Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_159 and HP15_160 are separated by 1 nucleotides HP15_160 and HP15_161 are separated by 79 nucleotides HP15_161 and HP15_162 are separated by 659 nucleotides HP15_162 and HP15_163 are separated by 68 nucleotides
HP15_159: HP15_159 - membrane protein containing cytochrome c assembly protein, transmembrane region domain, at 157,287 to 158,009
_159
HP15_160: HP15_160 - secreted protein containing DUF411, at 158,011 to 158,514
_160
HP15_161: HP15_161 - secreted protein, at 158,594 to 158,857
_161
HP15_162: HP15_162 - hypothetical protein, at 159,517 to 159,714
_162
HP15_163: HP15_163 - cation efflux family protein, at 159,783 to 160,688
_163
Position (kb) 158
159 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 157.627 kb on - strand, within HP15_159 at 157.627 kb on - strand, within HP15_159 at 157.644 kb on + strand, within HP15_159 at 157.704 kb on - strand, within HP15_159 at 157.713 kb on - strand, within HP15_159 at 157.760 kb on + strand, within HP15_159 at 157.869 kb on - strand, within HP15_159 at 157.872 kb on + strand, within HP15_159 at 157.872 kb on + strand, within HP15_159 at 157.894 kb on + strand, within HP15_159 at 157.939 kb on - strand at 157.961 kb on - strand at 157.985 kb on - strand at 158.025 kb on + strand at 158.188 kb on - strand, within HP15_160 at 158.293 kb on - strand, within HP15_160 at 158.316 kb on + strand, within HP15_160 at 158.340 kb on + strand, within HP15_160 at 158.340 kb on + strand, within HP15_160 at 158.340 kb on + strand, within HP15_160 at 158.348 kb on - strand, within HP15_160 at 158.377 kb on + strand, within HP15_160 at 158.387 kb on + strand, within HP15_160 at 158.410 kb on - strand, within HP15_160 at 158.439 kb on - strand, within HP15_160 at 158.552 kb on - strand at 158.591 kb on - strand at 158.652 kb on + strand, within HP15_161 at 158.775 kb on - strand, within HP15_161 at 158.815 kb on + strand, within HP15_161 at 158.815 kb on + strand, within HP15_161 at 158.818 kb on - strand, within HP15_161 at 158.873 kb on + strand at 158.972 kb on + strand at 159.035 kb on - strand at 159.037 kb on + strand at 159.040 kb on - strand at 159.066 kb on + strand at 159.074 kb on - strand at 159.119 kb on - strand at 159.129 kb on - strand at 159.185 kb on - strand at 159.214 kb on + strand at 159.217 kb on - strand at 159.222 kb on - strand at 159.260 kb on + strand at 159.310 kb on + strand at 159.361 kb on + strand at 159.393 kb on + strand at 159.411 kb on - strand at 159.459 kb on - strand at 159.543 kb on + strand, within HP15_162 at 159.586 kb on + strand, within HP15_162 at 159.594 kb on - strand, within HP15_162 at 159.713 kb on + strand at 159.753 kb on + strand at 159.777 kb on - strand at 159.817 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 157,627 - HP15_159 0.47 +0.0 157,627 - HP15_159 0.47 +0.1 157,644 + HP15_159 0.49 -1.2 157,704 - HP15_159 0.58 -0.1 157,713 - HP15_159 0.59 +0.9 157,760 + HP15_159 0.65 -0.5 157,869 - HP15_159 0.80 +0.1 157,872 + HP15_159 0.81 -0.3 157,872 + HP15_159 0.81 -0.4 157,894 + HP15_159 0.84 +0.1 157,939 - +1.0 157,961 - -0.1 157,985 - +0.2 158,025 + +0.1 158,188 - HP15_160 0.35 +0.4 158,293 - HP15_160 0.56 -0.4 158,316 + HP15_160 0.61 +0.8 158,340 + HP15_160 0.65 -1.4 158,340 + HP15_160 0.65 -0.9 158,340 + HP15_160 0.65 +0.2 158,348 - HP15_160 0.67 +0.6 158,377 + HP15_160 0.73 -0.5 158,387 + HP15_160 0.75 +0.2 158,410 - HP15_160 0.79 -0.2 158,439 - HP15_160 0.85 +0.5 158,552 - +0.1 158,591 - +0.1 158,652 + HP15_161 0.22 -0.8 158,775 - HP15_161 0.69 -1.1 158,815 + HP15_161 0.84 -0.7 158,815 + HP15_161 0.84 -0.4 158,818 - HP15_161 0.85 +0.9 158,873 + -1.3 158,972 + +0.2 159,035 - -0.9 159,037 + +0.4 159,040 - -0.1 159,066 + -0.5 159,074 - +0.7 159,119 - +0.2 159,129 - -0.5 159,185 - -0.2 159,214 + -0.3 159,217 - +1.1 159,222 - +0.3 159,260 + -0.9 159,310 + +1.1 159,361 + -0.8 159,393 + -0.7 159,411 - -2.6 159,459 - -0.6 159,543 + HP15_162 0.13 -0.1 159,586 + HP15_162 0.35 -0.3 159,594 - HP15_162 0.39 -0.2 159,713 + -3.3 159,753 + +3.5 159,777 - -1.1 159,817 - +1.9
Or see this region's nucleotide sequence