Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_550 and HP15_551 overlap by 1 nucleotides HP15_551 and HP15_553 are separated by 24 nucleotides HP15_553 and HP15_552 are separated by 0 nucleotides HP15_552 and HP15_554 are separated by 135 nucleotides
HP15_550: HP15_550 - phosphoheptose isomerase, at 570,444 to 571,046
_550
HP15_551: HP15_551 - hypothetical protein, at 571,046 to 571,411
_551
HP15_553: HP15_553 - LppC family lipoprotein, at 571,436 to 573,097
_553
HP15_552: HP15_552 - hypothetical protein, at 573,098 to 573,304
_552
HP15_554: HP15_554 - tetrapyrrole methylase family protein, at 573,440 to 574,336
_554
Position (kb) 571
572
573
574 Strain fitness (log2 ratio) -2
-1
0
1
2 at 570.490 kb on - strand at 570.508 kb on + strand, within HP15_550 at 570.508 kb on + strand, within HP15_550 at 570.516 kb on - strand, within HP15_550 at 570.701 kb on - strand, within HP15_550 at 570.725 kb on - strand, within HP15_550 at 570.806 kb on + strand, within HP15_550 at 571.123 kb on - strand, within HP15_551 at 571.262 kb on + strand, within HP15_551 at 571.338 kb on - strand, within HP15_551 at 571.358 kb on + strand, within HP15_551 at 571.376 kb on - strand at 571.470 kb on + strand at 571.478 kb on - strand at 571.510 kb on + strand at 573.394 kb on + strand at 573.416 kb on - strand at 573.430 kb on + strand at 573.438 kb on - strand at 573.544 kb on + strand, within HP15_554 at 573.557 kb on + strand, within HP15_554 at 573.662 kb on - strand, within HP15_554 at 573.694 kb on - strand, within HP15_554 at 573.703 kb on + strand, within HP15_554 at 573.703 kb on + strand, within HP15_554 at 573.703 kb on + strand, within HP15_554 at 573.703 kb on + strand, within HP15_554 at 573.711 kb on - strand, within HP15_554 at 573.711 kb on - strand, within HP15_554 at 573.711 kb on - strand, within HP15_554 at 573.787 kb on + strand, within HP15_554 at 573.792 kb on + strand, within HP15_554 at 573.801 kb on + strand, within HP15_554 at 573.828 kb on + strand, within HP15_554 at 573.834 kb on - strand, within HP15_554 at 573.838 kb on + strand, within HP15_554 at 573.935 kb on - strand, within HP15_554 at 574.016 kb on - strand, within HP15_554 at 574.048 kb on - strand, within HP15_554 at 574.082 kb on - strand, within HP15_554
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 570,490 - +0.1 570,508 + HP15_550 0.11 -0.1 570,508 + HP15_550 0.11 +1.0 570,516 - HP15_550 0.12 +0.4 570,701 - HP15_550 0.43 +1.5 570,725 - HP15_550 0.47 +0.1 570,806 + HP15_550 0.60 +0.1 571,123 - HP15_551 0.21 +0.6 571,262 + HP15_551 0.59 -0.0 571,338 - HP15_551 0.80 -0.4 571,358 + HP15_551 0.85 +1.3 571,376 - -0.8 571,470 + -0.3 571,478 - -1.3 571,510 + +0.6 573,394 + +0.9 573,416 - +0.5 573,430 + +0.1 573,438 - +0.1 573,544 + HP15_554 0.12 -0.1 573,557 + HP15_554 0.13 +0.0 573,662 - HP15_554 0.25 +2.1 573,694 - HP15_554 0.28 -1.0 573,703 + HP15_554 0.29 +0.1 573,703 + HP15_554 0.29 +1.9 573,703 + HP15_554 0.29 -1.1 573,703 + HP15_554 0.29 +0.7 573,711 - HP15_554 0.30 -1.1 573,711 - HP15_554 0.30 +0.6 573,711 - HP15_554 0.30 -1.8 573,787 + HP15_554 0.39 -2.0 573,792 + HP15_554 0.39 -0.6 573,801 + HP15_554 0.40 +0.5 573,828 + HP15_554 0.43 -0.2 573,834 - HP15_554 0.44 +0.2 573,838 + HP15_554 0.44 +0.7 573,935 - HP15_554 0.55 -1.0 574,016 - HP15_554 0.64 -0.3 574,048 - HP15_554 0.68 +1.3 574,082 - HP15_554 0.72 +0.3
Or see this region's nucleotide sequence