within Psest_3366at 3536.393 kb on - strand, within Psest_3366at 3536.393 kb on - strand, within Psest_3366at 3536.396 kb on + strand, within Psest_3366at 3536.396 kb on + strand, within Psest_3366at 3536.396 kb on + strand, within Psest_3366at 3536.396 kb on + strand, within Psest_3366at 3536.396 kb on + strand, within Psest_3366at 3536.396 kb on + strand, within Psest_3366at 3536.397 kb on - strand, within Psest_3366at 3536.397 kb on - strand, within Psest_3366at 3536.397 kb on - strand, within Psest_3366at 3536.397 kb on - strand, within Psest_3366at 3536.397 kb on - strand, within Psest_3366at 3536.397 kb on - strand, within Psest_3366at 3536.404 kb on + strand, within Psest_3366at 3536.605 kb on + strandat 3536.606 kb on - strandat 3536.633 kb on - strandat 3536.633 kb on - strandat 3536.633 kb on - strandat 3536.633 kb on - strandat 3536.636 kb on + strandat 3536.636 kb on + strandat 3536.636 kb on + strandat 3536.637 kb on - strandat 3536.637 kb on - strandat 3536.678 kb on + strandat 3536.679 kb on - strandat 3536.679 kb on - strandat 3536.679 kb on - strandat 3536.685 kb on - strandat 3536.685 kb on - strandat 3536.685 kb on - strandat 3536.685 kb on - strandat 3536.692 kb on - strandat 3536.724 kb on + strandat 3536.725 kb on - strandat 3536.725 kb on - strandat 3537.147 kb on + strand, within Psest_3367at 3537.251 kb on - strandat 3537.295 kb on + strandat 3537.295 kb on + strandat 3537.296 kb on - strandat 3537.296 kb on - strandat 3537.296 kb on - strandat 3537.296 kb on - strandat 3537.296 kb on - strandat 3537.516 kb on + strand, within Psest_3368at 3537.516 kb on + strand, within Psest_3368at 3537.517 kb on - strand, within Psest_3368at 3537.517 kb on - strand, within Psest_3368at 3537.517 kb on - strand, within Psest_3368at 3537.517 kb on - strand, within Psest_3368at 3537.517 kb on - strand, within Psest_3368at 3537.517 kb on - strand, within Psest_3368at 3537.517 kb on - strand, within Psest_3368at 3537.517 kb on - strand, within Psest_3368at 3537.517 kb on - strand, within Psest_3368at 3537.517 kb on - strand, within Psest_3368at 3537.518 kb on + strand, within Psest_3368at 3537.518 kb on + strand, within Psest_3368at 3537.518 kb on + strand, within Psest_3368at 3537.518 kb on + strand, within Psest_3368at 3537.518 kb on + strand, within Psest_3368at 3537.518 kb on + strand, within Psest_3368at 3537.518 kb on + strand, within Psest_3368at 3537.518 kb on + strand, within Psest_3368at 3537.518 kb on + strand, within Psest_3368at 3537.519 kb on - strand, within Psest_3368at 3537.519 kb on - strand, within Psest_3368at 3537.519 kb on - strand, within Psest_3368at 3537.519 kb on - strand, within Psest_3368at 3537.519 kb on - strand, within Psest_3368at 3537.519 kb on - strand, within Psest_3368at 3537.519 kb on - strand, within Psest_3368at 3537.519 kb on - strand, within Psest_3368at 3537.519 kb on - strand, within Psest_3368at 3537.519 kb on - strand, within Psest_3368at 3537.519 kb on - strand, within Psest_3368at 3537.519 kb on - strand, within Psest_3368at 3537.519 kb on - strand, within Psest_3368at 3537.519 kb on - strand, within Psest_3368at 3537.519 kb on - strand, within Psest_3368at 3537.519 kb on - strand, within Psest_3368at 3537.519 kb on - strand, within Psest_3368at 3537.519 kb on - strand, within Psest_3368at 3537.519 kb on - strand, within Psest_3368at 3537.519 kb on - strand, within Psest_3368at 3537.519 kb on - strand, within Psest_3368at 3537.519 kb on - strand, within Psest_3368at 3537.519 kb on - strand, within Psest_3368at 3537.519 kb on - strand, within Psest_3368at 3537.520 kb on + strand, within Psest_3368at 3537.520 kb on + strand, within Psest_3368at 3537.520 kb on + strand, within Psest_3368at 3537.520 kb on + strand, within Psest_3368at 3537.520 kb on + strand, within Psest_3368at 3537.520 kb on + strand, within Psest_3368at 3537.520 kb on + strand, within Psest_3368at 3537.520 kb on + strand, within Psest_3368at 3537.520 kb on + strand, within Psest_3368at 3537.520 kb on + strand, within Psest_3368at 3537.520 kb on + strand, within Psest_3368at 3537.520 kb on + strand, within Psest_3368at 3537.520 kb on + strand, within Psest_3368at 3537.520 kb on + strand, within Psest_3368at 3537.521 kb on - strand, within Psest_3368at 3537.521 kb on - strand, within Psest_3368at 3537.521 kb on - strand, within Psest_3368at 3537.521 kb on - strand, within Psest_3368at 3537.521 kb on - strand, within Psest_3368at 3537.521 kb on - strand, within Psest_3368at 3537.521 kb on - strand, within Psest_3368at 3537.521 kb on - strand, within Psest_3368at 3537.521 kb on - strand, within Psest_3368at 3537.521 kb on - strand, within Psest_3368at 3537.521 kb on - strand, within Psest_3368at 3537.521 kb on - strand, within Psest_3368at 3537.521 kb on - strand, within Psest_3368at 3537.521 kb on - strand, within Psest_3368at 3538.019 kb on + strand, within Psest_3368at 3538.036 kb on + strand, within Psest_3368at 3538.037 kb on - strand, within Psest_3368at 3538.037 kb on - strand, within Psest_3368at 3538.037 kb on - strand, within Psest_3368at 3538.037 kb on - strand, within Psest_3368at 3538.051 kb on + strand, within Psest_3368at 3538.052 kb on - strand, within Psest_3368at 3538.052 kb on - strand, within Psest_3368at 3538.052 kb on - strand, within Psest_3368at 3538.172 kb on - strand, within Psest_3368at 3538.241 kb on - strand, within Psest_3368at 3538.286 kb on - strand, within Psest_3368at 3538.298 kb on - strand, within Psest_3368at 3538.584 kb on + strandat 3538.584 kb on + strandat 3538.584 kb on + strandat 3538.584 kb on + strandat 3538.584 kb on + strandat 3538.584 kb on + strandat 3538.584 kb on + strandat 3538.585 kb on - strandat 3538.585 kb on - strandat 3538.585 kb on - strandat 3538.585 kb on - strandat 3538.585 kb on - strandat 3538.585 kb on - strandat 3538.585 kb on - strandat 3538.585 kb on - strandat 3538.585 kb on - strandat 3538.585 kb on - strandat 3538.585 kb on - strandat 3538.585 kb on - strandat 3538.585 kb on - strandat 3538.604 kb on + strandat 3538.655 kb on + strand, within Psest_3369at 3538.655 kb on + strand, within Psest_3369at 3538.656 kb on - strand, within Psest_3369at 3538.656 kb on - strand, within Psest_3369at 3538.656 kb on - strand, within Psest_3369at 3538.660 kb on + strand, within Psest_3369at 3538.660 kb on + strand, within Psest_3369at 3538.660 kb on + strand, within Psest_3369at 3538.661 kb on - strand, within Psest_3369at 3538.661 kb on - strand, within Psest_3369at 3538.661 kb on - strand, within Psest_3369at 3538.802 kb on + strand, within Psest_3369at 3538.802 kb on + strand, within Psest_3369at 3538.802 kb on + strand, within Psest_3369at 3538.803 kb on - strand, within Psest_3369at 3538.803 kb on - strand, within Psest_3369at 3538.859 kb on + strand, within Psest_3369at 3538.860 kb on - strand, within Psest_3369at 3538.860 kb on - strand, within Psest_3369at 3538.862 kb on - strand, within Psest_3369at 3538.934 kb on + strand, within Psest_3369at 3538.935 kb on - strand, within Psest_3369at 3538.935 kb on - strand, within Psest_3369at 3538.935 kb on - strand, within Psest_3369at 3538.939 kb on - strand, within Psest_3369at 3538.939 kb on - strand, within Psest_3369at 3538.939 kb on - strand, within Psest_3369at 3538.939 kb on - strand, within Psest_3369at 3539.007 kb on - strand, within Psest_3369at 3539.278 kb on + strand, within Psest_3370at 3539.278 kb on + strand, within Psest_3370at 3539.279 kb on - strand, within Psest_3370at 3539.324 kb on - strand, within Psest_3370at 3539.361 kb on - strand, within Psest_3370at 3539.361 kb on - strand, within Psest_3370at 3539.361 kb on - strand, within Psest_3370at 3539.377 kb on + strand, within Psest_3370at 3539.378 kb on - strand, within Psest_3370at 3539.378 kb on - strand, within Psest_3370at 3539.378 kb on - strand, within Psest_3370at 3539.378 kb on - strand, within Psest_3370

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (N)
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3,536,392 + Psest_3366 0.84 +0.8
3,536,392 + Psest_3366 0.84 +2.4
3,536,392 + Psest_3366 0.84 +0.7
3,536,392 + Psest_3366 0.84 +1.0
3,536,393 - Psest_3366 0.84 +0.3
3,536,393 - Psest_3366 0.84 +0.7
3,536,393 - Psest_3366 0.84 +0.5
3,536,396 + Psest_3366 0.84 -1.1
3,536,396 + Psest_3366 0.84 +0.9
3,536,396 + Psest_3366 0.84 +0.7
3,536,396 + Psest_3366 0.84 +1.5
3,536,396 + Psest_3366 0.84 +2.7
3,536,396 + Psest_3366 0.84 +0.7
3,536,397 - Psest_3366 0.84 +0.6
3,536,397 - Psest_3366 0.84 -1.4
3,536,397 - Psest_3366 0.84 +0.9
3,536,397 - Psest_3366 0.84 +1.6
3,536,397 - Psest_3366 0.84 +0.4
3,536,397 - Psest_3366 0.84 +1.2
3,536,404 + Psest_3366 0.85 +1.5
3,536,605 + +0.5
3,536,606 - +0.3
3,536,633 - +0.2
3,536,633 - +1.3
3,536,633 - +0.6
3,536,633 - +2.6
3,536,636 + +0.6
3,536,636 + +0.3
3,536,636 + +1.8
3,536,637 - +0.5
3,536,637 - +1.2
3,536,678 + +1.3
3,536,679 - +0.5
3,536,679 - -0.1
3,536,679 - +0.5
3,536,685 - +0.9
3,536,685 - +0.4
3,536,685 - +1.7
3,536,685 - +0.6
3,536,692 - +1.2
3,536,724 + +1.8
3,536,725 - +0.2
3,536,725 - +0.8
3,537,147 + Psest_3367 0.87 +0.9
3,537,251 - +0.2
3,537,295 + +1.0
3,537,295 + +0.2
3,537,296 - +1.6
3,537,296 - -0.1
3,537,296 - -0.1
3,537,296 - +1.0
3,537,296 - +0.4
3,537,516 + Psest_3368 0.16 -0.4
3,537,516 + Psest_3368 0.16 +1.2
3,537,517 - Psest_3368 0.16 -0.6
3,537,517 - Psest_3368 0.16 -2.5
3,537,517 - Psest_3368 0.16 -1.1
3,537,517 - Psest_3368 0.16 -0.7
3,537,517 - Psest_3368 0.16 -1.1
3,537,517 - Psest_3368 0.16 +0.2
3,537,517 - Psest_3368 0.16 +0.2
3,537,517 - Psest_3368 0.16 +0.5
3,537,517 - Psest_3368 0.16 -2.0
3,537,517 - Psest_3368 0.16 +0.5
3,537,518 + Psest_3368 0.16 -0.8
3,537,518 + Psest_3368 0.16 -0.6
3,537,518 + Psest_3368 0.16 +0.4
3,537,518 + Psest_3368 0.16 +0.4
3,537,518 + Psest_3368 0.16 +0.2
3,537,518 + Psest_3368 0.16 -0.2
3,537,518 + Psest_3368 0.16 +0.1
3,537,518 + Psest_3368 0.16 -0.1
3,537,518 + Psest_3368 0.16 +0.3
3,537,519 - Psest_3368 0.16 +0.1
3,537,519 - Psest_3368 0.16 -1.5
3,537,519 - Psest_3368 0.16 +0.5
3,537,519 - Psest_3368 0.16 +0.3
3,537,519 - Psest_3368 0.16 -0.5
3,537,519 - Psest_3368 0.16 +0.2
3,537,519 - Psest_3368 0.16 -1.1
3,537,519 - Psest_3368 0.16 +0.7
3,537,519 - Psest_3368 0.16 -0.8
3,537,519 - Psest_3368 0.16 -1.1
3,537,519 - Psest_3368 0.16 +0.4
3,537,519 - Psest_3368 0.16 -1.0
3,537,519 - Psest_3368 0.16 +0.6
3,537,519 - Psest_3368 0.16 +0.3
3,537,519 - Psest_3368 0.16 +0.1
3,537,519 - Psest_3368 0.16 -1.8
3,537,519 - Psest_3368 0.16 -0.0
3,537,519 - Psest_3368 0.16 +1.2
3,537,519 - Psest_3368 0.16 -0.6
3,537,519 - Psest_3368 0.16 -0.2
3,537,519 - Psest_3368 0.16 -0.1
3,537,519 - Psest_3368 0.16 +1.2
3,537,519 - Psest_3368 0.16 -1.4
3,537,519 - Psest_3368 0.16 -0.5
3,537,520 + Psest_3368 0.16 -0.3
3,537,520 + Psest_3368 0.16 -0.0
3,537,520 + Psest_3368 0.16 -0.4
3,537,520 + Psest_3368 0.16 -0.1
3,537,520 + Psest_3368 0.16 -0.2
3,537,520 + Psest_3368 0.16 -1.1
3,537,520 + Psest_3368 0.16 +1.6
3,537,520 + Psest_3368 0.16 +0.4
3,537,520 + Psest_3368 0.16 -0.4
3,537,520 + Psest_3368 0.16 +1.5
3,537,520 + Psest_3368 0.16 -0.8
3,537,520 + Psest_3368 0.16 -0.1
3,537,520 + Psest_3368 0.16 -0.4
3,537,520 + Psest_3368 0.16 +1.2
3,537,521 - Psest_3368 0.16 -1.0
3,537,521 - Psest_3368 0.16 +1.2
3,537,521 - Psest_3368 0.16 -0.1
3,537,521 - Psest_3368 0.16 +0.3
3,537,521 - Psest_3368 0.16 +0.2
3,537,521 - Psest_3368 0.16 -1.3
3,537,521 - Psest_3368 0.16 +0.0
3,537,521 - Psest_3368 0.16 -0.1
3,537,521 - Psest_3368 0.16 -0.8
3,537,521 - Psest_3368 0.16 -0.3
3,537,521 - Psest_3368 0.16 -0.9
3,537,521 - Psest_3368 0.16 -0.3
3,537,521 - Psest_3368 0.16 +0.1
3,537,521 - Psest_3368 0.16 -0.2
3,538,019 + Psest_3368 0.61 +0.7
3,538,036 + Psest_3368 0.63 -0.7
3,538,037 - Psest_3368 0.63 +1.8
3,538,037 - Psest_3368 0.63 -0.1
3,538,037 - Psest_3368 0.63 +0.7
3,538,037 - Psest_3368 0.63 +0.5
3,538,051 + Psest_3368 0.64 -1.1
3,538,052 - Psest_3368 0.64 +1.1
3,538,052 - Psest_3368 0.64 -0.3
3,538,052 - Psest_3368 0.64 -1.0
3,538,172 - Psest_3368 0.75 -0.3
3,538,241 - Psest_3368 0.81 +1.4
3,538,286 - Psest_3368 0.85 -0.3
3,538,298 - Psest_3368 0.86 +0.1
3,538,584 + +0.8
3,538,584 + -0.1
3,538,584 + +0.3
3,538,584 + +0.6
3,538,584 + -1.0
3,538,584 + +0.7
3,538,584 + -2.1
3,538,585 - +0.0
3,538,585 - +0.4
3,538,585 - -1.0
3,538,585 - +1.1
3,538,585 - -0.3
3,538,585 - -0.4
3,538,585 - +0.2
3,538,585 - +0.1
3,538,585 - -0.5
3,538,585 - +0.4
3,538,585 - +0.4
3,538,585 - +0.7
3,538,585 - +0.9
3,538,604 + -1.4
3,538,655 + Psest_3369 0.13 -1.0
3,538,655 + Psest_3369 0.13 -0.7
3,538,656 - Psest_3369 0.13 -0.5
3,538,656 - Psest_3369 0.13 +0.3
3,538,656 - Psest_3369 0.13 +0.8
3,538,660 + Psest_3369 0.14 +0.9
3,538,660 + Psest_3369 0.14 +0.7
3,538,660 + Psest_3369 0.14 -0.2
3,538,661 - Psest_3369 0.14 +0.5
3,538,661 - Psest_3369 0.14 +0.8
3,538,661 - Psest_3369 0.14 -2.9
3,538,802 + Psest_3369 0.40 -0.1
3,538,802 + Psest_3369 0.40 -0.0
3,538,802 + Psest_3369 0.40 -0.4
3,538,803 - Psest_3369 0.40 -0.6
3,538,803 - Psest_3369 0.40 +0.2
3,538,859 + Psest_3369 0.51 +0.6
3,538,860 - Psest_3369 0.51 -0.7
3,538,860 - Psest_3369 0.51 -0.2
3,538,862 - Psest_3369 0.51 -0.1
3,538,934 + Psest_3369 0.65 -0.9
3,538,935 - Psest_3369 0.65 +0.9
3,538,935 - Psest_3369 0.65 +0.9
3,538,935 - Psest_3369 0.65 -0.1
3,538,939 - Psest_3369 0.66 -0.6
3,538,939 - Psest_3369 0.66 +2.1
3,538,939 - Psest_3369 0.66 +0.1
3,538,939 - Psest_3369 0.66 +1.0
3,539,007 - Psest_3369 0.78 -1.0
3,539,278 + Psest_3370 0.11 -0.2
3,539,278 + Psest_3370 0.11 -0.8
3,539,279 - Psest_3370 0.11 +2.0
3,539,324 - Psest_3370 0.21 +2.4
3,539,361 - Psest_3370 0.28 +1.4
3,539,361 - Psest_3370 0.28 +2.9
3,539,361 - Psest_3370 0.28 +1.5
3,539,377 + Psest_3370 0.31 -0.5
3,539,378 - Psest_3370 0.32 +2.5
3,539,378 - Psest_3370 0.32 +1.9
3,539,378 - Psest_3370 0.32 +0.7
3,539,378 - Psest_3370 0.32 +1.3

Or see this region's nucleotide sequence