Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_253 and HP15_254 are separated by 12 nucleotides HP15_254 and HP15_255 are separated by 260 nucleotides HP15_255 and HP15_256 are separated by 7 nucleotides
HP15_253: HP15_253 - extracellular solute-binding protein, family 3, at 241,441 to 244,149
_253
HP15_254: HP15_254 - conserved hypothetical protein, at 244,162 to 244,485
_254
HP15_255: HP15_255 - conserved hypothetical protein, at 244,746 to 245,351
_255
HP15_256: HP15_256 - serine protease, at 245,359 to 247,575
_256
Position (kb) 244
245
246 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 243.810 kb on + strand, within HP15_253 at 243.813 kb on - strand, within HP15_253 at 243.823 kb on - strand, within HP15_253 at 243.956 kb on + strand at 243.956 kb on - strand at 244.040 kb on + strand at 244.110 kb on + strand at 244.111 kb on + strand at 244.111 kb on + strand at 244.111 kb on + strand at 244.199 kb on + strand, within HP15_254 at 244.230 kb on - strand, within HP15_254 at 244.270 kb on - strand, within HP15_254 at 244.286 kb on + strand, within HP15_254 at 244.286 kb on + strand, within HP15_254 at 244.293 kb on - strand, within HP15_254 at 244.294 kb on - strand, within HP15_254 at 244.296 kb on + strand, within HP15_254 at 244.366 kb on + strand, within HP15_254 at 244.403 kb on + strand, within HP15_254 at 244.715 kb on - strand at 244.779 kb on + strand at 244.823 kb on + strand, within HP15_255 at 244.823 kb on + strand, within HP15_255 at 244.831 kb on - strand, within HP15_255 at 245.030 kb on - strand, within HP15_255 at 245.030 kb on - strand, within HP15_255 at 245.162 kb on - strand, within HP15_255 at 245.176 kb on + strand, within HP15_255 at 245.184 kb on - strand, within HP15_255 at 245.224 kb on + strand, within HP15_255 at 245.232 kb on - strand, within HP15_255 at 245.233 kb on + strand, within HP15_255 at 245.247 kb on - strand, within HP15_255 at 245.313 kb on - strand at 245.367 kb on + strand at 245.398 kb on - strand at 245.398 kb on - strand at 245.433 kb on + strand at 245.448 kb on - strand at 245.459 kb on - strand at 245.459 kb on - strand at 245.470 kb on - strand at 245.490 kb on + strand at 245.600 kb on - strand, within HP15_256 at 245.825 kb on - strand, within HP15_256 at 245.833 kb on + strand, within HP15_256 at 245.923 kb on - strand, within HP15_256 at 246.207 kb on - strand, within HP15_256 at 246.223 kb on + strand, within HP15_256 at 246.230 kb on - strand, within HP15_256 at 246.231 kb on - strand, within HP15_256 at 246.306 kb on - strand, within HP15_256 at 246.338 kb on - strand, within HP15_256
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 243,810 + HP15_253 0.87 -0.0 243,813 - HP15_253 0.88 -2.5 243,823 - HP15_253 0.88 +1.3 243,956 + -3.8 243,956 - -4.4 244,040 + -3.4 244,110 + -1.1 244,111 + -0.5 244,111 + +0.5 244,111 + -0.9 244,199 + HP15_254 0.11 +1.7 244,230 - HP15_254 0.21 +0.3 244,270 - HP15_254 0.33 -2.2 244,286 + HP15_254 0.38 -0.4 244,286 + HP15_254 0.38 +0.4 244,293 - HP15_254 0.40 -0.5 244,294 - HP15_254 0.41 -0.6 244,296 + HP15_254 0.41 +0.4 244,366 + HP15_254 0.63 -0.9 244,403 + HP15_254 0.74 -0.8 244,715 - +2.9 244,779 + +0.1 244,823 + HP15_255 0.13 -0.9 244,823 + HP15_255 0.13 -2.6 244,831 - HP15_255 0.14 -2.2 245,030 - HP15_255 0.47 +0.4 245,030 - HP15_255 0.47 -0.1 245,162 - HP15_255 0.69 -0.3 245,176 + HP15_255 0.71 -0.4 245,184 - HP15_255 0.72 -1.8 245,224 + HP15_255 0.79 +1.4 245,232 - HP15_255 0.80 -0.3 245,233 + HP15_255 0.80 -0.4 245,247 - HP15_255 0.83 -2.1 245,313 - -0.1 245,367 + -0.1 245,398 - +0.6 245,398 - -3.2 245,433 + -1.2 245,448 - +0.3 245,459 - -1.6 245,459 - +1.6 245,470 - +0.9 245,490 + -0.1 245,600 - HP15_256 0.11 -1.4 245,825 - HP15_256 0.21 -1.6 245,833 + HP15_256 0.21 -0.2 245,923 - HP15_256 0.25 +0.5 246,207 - HP15_256 0.38 +1.2 246,223 + HP15_256 0.39 +0.4 246,230 - HP15_256 0.39 +0.9 246,231 - HP15_256 0.39 -0.3 246,306 - HP15_256 0.43 -0.2 246,338 - HP15_256 0.44 -0.1
Or see this region's nucleotide sequence