Experiment: L-Proline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0470 and Psest_0471 are separated by 34 nucleotides Psest_0471 and Psest_0472 are separated by 85 nucleotides Psest_0472 and Psest_0473 overlap by 4 nucleotides
Psest_0470: Psest_0470 - rfaE bifunctional protein, domain I/rfaE bifunctional protein, domain II, at 518,528 to 519,949
_0470
Psest_0471: Psest_0471 - hypothetical protein, at 519,984 to 520,871
_0471
Psest_0472: Psest_0472 - Predicted oxidoreductases (related to aryl-alcohol dehydrogenases), at 520,957 to 521,766
_0472
Psest_0473: Psest_0473 - Glycerol-3-phosphate dehydrogenase, at 521,763 to 522,938
_0473
Position (kb) 519
520
521 Strain fitness (log2 ratio) -2
-1
0
1
2 at 520.100 kb on + strand, within Psest_0471 at 520.128 kb on + strand, within Psest_0471 at 520.129 kb on - strand, within Psest_0471 at 520.129 kb on - strand, within Psest_0471 at 520.129 kb on - strand, within Psest_0471 at 520.178 kb on - strand, within Psest_0471 at 520.178 kb on - strand, within Psest_0471 at 520.178 kb on - strand, within Psest_0471 at 520.178 kb on - strand, within Psest_0471 at 520.284 kb on - strand, within Psest_0471 at 520.294 kb on + strand, within Psest_0471 at 520.295 kb on - strand, within Psest_0471 at 520.330 kb on + strand, within Psest_0471 at 520.330 kb on + strand, within Psest_0471 at 520.331 kb on - strand, within Psest_0471 at 520.331 kb on - strand, within Psest_0471 at 520.572 kb on - strand, within Psest_0471 at 520.573 kb on + strand, within Psest_0471 at 520.573 kb on + strand, within Psest_0471 at 520.574 kb on - strand, within Psest_0471 at 520.574 kb on - strand, within Psest_0471 at 520.786 kb on + strand at 520.787 kb on - strand at 520.787 kb on - strand at 520.816 kb on + strand at 520.816 kb on + strand at 520.817 kb on - strand at 520.817 kb on - strand at 520.817 kb on - strand at 520.854 kb on + strand at 520.855 kb on - strand at 520.866 kb on - strand at 520.866 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (N) remove 520,100 + Psest_0471 0.13 +1.9 520,128 + Psest_0471 0.16 -0.3 520,129 - Psest_0471 0.16 +0.1 520,129 - Psest_0471 0.16 +0.0 520,129 - Psest_0471 0.16 -0.3 520,178 - Psest_0471 0.22 +0.3 520,178 - Psest_0471 0.22 -0.3 520,178 - Psest_0471 0.22 +0.4 520,178 - Psest_0471 0.22 +0.2 520,284 - Psest_0471 0.34 -0.1 520,294 + Psest_0471 0.35 -0.2 520,295 - Psest_0471 0.35 -2.1 520,330 + Psest_0471 0.39 +0.2 520,330 + Psest_0471 0.39 +0.8 520,331 - Psest_0471 0.39 -0.0 520,331 - Psest_0471 0.39 -0.0 520,572 - Psest_0471 0.66 -1.9 520,573 + Psest_0471 0.66 -0.4 520,573 + Psest_0471 0.66 +0.5 520,574 - Psest_0471 0.66 -0.3 520,574 - Psest_0471 0.66 +0.2 520,786 + +0.6 520,787 - +0.1 520,787 - +0.8 520,816 + -0.0 520,816 + +0.7 520,817 - -0.7 520,817 - +1.0 520,817 - +0.5 520,854 + -0.6 520,855 - +0.2 520,866 - -0.0 520,866 - -0.2
Or see this region's nucleotide sequence