Strain Fitness in Marinobacter adhaerens HP15 around HP15_2622

Experiment: marine broth

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_2620 and HP15_2621 are separated by 88 nucleotidesHP15_2621 and HP15_2622 overlap by 11 nucleotidesHP15_2622 and HP15_2623 are separated by 353 nucleotides HP15_2620: HP15_2620 - conserved hypothetical protein, at 2,771,263 to 2,772,579 _2620 HP15_2621: HP15_2621 - branched-chain amino acid transport, at 2,772,668 to 2,772,979 _2621 HP15_2622: HP15_2622 - AzlC family protein, at 2,772,969 to 2,773,715 _2622 HP15_2623: HP15_2623 - leucine dehydrogenase, at 2,774,069 to 2,775,184 _2623 Position (kb) 2772 2773 2774Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2772.018 kb on - strand, within HP15_2620at 2772.240 kb on - strand, within HP15_2620at 2772.254 kb on + strand, within HP15_2620at 2772.340 kb on + strand, within HP15_2620at 2772.340 kb on + strand, within HP15_2620at 2772.525 kb on - strandat 2772.525 kb on - strandat 2772.534 kb on + strandat 2772.539 kb on + strandat 2772.581 kb on + strandat 2772.615 kb on - strandat 2772.726 kb on + strand, within HP15_2621at 2772.831 kb on - strand, within HP15_2621at 2772.836 kb on - strand, within HP15_2621at 2772.947 kb on - strand, within HP15_2621at 2772.990 kb on - strandat 2773.105 kb on + strand, within HP15_2622at 2773.113 kb on - strand, within HP15_2622at 2773.188 kb on + strand, within HP15_2622at 2773.188 kb on + strand, within HP15_2622at 2773.249 kb on + strand, within HP15_2622at 2773.256 kb on - strand, within HP15_2622at 2773.266 kb on - strand, within HP15_2622at 2773.392 kb on - strand, within HP15_2622at 2773.425 kb on - strand, within HP15_2622at 2773.517 kb on - strand, within HP15_2622at 2773.555 kb on - strand, within HP15_2622at 2773.555 kb on - strand, within HP15_2622at 2773.557 kb on + strand, within HP15_2622at 2773.577 kb on + strand, within HP15_2622at 2773.577 kb on + strand, within HP15_2622at 2773.879 kb on - strandat 2773.975 kb on + strandat 2774.006 kb on - strandat 2774.025 kb on - strandat 2774.184 kb on - strand, within HP15_2623at 2774.255 kb on + strand, within HP15_2623at 2774.263 kb on - strand, within HP15_2623at 2774.301 kb on + strand, within HP15_2623at 2774.376 kb on - strand, within HP15_2623at 2774.567 kb on - strand, within HP15_2623at 2774.615 kb on + strand, within HP15_2623at 2774.671 kb on + strand, within HP15_2623at 2774.671 kb on + strand, within HP15_2623at 2774.672 kb on - strand, within HP15_2623at 2774.677 kb on - strand, within HP15_2623at 2774.677 kb on - strand, within HP15_2623

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
remove
2,772,018 - HP15_2620 0.57 -1.2
2,772,240 - HP15_2620 0.74 +0.8
2,772,254 + HP15_2620 0.75 +0.1
2,772,340 + HP15_2620 0.82 +1.3
2,772,340 + HP15_2620 0.82 +0.7
2,772,525 - +3.0
2,772,525 - +1.7
2,772,534 + -1.6
2,772,539 + -0.8
2,772,581 + +1.3
2,772,615 - -2.7
2,772,726 + HP15_2621 0.19 +0.1
2,772,831 - HP15_2621 0.52 +0.9
2,772,836 - HP15_2621 0.54 +0.6
2,772,947 - HP15_2621 0.89 +0.8
2,772,990 - -0.1
2,773,105 + HP15_2622 0.18 +0.3
2,773,113 - HP15_2622 0.19 +0.1
2,773,188 + HP15_2622 0.29 +0.3
2,773,188 + HP15_2622 0.29 -1.5
2,773,249 + HP15_2622 0.37 -0.8
2,773,256 - HP15_2622 0.38 -0.1
2,773,266 - HP15_2622 0.40 -1.1
2,773,392 - HP15_2622 0.57 -0.2
2,773,425 - HP15_2622 0.61 -1.2
2,773,517 - HP15_2622 0.73 +0.4
2,773,555 - HP15_2622 0.78 -1.0
2,773,555 - HP15_2622 0.78 -1.0
2,773,557 + HP15_2622 0.79 -1.1
2,773,577 + HP15_2622 0.81 +2.0
2,773,577 + HP15_2622 0.81 -0.2
2,773,879 - -0.2
2,773,975 + -0.5
2,774,006 - -0.7
2,774,025 - +0.1
2,774,184 - HP15_2623 0.10 -2.2
2,774,255 + HP15_2623 0.17 -1.5
2,774,263 - HP15_2623 0.17 -0.8
2,774,301 + HP15_2623 0.21 -0.0
2,774,376 - HP15_2623 0.28 -0.6
2,774,567 - HP15_2623 0.45 +1.2
2,774,615 + HP15_2623 0.49 +0.4
2,774,671 + HP15_2623 0.54 -0.1
2,774,671 + HP15_2623 0.54 -0.2
2,774,672 - HP15_2623 0.54 +0.9
2,774,677 - HP15_2623 0.54 -0.9
2,774,677 - HP15_2623 0.54 -2.4

Or see this region's nucleotide sequence