Strain Fitness in Marinobacter adhaerens HP15 around HP15_666

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_664 and HP15_665 are separated by 51 nucleotidesHP15_665 and HP15_666 overlap by 1 nucleotidesHP15_666 and HP15_667 overlap by 25 nucleotidesHP15_667 and HP15_668 are separated by 1 nucleotidesHP15_668 and HP15_669 overlap by 1 nucleotides HP15_664: HP15_664 - GPW/gp25, at 685,549 to 685,887 _664 HP15_665: HP15_665 - phage-related baseplate assembly protein V, at 685,939 to 686,724 _665 HP15_666: HP15_666 - conserved hypothetical protein, at 686,724 to 687,284 _666 HP15_667: HP15_667 - prophage LambdaW5, minor tail protein Z-like protein, at 687,260 to 687,802 _667 HP15_668: HP15_668 - conserved hypothetical protein, at 687,804 to 688,115 _668 HP15_669: HP15_669 - protein containing Rho termination factor, N-terminal domain, at 688,115 to 688,414 _669 Position (kb) 686 687 688Strain fitness (log2 ratio) -2 -1 0 1at 685.735 kb on - strand, within HP15_664at 685.777 kb on - strand, within HP15_664at 685.889 kb on - strandat 686.031 kb on + strand, within HP15_665at 686.103 kb on - strand, within HP15_665at 686.174 kb on - strand, within HP15_665at 686.397 kb on + strand, within HP15_665at 686.428 kb on + strand, within HP15_665at 686.428 kb on + strand, within HP15_665at 686.428 kb on + strand, within HP15_665at 686.428 kb on + strand, within HP15_665at 686.428 kb on + strand, within HP15_665at 686.436 kb on - strand, within HP15_665at 686.436 kb on - strand, within HP15_665at 686.436 kb on - strand, within HP15_665at 686.436 kb on - strand, within HP15_665at 686.436 kb on - strand, within HP15_665at 686.456 kb on + strand, within HP15_665at 686.456 kb on + strand, within HP15_665at 686.459 kb on - strand, within HP15_665at 686.469 kb on + strand, within HP15_665at 686.492 kb on + strand, within HP15_665at 686.618 kb on + strand, within HP15_665at 686.709 kb on + strandat 686.741 kb on - strandat 686.766 kb on + strandat 686.777 kb on + strandat 686.787 kb on - strand, within HP15_666at 686.802 kb on - strand, within HP15_666at 686.809 kb on - strand, within HP15_666at 686.839 kb on + strand, within HP15_666at 686.872 kb on + strand, within HP15_666at 686.872 kb on + strand, within HP15_666at 686.880 kb on - strand, within HP15_666at 686.903 kb on - strand, within HP15_666at 686.912 kb on - strand, within HP15_666at 686.949 kb on - strand, within HP15_666at 687.036 kb on - strand, within HP15_666at 687.140 kb on + strand, within HP15_666at 687.213 kb on - strand, within HP15_666at 687.284 kb on + strandat 687.354 kb on + strand, within HP15_667at 687.354 kb on + strand, within HP15_667at 687.425 kb on + strand, within HP15_667at 687.425 kb on + strand, within HP15_667at 687.433 kb on + strand, within HP15_667at 687.433 kb on - strand, within HP15_667at 687.433 kb on - strand, within HP15_667at 687.455 kb on - strand, within HP15_667at 687.512 kb on - strand, within HP15_667at 687.519 kb on + strand, within HP15_667at 687.526 kb on + strand, within HP15_667at 687.529 kb on - strand, within HP15_667at 687.544 kb on + strand, within HP15_667at 687.552 kb on - strand, within HP15_667at 687.782 kb on - strandat 687.848 kb on + strand, within HP15_668at 687.867 kb on + strand, within HP15_668at 687.875 kb on - strand, within HP15_668at 687.997 kb on - strand, within HP15_668at 688.048 kb on + strand, within HP15_668at 688.057 kb on - strand, within HP15_668at 688.164 kb on - strand, within HP15_669at 688.196 kb on + strand, within HP15_669at 688.267 kb on - strand, within HP15_669at 688.278 kb on + strand, within HP15_669

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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685,735 - HP15_664 0.55 -1.3
685,777 - HP15_664 0.67 -0.8
685,889 - +0.8
686,031 + HP15_665 0.12 +0.4
686,103 - HP15_665 0.21 -0.4
686,174 - HP15_665 0.30 -1.7
686,397 + HP15_665 0.58 -1.0
686,428 + HP15_665 0.62 -0.0
686,428 + HP15_665 0.62 +1.1
686,428 + HP15_665 0.62 -0.4
686,428 + HP15_665 0.62 +0.4
686,428 + HP15_665 0.62 +0.7
686,436 - HP15_665 0.63 -0.7
686,436 - HP15_665 0.63 -0.5
686,436 - HP15_665 0.63 -2.3
686,436 - HP15_665 0.63 -2.3
686,436 - HP15_665 0.63 -0.1
686,456 + HP15_665 0.66 -0.9
686,456 + HP15_665 0.66 -1.1
686,459 - HP15_665 0.66 -0.2
686,469 + HP15_665 0.67 -1.9
686,492 + HP15_665 0.70 -0.5
686,618 + HP15_665 0.86 +0.5
686,709 + -0.2
686,741 - -1.7
686,766 + +0.9
686,777 + -0.7
686,787 - HP15_666 0.11 -2.3
686,802 - HP15_666 0.14 -1.5
686,809 - HP15_666 0.15 +0.5
686,839 + HP15_666 0.20 -0.7
686,872 + HP15_666 0.26 -1.7
686,872 + HP15_666 0.26 +0.2
686,880 - HP15_666 0.28 +1.1
686,903 - HP15_666 0.32 -0.9
686,912 - HP15_666 0.34 -0.2
686,949 - HP15_666 0.40 +0.0
687,036 - HP15_666 0.56 +0.9
687,140 + HP15_666 0.74 -0.5
687,213 - HP15_666 0.87 -2.7
687,284 + -0.5
687,354 + HP15_667 0.17 -0.3
687,354 + HP15_667 0.17 +0.1
687,425 + HP15_667 0.30 +1.3
687,425 + HP15_667 0.30 -1.3
687,433 + HP15_667 0.32 -1.0
687,433 - HP15_667 0.32 -0.1
687,433 - HP15_667 0.32 -2.6
687,455 - HP15_667 0.36 +0.5
687,512 - HP15_667 0.46 -2.3
687,519 + HP15_667 0.48 +0.2
687,526 + HP15_667 0.49 +0.4
687,529 - HP15_667 0.50 -0.6
687,544 + HP15_667 0.52 -2.1
687,552 - HP15_667 0.54 -1.0
687,782 - -0.1
687,848 + HP15_668 0.14 +0.4
687,867 + HP15_668 0.20 +0.9
687,875 - HP15_668 0.23 -1.2
687,997 - HP15_668 0.62 -1.6
688,048 + HP15_668 0.78 -0.7
688,057 - HP15_668 0.81 -0.7
688,164 - HP15_669 0.16 +0.1
688,196 + HP15_669 0.27 -0.3
688,267 - HP15_669 0.51 -0.8
688,278 + HP15_669 0.54 -0.6

Or see this region's nucleotide sequence