Strain Fitness in Marinobacter adhaerens HP15 around HP15_2618

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2616 and HP15_2617 are separated by 72 nucleotidesHP15_2617 and HP15_2618 are separated by 61 nucleotidesHP15_2618 and HP15_2619 are separated by 207 nucleotides HP15_2616: HP15_2616 - protein containing DUF482, at 2,768,001 to 2,769,227 _2616 HP15_2617: HP15_2617 - conserved hypothetical protein, secreted, at 2,769,300 to 2,769,890 _2617 HP15_2618: HP15_2618 - dodecin flavoprotein, at 2,769,952 to 2,770,152 _2618 HP15_2619: HP15_2619 - conserved hypothetical protein, secreted, at 2,770,360 to 2,771,129 _2619 Position (kb) 2769 2770 2771Strain fitness (log2 ratio) -2 -1 0 1at 2769.042 kb on + strand, within HP15_2616at 2769.092 kb on + strand, within HP15_2616at 2769.154 kb on + strandat 2769.228 kb on + strandat 2769.351 kb on - strandat 2769.351 kb on - strandat 2769.387 kb on + strand, within HP15_2617at 2769.405 kb on - strand, within HP15_2617at 2769.649 kb on + strand, within HP15_2617at 2769.707 kb on + strand, within HP15_2617at 2769.795 kb on - strand, within HP15_2617at 2770.086 kb on - strand, within HP15_2618at 2770.088 kb on - strand, within HP15_2618at 2770.280 kb on + strandat 2770.459 kb on + strand, within HP15_2619at 2770.563 kb on - strand, within HP15_2619at 2770.590 kb on - strand, within HP15_2619at 2770.710 kb on - strand, within HP15_2619at 2770.710 kb on - strand, within HP15_2619at 2770.710 kb on - strand, within HP15_2619at 2770.834 kb on - strand, within HP15_2619at 2770.879 kb on - strand, within HP15_2619at 2770.904 kb on + strand, within HP15_2619at 2770.943 kb on - strand, within HP15_2619at 2771.028 kb on - strand, within HP15_2619at 2771.046 kb on - strand, within HP15_2619

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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2,769,042 + HP15_2616 0.85 +0.9
2,769,092 + HP15_2616 0.89 -0.4
2,769,154 + -0.1
2,769,228 + +0.4
2,769,351 - -1.0
2,769,351 - -0.4
2,769,387 + HP15_2617 0.15 -1.5
2,769,405 - HP15_2617 0.18 -2.6
2,769,649 + HP15_2617 0.59 +0.2
2,769,707 + HP15_2617 0.69 -0.3
2,769,795 - HP15_2617 0.84 -0.1
2,770,086 - HP15_2618 0.67 -0.7
2,770,088 - HP15_2618 0.68 -1.3
2,770,280 + +1.3
2,770,459 + HP15_2619 0.13 -1.3
2,770,563 - HP15_2619 0.26 +0.1
2,770,590 - HP15_2619 0.30 -0.8
2,770,710 - HP15_2619 0.45 -0.2
2,770,710 - HP15_2619 0.45 +0.0
2,770,710 - HP15_2619 0.45 +0.9
2,770,834 - HP15_2619 0.62 +0.2
2,770,879 - HP15_2619 0.67 +0.6
2,770,904 + HP15_2619 0.71 +0.9
2,770,943 - HP15_2619 0.76 -0.2
2,771,028 - HP15_2619 0.87 -0.9
2,771,046 - HP15_2619 0.89 +0.9

Or see this region's nucleotide sequence