Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2693 and HP15_2694 overlap by 4 nucleotides HP15_2694 and HP15_2695 overlap by 4 nucleotides
HP15_2693: HP15_2693 - 3-hydroxyacyl-CoA dehydrogenase PaaC (EC 1.1.1.-) (from data) , at 2,845,117 to 2,846,637
_2693
HP15_2694: HP15_2694 - phenylacetic acid degradation protein PaaD, at 2,846,634 to 2,847,080
_2694
HP15_2695: HP15_2695 - Beta-ketoadipyl CoA thiolase (EC 2.3.1.-) (from data) , at 2,847,077 to 2,848,324
_2695
Position (kb)
2846
2847
2848 Strain fitness (log2 ratio)
-2
-1
0
1 at 2845.693 kb on - strand, within HP15_2693 at 2845.746 kb on - strand, within HP15_2693 at 2845.792 kb on + strand, within HP15_2693 at 2845.863 kb on - strand, within HP15_2693 at 2845.882 kb on + strand, within HP15_2693 at 2845.973 kb on - strand, within HP15_2693 at 2846.001 kb on + strand, within HP15_2693 at 2846.009 kb on - strand, within HP15_2693 at 2846.032 kb on - strand, within HP15_2693 at 2846.057 kb on + strand, within HP15_2693 at 2846.088 kb on + strand, within HP15_2693 at 2846.134 kb on - strand, within HP15_2693 at 2846.425 kb on + strand, within HP15_2693 at 2846.481 kb on - strand, within HP15_2693 at 2846.481 kb on - strand, within HP15_2693 at 2846.483 kb on + strand, within HP15_2693 at 2846.494 kb on + strand at 2846.582 kb on + strand at 2846.678 kb on + strand at 2846.712 kb on + strand, within HP15_2694 at 2846.741 kb on + strand, within HP15_2694 at 2846.741 kb on + strand, within HP15_2694 at 2846.805 kb on + strand, within HP15_2694 at 2846.814 kb on - strand, within HP15_2694 at 2846.890 kb on + strand, within HP15_2694 at 2846.988 kb on - strand, within HP15_2694 at 2847.010 kb on + strand, within HP15_2694 at 2847.018 kb on - strand, within HP15_2694 at 2847.028 kb on - strand, within HP15_2694 at 2847.034 kb on + strand, within HP15_2694 at 2847.140 kb on - strand at 2847.154 kb on + strand at 2847.221 kb on + strand, within HP15_2695 at 2847.229 kb on - strand, within HP15_2695 at 2847.259 kb on - strand, within HP15_2695 at 2847.269 kb on - strand, within HP15_2695 at 2847.422 kb on + strand, within HP15_2695 at 2847.457 kb on - strand, within HP15_2695 at 2847.642 kb on + strand, within HP15_2695 at 2847.662 kb on - strand, within HP15_2695 at 2847.900 kb on + strand, within HP15_2695 at 2847.908 kb on - strand, within HP15_2695 at 2847.978 kb on - strand, within HP15_2695 at 2848.073 kb on + strand, within HP15_2695 at 2848.078 kb on + strand, within HP15_2695
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 2,845,693 - HP15_2693 0.38 -0.4 2,845,746 - HP15_2693 0.41 +0.5 2,845,792 + HP15_2693 0.44 -0.4 2,845,863 - HP15_2693 0.49 -0.7 2,845,882 + HP15_2693 0.50 -1.7 2,845,973 - HP15_2693 0.56 +0.0 2,846,001 + HP15_2693 0.58 +0.7 2,846,009 - HP15_2693 0.59 -2.0 2,846,032 - HP15_2693 0.60 +1.6 2,846,057 + HP15_2693 0.62 +0.1 2,846,088 + HP15_2693 0.64 -0.6 2,846,134 - HP15_2693 0.67 +0.8 2,846,425 + HP15_2693 0.86 -0.3 2,846,481 - HP15_2693 0.90 -0.7 2,846,481 - HP15_2693 0.90 +0.3 2,846,483 + HP15_2693 0.90 -1.1 2,846,494 + +0.8 2,846,582 + +0.4 2,846,678 + +0.3 2,846,712 + HP15_2694 0.17 -2.2 2,846,741 + HP15_2694 0.24 -1.1 2,846,741 + HP15_2694 0.24 +0.1 2,846,805 + HP15_2694 0.38 -0.1 2,846,814 - HP15_2694 0.40 -0.2 2,846,890 + HP15_2694 0.57 -0.3 2,846,988 - HP15_2694 0.79 -0.8 2,847,010 + HP15_2694 0.84 -1.1 2,847,018 - HP15_2694 0.86 -1.0 2,847,028 - HP15_2694 0.88 +0.4 2,847,034 + HP15_2694 0.89 +0.2 2,847,140 - +0.4 2,847,154 + +1.1 2,847,221 + HP15_2695 0.12 +0.8 2,847,229 - HP15_2695 0.12 -0.0 2,847,259 - HP15_2695 0.15 +0.8 2,847,269 - HP15_2695 0.15 -0.2 2,847,422 + HP15_2695 0.28 -0.5 2,847,457 - HP15_2695 0.30 -0.6 2,847,642 + HP15_2695 0.45 -1.4 2,847,662 - HP15_2695 0.47 -0.0 2,847,900 + HP15_2695 0.66 +0.5 2,847,908 - HP15_2695 0.67 +0.0 2,847,978 - HP15_2695 0.72 -0.3 2,848,073 + HP15_2695 0.80 -1.0 2,848,078 + HP15_2695 0.80 -1.4
Or see this region's nucleotide sequence