Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_280 and HP15_281 are separated by 89 nucleotides HP15_281 and HP15_282 are separated by 6 nucleotides HP15_282 and HP15_283 are separated by 2 nucleotides
HP15_280: HP15_280 - putative oxygen-independent coproporphyrinogen III oxidase, at 271,304 to 272,386
_280
HP15_281: HP15_281 - non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family, at 272,476 to 273,075
_281
HP15_282: HP15_282 - conserved hypothetical protein, secreted, at 273,082 to 273,537
_282
HP15_283: HP15_283 - methionine biosynthesis protein MetW, at 273,540 to 274,139
_283
Position (kb) 272
273
274 Strain fitness (log2 ratio) -2
-1
0
1
2 at 271.536 kb on - strand, within HP15_280 at 271.536 kb on - strand, within HP15_280 at 271.830 kb on + strand, within HP15_280 at 271.880 kb on + strand, within HP15_280 at 271.880 kb on + strand, within HP15_280 at 271.880 kb on + strand, within HP15_280 at 271.880 kb on + strand, within HP15_280 at 271.880 kb on - strand, within HP15_280 at 271.880 kb on - strand, within HP15_280 at 271.898 kb on - strand, within HP15_280 at 272.062 kb on - strand, within HP15_280 at 272.168 kb on + strand, within HP15_280 at 272.233 kb on - strand, within HP15_280 at 272.395 kb on - strand at 272.396 kb on - strand at 272.479 kb on + strand at 272.486 kb on + strand at 272.636 kb on - strand, within HP15_281 at 272.636 kb on - strand, within HP15_281 at 272.654 kb on - strand, within HP15_281 at 272.716 kb on + strand, within HP15_281 at 272.790 kb on - strand, within HP15_281 at 273.079 kb on + strand at 273.087 kb on - strand at 273.104 kb on - strand at 273.105 kb on - strand at 273.134 kb on - strand, within HP15_282 at 273.282 kb on - strand, within HP15_282 at 273.350 kb on + strand, within HP15_282 at 273.354 kb on - strand, within HP15_282 at 273.379 kb on - strand, within HP15_282 at 273.404 kb on + strand, within HP15_282 at 273.409 kb on + strand, within HP15_282 at 273.417 kb on - strand, within HP15_282 at 273.417 kb on - strand, within HP15_282 at 273.417 kb on - strand, within HP15_282 at 273.419 kb on + strand, within HP15_282 at 273.419 kb on + strand, within HP15_282 at 273.422 kb on - strand, within HP15_282 at 273.428 kb on + strand, within HP15_282 at 273.434 kb on - strand, within HP15_282 at 273.436 kb on - strand, within HP15_282 at 273.483 kb on - strand, within HP15_282 at 273.701 kb on + strand, within HP15_283 at 273.709 kb on - strand, within HP15_283 at 273.709 kb on - strand, within HP15_283 at 273.854 kb on - strand, within HP15_283 at 273.917 kb on + strand, within HP15_283 at 273.932 kb on + strand, within HP15_283 at 273.932 kb on + strand, within HP15_283
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 271,536 - HP15_280 0.21 -0.0 271,536 - HP15_280 0.21 +1.0 271,830 + HP15_280 0.49 -0.5 271,880 + HP15_280 0.53 -0.2 271,880 + HP15_280 0.53 +1.0 271,880 + HP15_280 0.53 +0.8 271,880 + HP15_280 0.53 -0.4 271,880 - HP15_280 0.53 +0.1 271,880 - HP15_280 0.53 -0.6 271,898 - HP15_280 0.55 -0.7 272,062 - HP15_280 0.70 -0.1 272,168 + HP15_280 0.80 +0.3 272,233 - HP15_280 0.86 -0.0 272,395 - +1.0 272,396 - +0.0 272,479 + +0.4 272,486 + +0.5 272,636 - HP15_281 0.27 +1.8 272,636 - HP15_281 0.27 +0.5 272,654 - HP15_281 0.30 +0.6 272,716 + HP15_281 0.40 +0.8 272,790 - HP15_281 0.52 +1.0 273,079 + +0.2 273,087 - +0.4 273,104 - -0.4 273,105 - +0.6 273,134 - HP15_282 0.11 +0.5 273,282 - HP15_282 0.44 -0.1 273,350 + HP15_282 0.59 -0.0 273,354 - HP15_282 0.60 +1.0 273,379 - HP15_282 0.65 -0.5 273,404 + HP15_282 0.71 -2.0 273,409 + HP15_282 0.72 -0.4 273,417 - HP15_282 0.73 -0.7 273,417 - HP15_282 0.73 +0.1 273,417 - HP15_282 0.73 +0.1 273,419 + HP15_282 0.74 -0.3 273,419 + HP15_282 0.74 +1.4 273,422 - HP15_282 0.75 +0.5 273,428 + HP15_282 0.76 +1.2 273,434 - HP15_282 0.77 +1.5 273,436 - HP15_282 0.78 -0.4 273,483 - HP15_282 0.88 +0.4 273,701 + HP15_283 0.27 -0.0 273,709 - HP15_283 0.28 -1.6 273,709 - HP15_283 0.28 -0.2 273,854 - HP15_283 0.52 +0.1 273,917 + HP15_283 0.63 -0.0 273,932 + HP15_283 0.65 +0.2 273,932 + HP15_283 0.65 +0.3
Or see this region's nucleotide sequence