Strain Fitness in Marinobacter adhaerens HP15 around HP15_1463

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1461 and HP15_1462 overlap by 4 nucleotidesHP15_1462 and HP15_1463 are separated by 14 nucleotidesHP15_1463 and HP15_1464 are separated by 30 nucleotides HP15_1461: HP15_1461 - ATP-binding component of ABC transporter, at 1,537,308 to 1,538,258 _1461 HP15_1462: HP15_1462 - ABC-type multidrug transport system, permease component, at 1,538,255 to 1,539,028 _1462 HP15_1463: HP15_1463 - NADPH-dependent 7-cyano-7-deazaguanine reductase, at 1,539,043 to 1,539,861 _1463 HP15_1464: HP15_1464 - adenylate/guanylate cyclase, at 1,539,892 to 1,541,331 _1464 Position (kb) 1539 1540Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1538.208 kb on + strandat 1538.240 kb on - strandat 1538.363 kb on + strand, within HP15_1462at 1538.434 kb on + strand, within HP15_1462at 1538.529 kb on + strand, within HP15_1462at 1538.529 kb on + strand, within HP15_1462at 1538.537 kb on - strand, within HP15_1462at 1538.563 kb on - strand, within HP15_1462at 1538.565 kb on + strand, within HP15_1462at 1538.565 kb on + strand, within HP15_1462at 1538.573 kb on - strand, within HP15_1462at 1538.711 kb on - strand, within HP15_1462at 1538.711 kb on - strand, within HP15_1462at 1538.722 kb on + strand, within HP15_1462at 1538.726 kb on + strand, within HP15_1462at 1538.754 kb on + strand, within HP15_1462at 1538.766 kb on + strand, within HP15_1462at 1538.781 kb on + strand, within HP15_1462at 1538.812 kb on - strand, within HP15_1462at 1538.871 kb on + strand, within HP15_1462at 1538.871 kb on + strand, within HP15_1462at 1538.878 kb on + strand, within HP15_1462at 1538.879 kb on - strand, within HP15_1462at 1538.879 kb on - strand, within HP15_1462at 1538.879 kb on - strand, within HP15_1462at 1539.046 kb on - strandat 1539.098 kb on + strandat 1539.338 kb on - strand, within HP15_1463at 1539.376 kb on - strand, within HP15_1463at 1539.400 kb on + strand, within HP15_1463at 1539.408 kb on - strand, within HP15_1463at 1539.408 kb on - strand, within HP15_1463at 1539.557 kb on + strand, within HP15_1463at 1539.615 kb on + strand, within HP15_1463at 1539.622 kb on + strand, within HP15_1463at 1539.622 kb on + strand, within HP15_1463at 1539.763 kb on - strand, within HP15_1463at 1540.146 kb on - strand, within HP15_1464at 1540.303 kb on - strand, within HP15_1464at 1540.327 kb on - strand, within HP15_1464at 1540.418 kb on + strand, within HP15_1464at 1540.421 kb on - strand, within HP15_1464at 1540.421 kb on - strand, within HP15_1464at 1540.597 kb on - strand, within HP15_1464at 1540.754 kb on - strand, within HP15_1464at 1540.850 kb on - strand, within HP15_1464

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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1,538,208 + +0.5
1,538,240 - -0.3
1,538,363 + HP15_1462 0.14 -0.9
1,538,434 + HP15_1462 0.23 -0.6
1,538,529 + HP15_1462 0.35 -1.1
1,538,529 + HP15_1462 0.35 +0.7
1,538,537 - HP15_1462 0.36 +0.5
1,538,563 - HP15_1462 0.40 +2.1
1,538,565 + HP15_1462 0.40 +0.4
1,538,565 + HP15_1462 0.40 +0.7
1,538,573 - HP15_1462 0.41 +0.4
1,538,711 - HP15_1462 0.59 +0.6
1,538,711 - HP15_1462 0.59 +0.7
1,538,722 + HP15_1462 0.60 +0.2
1,538,726 + HP15_1462 0.61 -0.7
1,538,754 + HP15_1462 0.64 +0.1
1,538,766 + HP15_1462 0.66 -0.3
1,538,781 + HP15_1462 0.68 +0.1
1,538,812 - HP15_1462 0.72 +0.5
1,538,871 + HP15_1462 0.80 +0.5
1,538,871 + HP15_1462 0.80 -0.2
1,538,878 + HP15_1462 0.80 -0.8
1,538,879 - HP15_1462 0.81 +0.1
1,538,879 - HP15_1462 0.81 -3.0
1,538,879 - HP15_1462 0.81 +1.0
1,539,046 - +1.1
1,539,098 + +0.5
1,539,338 - HP15_1463 0.36 +0.5
1,539,376 - HP15_1463 0.41 -0.7
1,539,400 + HP15_1463 0.44 -1.0
1,539,408 - HP15_1463 0.45 -1.6
1,539,408 - HP15_1463 0.45 +0.2
1,539,557 + HP15_1463 0.63 -1.0
1,539,615 + HP15_1463 0.70 +0.1
1,539,622 + HP15_1463 0.71 -4.2
1,539,622 + HP15_1463 0.71 -0.1
1,539,763 - HP15_1463 0.88 -1.2
1,540,146 - HP15_1464 0.18 +0.9
1,540,303 - HP15_1464 0.29 -0.0
1,540,327 - HP15_1464 0.30 -1.6
1,540,418 + HP15_1464 0.37 +0.4
1,540,421 - HP15_1464 0.37 -0.9
1,540,421 - HP15_1464 0.37 +1.0
1,540,597 - HP15_1464 0.49 -0.4
1,540,754 - HP15_1464 0.60 -2.2
1,540,850 - HP15_1464 0.67 +0.2

Or see this region's nucleotide sequence