Strain Fitness in Marinobacter adhaerens HP15 around HP15_1665

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1663 and HP15_1664 are separated by 117 nucleotidesHP15_1664 and HP15_1665 are separated by 103 nucleotidesHP15_1665 and HP15_1666 are separated by 218 nucleotides HP15_1663: HP15_1663 - conserved hypothetical protein, at 1,755,172 to 1,756,167 _1663 HP15_1664: HP15_1664 - thioredoxin, at 1,756,285 to 1,756,608 _1664 HP15_1665: HP15_1665 - transcriptional regulator, LysR family, at 1,756,712 to 1,757,665 _1665 HP15_1666: HP15_1666 - conserved hypothetical protein, at 1,757,884 to 1,758,615 _1666 Position (kb) 1756 1757 1758Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1755.858 kb on + strand, within HP15_1663at 1756.026 kb on + strand, within HP15_1663at 1756.131 kb on + strandat 1756.131 kb on + strandat 1756.139 kb on - strandat 1756.139 kb on - strandat 1756.202 kb on + strandat 1756.282 kb on + strandat 1756.283 kb on - strandat 1756.328 kb on + strand, within HP15_1664at 1756.328 kb on + strand, within HP15_1664at 1756.330 kb on + strand, within HP15_1664at 1756.333 kb on + strand, within HP15_1664at 1756.336 kb on - strand, within HP15_1664at 1756.338 kb on - strand, within HP15_1664at 1756.340 kb on + strand, within HP15_1664at 1756.346 kb on + strand, within HP15_1664at 1756.354 kb on - strand, within HP15_1664at 1756.376 kb on + strand, within HP15_1664at 1756.462 kb on + strand, within HP15_1664at 1756.524 kb on + strand, within HP15_1664at 1756.538 kb on - strand, within HP15_1664at 1756.610 kb on + strandat 1756.727 kb on + strandat 1756.779 kb on + strandat 1756.881 kb on - strand, within HP15_1665at 1756.901 kb on - strand, within HP15_1665at 1756.941 kb on - strand, within HP15_1665at 1756.967 kb on - strand, within HP15_1665at 1757.083 kb on + strand, within HP15_1665at 1757.093 kb on - strand, within HP15_1665at 1757.123 kb on + strand, within HP15_1665at 1757.131 kb on - strand, within HP15_1665at 1757.143 kb on - strand, within HP15_1665at 1757.198 kb on - strand, within HP15_1665at 1757.257 kb on + strand, within HP15_1665at 1757.293 kb on + strand, within HP15_1665at 1757.298 kb on + strand, within HP15_1665at 1757.323 kb on - strand, within HP15_1665at 1757.340 kb on - strand, within HP15_1665at 1757.405 kb on - strand, within HP15_1665at 1757.443 kb on - strand, within HP15_1665at 1757.483 kb on - strand, within HP15_1665at 1757.489 kb on - strand, within HP15_1665at 1757.517 kb on + strand, within HP15_1665at 1757.525 kb on - strand, within HP15_1665at 1757.585 kb on + strandat 1757.988 kb on + strand, within HP15_1666at 1757.996 kb on - strand, within HP15_1666at 1758.163 kb on + strand, within HP15_1666at 1758.359 kb on - strand, within HP15_1666at 1758.369 kb on - strand, within HP15_1666at 1758.437 kb on - strand, within HP15_1666at 1758.486 kb on - strand, within HP15_1666at 1758.508 kb on + strand, within HP15_1666at 1758.550 kb on - strandat 1758.550 kb on - strandat 1758.573 kb on - strandat 1758.579 kb on + strandat 1758.579 kb on + strandat 1758.595 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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1,755,858 + HP15_1663 0.69 +0.9
1,756,026 + HP15_1663 0.86 -0.9
1,756,131 + -0.1
1,756,131 + +1.2
1,756,139 - -0.7
1,756,139 - +0.4
1,756,202 + +1.4
1,756,282 + -0.2
1,756,283 - -0.0
1,756,328 + HP15_1664 0.13 +0.5
1,756,328 + HP15_1664 0.13 -0.3
1,756,330 + HP15_1664 0.14 -0.1
1,756,333 + HP15_1664 0.15 -2.7
1,756,336 - HP15_1664 0.16 -1.0
1,756,338 - HP15_1664 0.16 +1.4
1,756,340 + HP15_1664 0.17 -2.7
1,756,346 + HP15_1664 0.19 -0.5
1,756,354 - HP15_1664 0.21 +0.4
1,756,376 + HP15_1664 0.28 +0.0
1,756,462 + HP15_1664 0.55 -1.7
1,756,524 + HP15_1664 0.74 -2.0
1,756,538 - HP15_1664 0.78 -0.3
1,756,610 + -0.4
1,756,727 + +0.8
1,756,779 + -0.2
1,756,881 - HP15_1665 0.18 +0.7
1,756,901 - HP15_1665 0.20 +0.6
1,756,941 - HP15_1665 0.24 -1.9
1,756,967 - HP15_1665 0.27 +0.3
1,757,083 + HP15_1665 0.39 -0.8
1,757,093 - HP15_1665 0.40 +1.1
1,757,123 + HP15_1665 0.43 -1.0
1,757,131 - HP15_1665 0.44 +2.1
1,757,143 - HP15_1665 0.45 +0.2
1,757,198 - HP15_1665 0.51 +1.6
1,757,257 + HP15_1665 0.57 +0.6
1,757,293 + HP15_1665 0.61 +1.1
1,757,298 + HP15_1665 0.61 +0.6
1,757,323 - HP15_1665 0.64 -1.3
1,757,340 - HP15_1665 0.66 +0.0
1,757,405 - HP15_1665 0.73 -0.1
1,757,443 - HP15_1665 0.77 -0.1
1,757,483 - HP15_1665 0.81 +1.7
1,757,489 - HP15_1665 0.81 -0.2
1,757,517 + HP15_1665 0.84 -0.0
1,757,525 - HP15_1665 0.85 +0.8
1,757,585 + +0.9
1,757,988 + HP15_1666 0.14 -0.2
1,757,996 - HP15_1666 0.15 -2.7
1,758,163 + HP15_1666 0.38 +0.7
1,758,359 - HP15_1666 0.65 +2.2
1,758,369 - HP15_1666 0.66 -0.5
1,758,437 - HP15_1666 0.76 +1.3
1,758,486 - HP15_1666 0.82 +0.1
1,758,508 + HP15_1666 0.85 +0.0
1,758,550 - +0.8
1,758,550 - -3.2
1,758,573 - +1.2
1,758,579 + +2.2
1,758,579 + -0.3
1,758,595 + +0.7

Or see this region's nucleotide sequence