Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2620 and HP15_2621 are separated by 88 nucleotides HP15_2621 and HP15_2622 overlap by 11 nucleotides HP15_2622 and HP15_2623 are separated by 353 nucleotides
HP15_2620: HP15_2620 - conserved hypothetical protein, at 2,771,263 to 2,772,579
_2620
HP15_2621: HP15_2621 - branched-chain amino acid transport, at 2,772,668 to 2,772,979
_2621
HP15_2622: HP15_2622 - AzlC family protein, at 2,772,969 to 2,773,715
_2622
HP15_2623: HP15_2623 - leucine dehydrogenase, at 2,774,069 to 2,775,184
_2623
Position (kb)
2772
2773
2774 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2772.018 kb on - strand, within HP15_2620 at 2772.240 kb on - strand, within HP15_2620 at 2772.254 kb on + strand, within HP15_2620 at 2772.340 kb on + strand, within HP15_2620 at 2772.340 kb on + strand, within HP15_2620 at 2772.525 kb on - strand at 2772.525 kb on - strand at 2772.534 kb on + strand at 2772.539 kb on + strand at 2772.581 kb on + strand at 2772.615 kb on - strand at 2772.726 kb on + strand, within HP15_2621 at 2772.831 kb on - strand, within HP15_2621 at 2772.836 kb on - strand, within HP15_2621 at 2772.947 kb on - strand, within HP15_2621 at 2772.990 kb on - strand at 2773.105 kb on + strand, within HP15_2622 at 2773.113 kb on - strand, within HP15_2622 at 2773.188 kb on + strand, within HP15_2622 at 2773.188 kb on + strand, within HP15_2622 at 2773.249 kb on + strand, within HP15_2622 at 2773.256 kb on - strand, within HP15_2622 at 2773.266 kb on - strand, within HP15_2622 at 2773.392 kb on - strand, within HP15_2622 at 2773.425 kb on - strand, within HP15_2622 at 2773.517 kb on - strand, within HP15_2622 at 2773.555 kb on - strand, within HP15_2622 at 2773.555 kb on - strand, within HP15_2622 at 2773.557 kb on + strand, within HP15_2622 at 2773.577 kb on + strand, within HP15_2622 at 2773.577 kb on + strand, within HP15_2622 at 2773.879 kb on - strand at 2773.975 kb on + strand at 2774.006 kb on - strand at 2774.025 kb on - strand at 2774.184 kb on - strand, within HP15_2623 at 2774.255 kb on + strand, within HP15_2623 at 2774.263 kb on - strand, within HP15_2623 at 2774.301 kb on + strand, within HP15_2623 at 2774.376 kb on - strand, within HP15_2623 at 2774.567 kb on - strand, within HP15_2623 at 2774.615 kb on + strand, within HP15_2623 at 2774.671 kb on + strand, within HP15_2623 at 2774.671 kb on + strand, within HP15_2623 at 2774.672 kb on - strand, within HP15_2623 at 2774.677 kb on - strand, within HP15_2623 at 2774.677 kb on - strand, within HP15_2623
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 2,772,018 - HP15_2620 0.57 -1.2 2,772,240 - HP15_2620 0.74 +0.8 2,772,254 + HP15_2620 0.75 +0.1 2,772,340 + HP15_2620 0.82 +1.3 2,772,340 + HP15_2620 0.82 +0.7 2,772,525 - +3.0 2,772,525 - +1.7 2,772,534 + -1.6 2,772,539 + -0.8 2,772,581 + +1.3 2,772,615 - -2.7 2,772,726 + HP15_2621 0.19 +0.1 2,772,831 - HP15_2621 0.52 +0.9 2,772,836 - HP15_2621 0.54 +0.6 2,772,947 - HP15_2621 0.89 +0.8 2,772,990 - -0.1 2,773,105 + HP15_2622 0.18 +0.3 2,773,113 - HP15_2622 0.19 +0.1 2,773,188 + HP15_2622 0.29 +0.3 2,773,188 + HP15_2622 0.29 -1.5 2,773,249 + HP15_2622 0.37 -0.8 2,773,256 - HP15_2622 0.38 -0.1 2,773,266 - HP15_2622 0.40 -1.1 2,773,392 - HP15_2622 0.57 -0.2 2,773,425 - HP15_2622 0.61 -1.2 2,773,517 - HP15_2622 0.73 +0.4 2,773,555 - HP15_2622 0.78 -1.0 2,773,555 - HP15_2622 0.78 -1.0 2,773,557 + HP15_2622 0.79 -1.1 2,773,577 + HP15_2622 0.81 +2.0 2,773,577 + HP15_2622 0.81 -0.2 2,773,879 - -0.2 2,773,975 + -0.5 2,774,006 - -0.7 2,774,025 - +0.1 2,774,184 - HP15_2623 0.10 -2.2 2,774,255 + HP15_2623 0.17 -1.5 2,774,263 - HP15_2623 0.17 -0.8 2,774,301 + HP15_2623 0.21 -0.0 2,774,376 - HP15_2623 0.28 -0.6 2,774,567 - HP15_2623 0.45 +1.2 2,774,615 + HP15_2623 0.49 +0.4 2,774,671 + HP15_2623 0.54 -0.1 2,774,671 + HP15_2623 0.54 -0.2 2,774,672 - HP15_2623 0.54 +0.9 2,774,677 - HP15_2623 0.54 -0.9 2,774,677 - HP15_2623 0.54 -2.4
Or see this region's nucleotide sequence