Experiment: L-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2411 and Psest_2412 are separated by 43 nucleotides Psest_2412 and Psest_2413 are separated by 29 nucleotides Psest_2413 and Psest_2414 overlap by 1 nucleotides
Psest_2411: Psest_2411 - PAS domain S-box, at 2,568,127 to 2,571,120
_2411
Psest_2412: Psest_2412 - Predicted phosphatase, at 2,571,164 to 2,573,125
_2412
Psest_2413: Psest_2413 - Periplasmic protein TonB, links inner and outer membranes, at 2,573,155 to 2,573,943
_2413
Psest_2414: Psest_2414 - TolR protein, at 2,573,943 to 2,574,407
_2414
Position (kb)
2571
2572
2573
2574 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2570.291 kb on + strand, within Psest_2411 at 2570.291 kb on + strand, within Psest_2411 at 2570.291 kb on + strand, within Psest_2411 at 2570.291 kb on + strand, within Psest_2411 at 2570.291 kb on + strand, within Psest_2411 at 2571.307 kb on + strand at 2571.336 kb on - strand at 2571.351 kb on - strand at 2571.351 kb on - strand at 2571.723 kb on + strand, within Psest_2412 at 2571.723 kb on + strand, within Psest_2412 at 2571.723 kb on + strand, within Psest_2412 at 2571.723 kb on + strand, within Psest_2412 at 2571.724 kb on - strand, within Psest_2412 at 2571.921 kb on + strand, within Psest_2412 at 2571.921 kb on + strand, within Psest_2412 at 2571.921 kb on + strand, within Psest_2412 at 2571.921 kb on + strand, within Psest_2412 at 2571.921 kb on + strand, within Psest_2412 at 2571.921 kb on + strand, within Psest_2412 at 2571.922 kb on - strand, within Psest_2412 at 2571.922 kb on - strand, within Psest_2412 at 2571.922 kb on - strand, within Psest_2412 at 2571.922 kb on - strand, within Psest_2412 at 2571.922 kb on - strand, within Psest_2412 at 2571.922 kb on - strand, within Psest_2412 at 2571.922 kb on - strand, within Psest_2412 at 2571.922 kb on - strand, within Psest_2412 at 2571.999 kb on + strand, within Psest_2412 at 2572.000 kb on - strand, within Psest_2412 at 2572.000 kb on - strand, within Psest_2412 at 2572.005 kb on + strand, within Psest_2412 at 2572.005 kb on + strand, within Psest_2412 at 2572.005 kb on + strand, within Psest_2412 at 2572.005 kb on + strand, within Psest_2412 at 2572.005 kb on + strand, within Psest_2412 at 2572.006 kb on - strand, within Psest_2412 at 2572.006 kb on - strand, within Psest_2412 at 2572.006 kb on - strand, within Psest_2412 at 2572.006 kb on - strand, within Psest_2412 at 2572.006 kb on - strand, within Psest_2412 at 2572.006 kb on - strand, within Psest_2412 at 2572.006 kb on - strand, within Psest_2412 at 2572.032 kb on + strand, within Psest_2412 at 2572.033 kb on - strand, within Psest_2412 at 2572.033 kb on - strand, within Psest_2412 at 2572.139 kb on + strand, within Psest_2412 at 2572.139 kb on + strand, within Psest_2412 at 2572.140 kb on - strand, within Psest_2412 at 2572.179 kb on + strand, within Psest_2412 at 2572.210 kb on + strand, within Psest_2412 at 2572.210 kb on + strand, within Psest_2412 at 2572.245 kb on + strand, within Psest_2412 at 2572.286 kb on - strand, within Psest_2412 at 2572.332 kb on + strand, within Psest_2412 at 2572.332 kb on + strand, within Psest_2412 at 2572.332 kb on + strand, within Psest_2412 at 2572.332 kb on + strand, within Psest_2412 at 2572.332 kb on + strand, within Psest_2412 at 2572.332 kb on + strand, within Psest_2412 at 2572.333 kb on - strand, within Psest_2412 at 2572.333 kb on - strand, within Psest_2412 at 2572.333 kb on - strand, within Psest_2412 at 2572.333 kb on - strand, within Psest_2412 at 2572.333 kb on - strand, within Psest_2412 at 2572.333 kb on - strand, within Psest_2412 at 2572.333 kb on - strand, within Psest_2412 at 2572.333 kb on - strand, within Psest_2412 at 2572.362 kb on + strand, within Psest_2412 at 2572.362 kb on + strand, within Psest_2412 at 2572.362 kb on + strand, within Psest_2412 at 2572.512 kb on + strand, within Psest_2412 at 2572.668 kb on + strand, within Psest_2412 at 2572.854 kb on + strand, within Psest_2412 at 2572.854 kb on + strand, within Psest_2412 at 2572.906 kb on + strand, within Psest_2412 at 2573.331 kb on + strand, within Psest_2413 at 2573.331 kb on + strand, within Psest_2413 at 2573.331 kb on + strand, within Psest_2413 at 2573.331 kb on + strand, within Psest_2413 at 2573.331 kb on + strand, within Psest_2413 at 2573.332 kb on - strand, within Psest_2413 at 2573.332 kb on - strand, within Psest_2413 at 2573.333 kb on + strand, within Psest_2413 at 2573.333 kb on + strand, within Psest_2413 at 2573.334 kb on - strand, within Psest_2413 at 2574.070 kb on + strand, within Psest_2414 at 2574.071 kb on - strand, within Psest_2414
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (N) remove 2,570,291 + Psest_2411 0.72 -0.4 2,570,291 + Psest_2411 0.72 -1.4 2,570,291 + Psest_2411 0.72 +0.1 2,570,291 + Psest_2411 0.72 +1.5 2,570,291 + Psest_2411 0.72 +0.4 2,571,307 + -0.4 2,571,336 - +0.9 2,571,351 - +0.2 2,571,351 - +0.9 2,571,723 + Psest_2412 0.28 -1.9 2,571,723 + Psest_2412 0.28 +1.7 2,571,723 + Psest_2412 0.28 +0.1 2,571,723 + Psest_2412 0.28 -2.2 2,571,724 - Psest_2412 0.29 -0.1 2,571,921 + Psest_2412 0.39 -0.1 2,571,921 + Psest_2412 0.39 -0.6 2,571,921 + Psest_2412 0.39 -0.6 2,571,921 + Psest_2412 0.39 -0.9 2,571,921 + Psest_2412 0.39 +0.2 2,571,921 + Psest_2412 0.39 -2.5 2,571,922 - Psest_2412 0.39 -0.5 2,571,922 - Psest_2412 0.39 -0.3 2,571,922 - Psest_2412 0.39 +0.0 2,571,922 - Psest_2412 0.39 +0.9 2,571,922 - Psest_2412 0.39 -1.1 2,571,922 - Psest_2412 0.39 +0.1 2,571,922 - Psest_2412 0.39 -0.7 2,571,922 - Psest_2412 0.39 +1.2 2,571,999 + Psest_2412 0.43 -0.9 2,572,000 - Psest_2412 0.43 +0.2 2,572,000 - Psest_2412 0.43 -0.4 2,572,005 + Psest_2412 0.43 +0.5 2,572,005 + Psest_2412 0.43 +0.9 2,572,005 + Psest_2412 0.43 +0.6 2,572,005 + Psest_2412 0.43 -1.1 2,572,005 + Psest_2412 0.43 -2.4 2,572,006 - Psest_2412 0.43 +1.4 2,572,006 - Psest_2412 0.43 +0.4 2,572,006 - Psest_2412 0.43 +0.1 2,572,006 - Psest_2412 0.43 -1.1 2,572,006 - Psest_2412 0.43 -0.1 2,572,006 - Psest_2412 0.43 -1.2 2,572,006 - Psest_2412 0.43 +0.9 2,572,032 + Psest_2412 0.44 -1.0 2,572,033 - Psest_2412 0.44 -0.2 2,572,033 - Psest_2412 0.44 +1.3 2,572,139 + Psest_2412 0.50 -0.2 2,572,139 + Psest_2412 0.50 -0.4 2,572,140 - Psest_2412 0.50 -1.9 2,572,179 + Psest_2412 0.52 -0.2 2,572,210 + Psest_2412 0.53 +0.4 2,572,210 + Psest_2412 0.53 -0.6 2,572,245 + Psest_2412 0.55 -1.1 2,572,286 - Psest_2412 0.57 -0.7 2,572,332 + Psest_2412 0.60 -1.2 2,572,332 + Psest_2412 0.60 +0.4 2,572,332 + Psest_2412 0.60 -0.4 2,572,332 + Psest_2412 0.60 -0.2 2,572,332 + Psest_2412 0.60 +0.5 2,572,332 + Psest_2412 0.60 -0.3 2,572,333 - Psest_2412 0.60 +0.3 2,572,333 - Psest_2412 0.60 -0.6 2,572,333 - Psest_2412 0.60 -0.4 2,572,333 - Psest_2412 0.60 +0.9 2,572,333 - Psest_2412 0.60 -0.8 2,572,333 - Psest_2412 0.60 -0.3 2,572,333 - Psest_2412 0.60 +1.5 2,572,333 - Psest_2412 0.60 -0.1 2,572,362 + Psest_2412 0.61 -0.3 2,572,362 + Psest_2412 0.61 -3.1 2,572,362 + Psest_2412 0.61 +0.9 2,572,512 + Psest_2412 0.69 +0.9 2,572,668 + Psest_2412 0.77 -1.4 2,572,854 + Psest_2412 0.86 -0.0 2,572,854 + Psest_2412 0.86 +0.4 2,572,906 + Psest_2412 0.89 +1.5 2,573,331 + Psest_2413 0.22 -1.0 2,573,331 + Psest_2413 0.22 -0.6 2,573,331 + Psest_2413 0.22 -1.6 2,573,331 + Psest_2413 0.22 +1.0 2,573,331 + Psest_2413 0.22 -1.4 2,573,332 - Psest_2413 0.22 -0.0 2,573,332 - Psest_2413 0.22 -2.0 2,573,333 + Psest_2413 0.23 -0.0 2,573,333 + Psest_2413 0.23 -0.0 2,573,334 - Psest_2413 0.23 -1.0 2,574,070 + Psest_2414 0.27 +0.3 2,574,071 - Psest_2414 0.28 +0.9
Or see this region's nucleotide sequence