Strain Fitness in Shewanella amazonensis SB2B around Sama_0822

Experiment: pyruvate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pyruvate
1,004,171	+		Sama_0820	0.76	-2.3
1,004,171	+		Sama_0820	0.76	-0.8
1,004,171	+		Sama_0820	0.76	+0.0
1,004,172	-		Sama_0820	0.76	-2.1
1,004,172	-		Sama_0820	0.76	-2.1
1,004,172	-		Sama_0820	0.76	+1.4
1,004,172	-		Sama_0820	0.76	-1.3
1,004,172	-		Sama_0820	0.76	-0.5
1,004,172	-		Sama_0820	0.76	-1.1
1,004,175	+		Sama_0820	0.76	-1.8
1,004,175	+		Sama_0820	0.76	-0.4
1,004,175	+		Sama_0820	0.76	-0.4
1,004,175	+		Sama_0820	0.76	+0.2
1,004,175	+		Sama_0820	0.76	+1.0
1,004,175	+		Sama_0820	0.76	-1.3
1,004,175	+		Sama_0820	0.76	+0.1
1,004,175	+		Sama_0820	0.76	+0.3
1,004,176	-		Sama_0820	0.76	-1.6
1,004,191	+		Sama_0820	0.78	+0.9
1,004,191	+		Sama_0820	0.78	-2.6
1,004,191	+		Sama_0820	0.78	-1.1
1,004,191	+		Sama_0820	0.78	+0.7
1,004,192	-		Sama_0820	0.79	-1.8
1,004,202	+		Sama_0820	0.80	-0.3
1,004,203	-		Sama_0820	0.80	-0.1
1,004,203	-		Sama_0820	0.80	-0.3
1,004,203	-		Sama_0820	0.80	-0.3
1,004,203	-		Sama_0820	0.80	+1.5
1,004,203	-		Sama_0820	0.80	-1.3
1,004,258	-		Sama_0820	0.87	-0.6
1,004,258	-		Sama_0820	0.87	+1.9
1,004,258	-		Sama_0820	0.87	-2.1
1,004,258	-		Sama_0820	0.87	-0.3
1,004,321	-				+0.7
1,004,321	-				-0.3
1,004,378	-				-1.3
1,004,381	+				+1.0
1,004,399	-				-1.3
1,004,399	-				+0.6
1,004,406	+				-2.1
1,004,416	+				-1.1
1,004,444	+				+1.2
1,004,556	+				+0.1
1,004,568	+				-0.2
1,004,569	-				+0.9
1,004,569	-				-0.6
1,004,569	-				-0.2
1,004,569	-				+0.7
1,004,581	+				-2.3
1,004,588	+				+0.7
1,004,588	+				+0.1
1,004,588	+				+1.4
1,004,588	+				+0.2
1,004,588	+				-0.1
1,004,589	-				-0.5
1,004,589	-				-0.1
1,004,589	-				+0.2
1,004,609	+				+1.6
1,004,610	-				-2.7
1,004,610	-				-0.3
1,004,626	+				+0.3
1,004,627	-				+0.3
1,004,675	+		Sama_0821	0.19	-0.5
1,004,675	+		Sama_0821	0.19	+0.3
1,004,676	-		Sama_0821	0.19	-0.6
1,004,676	-		Sama_0821	0.19	-0.6
1,004,678	+		Sama_0821	0.20	-0.7
1,004,678	+		Sama_0821	0.20	+0.2
1,004,678	+		Sama_0821	0.20	+1.2
1,004,678	+		Sama_0821	0.20	-1.4
1,004,678	+		Sama_0821	0.20	+0.2
1,004,678	+		Sama_0821	0.20	+0.6
1,004,679	-		Sama_0821	0.20	+1.1
1,004,679	-		Sama_0821	0.20	-1.3
1,004,679	-		Sama_0821	0.20	-0.4
1,004,679	-		Sama_0821	0.20	+0.4
1,004,679	-		Sama_0821	0.20	-2.1
1,004,679	-		Sama_0821	0.20	+1.5
1,004,679	-		Sama_0821	0.20	-0.3
1,004,681	+		Sama_0821	0.21	-0.5
1,004,681	+		Sama_0821	0.21	-2.1
1,004,681	+		Sama_0821	0.21	+1.7
1,004,681	+		Sama_0821	0.21	+1.7
1,004,681	+		Sama_0821	0.21	-1.1
1,004,682	-		Sama_0821	0.21	+1.1
1,004,682	-		Sama_0821	0.21	+0.4
1,004,682	-		Sama_0821	0.21	+1.2
1,004,688	+		Sama_0821	0.23	+1.0
1,004,761	+		Sama_0821	0.45	-0.3
1,004,761	+		Sama_0821	0.45	-0.5
1,004,801	+		Sama_0821	0.56	+0.6
1,004,822	+		Sama_0821	0.63	-0.3
1,004,823	-		Sama_0821	0.63	-1.0
1,004,823	-		Sama_0821	0.63	-0.8
1,004,856	+		Sama_0821	0.73	+1.5
1,004,856	+		Sama_0821	0.73	+0.6
1,004,857	-		Sama_0821	0.73	-0.1
1,004,857	-		Sama_0821	0.73	-0.1
1,004,879	+		Sama_0821	0.79	+1.0
1,004,879	+		Sama_0821	0.79	-0.4
1,004,879	+		Sama_0821	0.79	-0.1
1,004,879	+		Sama_0821	0.79	+0.0
1,004,880	-		Sama_0821	0.80	-0.3
1,004,880	-		Sama_0821	0.80	-0.5
1,004,880	-		Sama_0821	0.80	+0.7
1,004,880	-		Sama_0821	0.80	-0.1
1,005,030	+				+1.5
1,005,031	-				+0.1
1,005,031	-				+1.1
1,005,031	-				-0.3
1,005,031	-				+1.0
1,005,031	-				-2.6
1,005,031	-				-2.0
1,005,038	+				-0.2
1,005,038	+				+0.3
1,005,038	+				+0.0
1,005,038	+				+0.5
1,005,038	+				+0.7
1,005,039	-				+0.8
1,005,039	-				+0.1
1,005,040	+				+1.4
1,005,040	+				+1.0
1,005,041	-				-0.1
1,005,041	-				+0.2
1,005,041	-				+1.3
1,005,041	-				-1.6
1,005,125	+				-0.2
1,005,141	+				-1.8
1,005,142	-				+0.9
1,005,142	-				+0.7
1,005,142	-				-0.3
1,005,142	-				-0.5
1,005,142	-				-0.3
1,005,142	-				+1.5
1,005,144	+				-0.6
1,005,144	+				+1.0
1,005,144	+				+1.0
1,005,144	+				+0.5
1,005,145	-				+0.2
1,005,182	+				+2.3
1,005,183	-				+0.4
1,005,183	-				+0.4
1,005,205	+				+1.5
1,005,205	+				+0.3
1,005,205	+				+0.2
1,005,205	+				+0.3
1,005,205	+				+0.7
1,005,206	-				+1.7
1,005,206	-				-1.7
1,005,206	-				+0.4
1,005,206	-				+0.4
1,005,206	-				-0.7
1,005,206	-				-0.7
1,005,273	+				+1.2
1,005,273	+				+0.8
1,005,273	+				-1.1
1,005,274	-				+0.5
1,005,357	+		Sama_0822	0.15	+0.2
1,005,358	-		Sama_0822	0.16	-1.7
1,005,358	-		Sama_0822	0.16	-0.3
1,005,374	+		Sama_0822	0.17	+0.4
1,005,375	-		Sama_0822	0.17	+1.3
1,005,375	-		Sama_0822	0.17	-0.0
1,005,381	-		Sama_0822	0.17	-0.2
1,005,381	-		Sama_0822	0.17	-0.3
1,005,555	+		Sama_0822	0.30	+2.6
1,005,555	+		Sama_0822	0.30	+0.7
1,005,575	+		Sama_0822	0.31	+0.8
1,005,575	+		Sama_0822	0.31	+0.9
1,005,576	-		Sama_0822	0.31	+0.6
1,005,618	+		Sama_0822	0.34	+0.2
1,005,627	+		Sama_0822	0.35	+1.8
1,005,627	+		Sama_0822	0.35	+1.7
1,005,627	+		Sama_0822	0.35	+1.5
1,005,627	+		Sama_0822	0.35	+1.4
1,005,627	+		Sama_0822	0.35	+0.9
1,005,627	+		Sama_0822	0.35	+0.4
1,005,627	+		Sama_0822	0.35	-0.4
1,005,627	+		Sama_0822	0.35	+2.1
1,005,627	+		Sama_0822	0.35	+1.4
1,005,627	+		Sama_0822	0.35	-0.4
1,005,628	-		Sama_0822	0.35	+0.3
1,005,628	-		Sama_0822	0.35	+1.3
1,005,628	-		Sama_0822	0.35	+0.2
1,005,628	-		Sama_0822	0.35	-0.8
1,005,628	-		Sama_0822	0.35	+1.0
1,005,771	-		Sama_0822	0.46	-2.3
1,005,771	-		Sama_0822	0.46	+0.8
1,005,785	+		Sama_0822	0.47	-1.4
1,005,786	-		Sama_0822	0.47	-0.8
1,005,786	-		Sama_0822	0.47	-0.5
1,005,885	+		Sama_0822	0.54	+0.2
1,005,984	+		Sama_0822	0.61	-0.7
1,006,086	+		Sama_0822	0.68	+0.3
1,006,087	-		Sama_0822	0.69	+0.0
1,006,148	+		Sama_0822	0.73	-1.3
1,006,148	+		Sama_0822	0.73	+0.5
1,006,227	+		Sama_0822	0.79	+1.3
1,006,228	-		Sama_0822	0.79	-0.7
1,006,228	-		Sama_0822	0.79	-1.8
1,006,232	+		Sama_0822	0.79	+0.7
1,006,232	+		Sama_0822	0.79	+0.6
1,006,232	+		Sama_0822	0.79	-0.1
1,006,232	+		Sama_0822	0.79	+1.2
1,006,232	+		Sama_0822	0.79	-0.1
1,006,232	+		Sama_0822	0.79	+0.2
1,006,233	-		Sama_0822	0.79	+0.5
1,006,233	-		Sama_0822	0.79	-0.2
1,006,233	-		Sama_0822	0.79	+0.4
1,006,281	+		Sama_0822	0.83	-1.1
1,006,282	-		Sama_0822	0.83	-0.6
1,006,290	-		Sama_0822	0.83	-0.7
1,006,290	-		Sama_0822	0.83	+0.4
1,006,290	-		Sama_0822	0.83	-1.4
1,006,305	-		Sama_0822	0.84	-2.0
1,006,305	-		Sama_0822	0.84	+0.7
1,006,305	-		Sama_0822	0.84	+0.5
1,006,317	+		Sama_0822	0.85	-0.3
1,006,317	+		Sama_0822	0.85	-1.0
1,006,317	+		Sama_0822	0.85	-0.8
1,006,317	+		Sama_0822	0.85	+0.3
1,006,318	-		Sama_0822	0.85	-3.0
1,006,411	+				-1.4
1,006,411	+				-0.6
1,006,431	-				+0.2
1,006,460	+				+0.2
1,006,461	-				-1.3
1,006,461	-				+1.3
1,006,461	-				+0.5
1,006,516	+				+0.3
1,006,516	+				-0.3
1,006,516	+				+0.7
1,006,516	+				-0.8
1,006,517	-				-0.1
1,006,517	-				+1.1
1,006,517	-				-0.4
1,006,517	-				+1.0
1,006,517	-				-2.3
1,006,517	-				+0.5
1,006,787	+				-1.0
1,006,840	+				+2.0
1,006,841	-				+0.4