Strain Fitness in Marinobacter adhaerens HP15 around HP15_1732

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1730 and HP15_1731 are separated by 135 nucleotidesHP15_1731 and HP15_1732 overlap by 8 nucleotidesHP15_1732 and HP15_1733 are separated by 89 nucleotidesHP15_1733 and HP15_1734 are separated by 51 nucleotides HP15_1730: HP15_1730 - binding-protein-dependent transport systems inner membrane component, at 1,829,842 to 1,831,308 _1730 HP15_1731: HP15_1731 - conserved hypothetical protein, at 1,831,444 to 1,832,049 _1731 HP15_1732: HP15_1732 - conserved hypothetical protein, at 1,832,042 to 1,832,353 _1732 HP15_1733: HP15_1733 - conserved hypothetical protein, at 1,832,443 to 1,832,985 _1733 HP15_1734: HP15_1734 - ABC-type multidrug transport system, ATPase component, at 1,833,037 to 1,833,957 _1734 Position (kb) 1832 1833Strain fitness (log2 ratio) -3 -2 -1 0 1at 1831.148 kb on + strand, within HP15_1730at 1831.317 kb on - strandat 1831.390 kb on - strandat 1831.840 kb on - strand, within HP15_1731at 1831.924 kb on - strand, within HP15_1731at 1831.975 kb on - strand, within HP15_1731at 1832.106 kb on + strand, within HP15_1732at 1832.183 kb on + strand, within HP15_1732at 1832.191 kb on - strand, within HP15_1732at 1832.242 kb on + strand, within HP15_1732at 1832.404 kb on + strandat 1832.495 kb on + strandat 1832.782 kb on + strand, within HP15_1733at 1832.795 kb on - strand, within HP15_1733at 1832.929 kb on - strand, within HP15_1733at 1832.963 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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1,831,148 + HP15_1730 0.89 +0.6
1,831,317 - -1.2
1,831,390 - -1.1
1,831,840 - HP15_1731 0.65 -0.1
1,831,924 - HP15_1731 0.79 -0.2
1,831,975 - HP15_1731 0.88 +0.2
1,832,106 + HP15_1732 0.21 +0.2
1,832,183 + HP15_1732 0.45 +0.6
1,832,191 - HP15_1732 0.48 -0.2
1,832,242 + HP15_1732 0.64 +0.4
1,832,404 + -0.4
1,832,495 + -2.8
1,832,782 + HP15_1733 0.62 -1.6
1,832,795 - HP15_1733 0.65 -2.2
1,832,929 - HP15_1733 0.90 -1.6
1,832,963 - +0.4

Or see this region's nucleotide sequence