Strain Fitness in Shewanella amazonensis SB2B around Sama_2844

Experiment: D,L-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_2842 and Sama_2843 are separated by 59 nucleotidesSama_2843 and Sama_2844 are separated by 95 nucleotidesSama_2844 and Sama_2845 are separated by 111 nucleotidesSama_2845 and Sama_2846 are separated by 103 nucleotides Sama_2842: Sama_2842 - hypothetical protein (RefSeq), at 3,383,107 to 3,383,544 _2842 Sama_2843: Sama_2843 - hypothetical protein (RefSeq), at 3,383,604 to 3,383,912 _2843 Sama_2844: Sama_2844 - hypothetical protein (RefSeq), at 3,384,008 to 3,384,415 _2844 Sama_2845: Sama_2845 - hypothetical protein (RefSeq), at 3,384,527 to 3,384,970 _2845 Sama_2846: Sama_2846 - hypothetical protein (RefSeq), at 3,385,074 to 3,386,021 _2846 Position (kb) 3384 3385Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3383.043 kb on - strandat 3383.086 kb on - strandat 3383.086 kb on - strandat 3383.086 kb on - strandat 3383.087 kb on + strandat 3383.087 kb on + strandat 3383.087 kb on + strandat 3383.088 kb on - strandat 3383.088 kb on - strandat 3383.088 kb on - strandat 3383.088 kb on - strandat 3383.088 kb on - strandat 3383.088 kb on - strandat 3383.097 kb on - strandat 3383.135 kb on + strandat 3383.135 kb on + strandat 3383.136 kb on - strandat 3383.136 kb on - strandat 3383.136 kb on - strandat 3383.136 kb on - strandat 3383.136 kb on - strandat 3383.138 kb on + strandat 3383.138 kb on + strandat 3383.138 kb on + strandat 3383.138 kb on + strandat 3383.139 kb on - strandat 3383.139 kb on - strandat 3383.142 kb on + strandat 3383.142 kb on + strandat 3383.152 kb on + strand, within Sama_2842at 3383.152 kb on + strand, within Sama_2842at 3383.152 kb on + strand, within Sama_2842at 3383.153 kb on - strand, within Sama_2842at 3383.153 kb on - strand, within Sama_2842at 3383.153 kb on - strand, within Sama_2842at 3383.153 kb on - strand, within Sama_2842at 3383.163 kb on + strand, within Sama_2842at 3383.163 kb on + strand, within Sama_2842at 3383.164 kb on - strand, within Sama_2842at 3383.167 kb on - strand, within Sama_2842at 3383.167 kb on - strand, within Sama_2842at 3383.167 kb on - strand, within Sama_2842at 3383.167 kb on - strand, within Sama_2842at 3383.193 kb on + strand, within Sama_2842at 3383.194 kb on - strand, within Sama_2842at 3383.199 kb on + strand, within Sama_2842at 3383.199 kb on + strand, within Sama_2842at 3383.199 kb on + strand, within Sama_2842at 3383.239 kb on - strand, within Sama_2842at 3383.239 kb on - strand, within Sama_2842at 3383.254 kb on + strand, within Sama_2842at 3383.281 kb on + strand, within Sama_2842at 3383.291 kb on - strand, within Sama_2842at 3383.292 kb on + strand, within Sama_2842at 3383.293 kb on - strand, within Sama_2842at 3383.299 kb on - strand, within Sama_2842at 3383.299 kb on - strand, within Sama_2842at 3383.304 kb on - strand, within Sama_2842at 3383.304 kb on - strand, within Sama_2842at 3383.304 kb on - strand, within Sama_2842at 3383.304 kb on - strand, within Sama_2842at 3383.304 kb on - strand, within Sama_2842at 3383.305 kb on + strand, within Sama_2842at 3383.305 kb on + strand, within Sama_2842at 3383.306 kb on - strand, within Sama_2842at 3383.306 kb on - strand, within Sama_2842at 3383.306 kb on - strand, within Sama_2842at 3383.355 kb on - strand, within Sama_2842at 3383.395 kb on + strand, within Sama_2842at 3383.396 kb on - strand, within Sama_2842at 3383.403 kb on + strand, within Sama_2842at 3383.403 kb on + strand, within Sama_2842at 3383.419 kb on - strand, within Sama_2842at 3383.437 kb on - strand, within Sama_2842at 3383.439 kb on + strand, within Sama_2842at 3383.439 kb on + strand, within Sama_2842at 3383.439 kb on + strand, within Sama_2842at 3383.439 kb on + strand, within Sama_2842at 3383.439 kb on + strand, within Sama_2842at 3383.439 kb on + strand, within Sama_2842at 3383.439 kb on + strand, within Sama_2842at 3383.439 kb on + strand, within Sama_2842at 3383.439 kb on + strand, within Sama_2842at 3383.440 kb on - strand, within Sama_2842at 3383.442 kb on + strand, within Sama_2842at 3383.444 kb on + strand, within Sama_2842at 3383.445 kb on - strand, within Sama_2842at 3383.450 kb on + strand, within Sama_2842at 3383.463 kb on + strand, within Sama_2842at 3383.463 kb on + strand, within Sama_2842at 3383.463 kb on + strand, within Sama_2842at 3383.464 kb on - strand, within Sama_2842at 3383.467 kb on + strand, within Sama_2842at 3383.467 kb on + strand, within Sama_2842at 3383.467 kb on + strand, within Sama_2842at 3383.468 kb on - strand, within Sama_2842at 3383.492 kb on + strand, within Sama_2842at 3383.514 kb on + strandat 3383.514 kb on + strandat 3383.542 kb on + strandat 3383.543 kb on - strandat 3383.592 kb on + strandat 3383.593 kb on - strandat 3383.603 kb on + strandat 3383.604 kb on - strandat 3383.647 kb on + strand, within Sama_2843at 3383.647 kb on + strand, within Sama_2843at 3383.648 kb on - strand, within Sama_2843at 3383.648 kb on - strand, within Sama_2843at 3383.648 kb on - strand, within Sama_2843at 3383.648 kb on - strand, within Sama_2843at 3383.648 kb on - strand, within Sama_2843at 3383.663 kb on + strand, within Sama_2843at 3383.663 kb on + strand, within Sama_2843at 3383.663 kb on + strand, within Sama_2843at 3383.663 kb on + strand, within Sama_2843at 3383.663 kb on + strand, within Sama_2843at 3383.663 kb on + strand, within Sama_2843at 3383.664 kb on - strand, within Sama_2843at 3383.664 kb on - strand, within Sama_2843at 3383.664 kb on - strand, within Sama_2843at 3383.664 kb on - strand, within Sama_2843at 3383.664 kb on - strand, within Sama_2843at 3383.664 kb on - strand, within Sama_2843at 3383.664 kb on - strand, within Sama_2843at 3383.665 kb on + strand, within Sama_2843at 3383.665 kb on + strand, within Sama_2843at 3383.665 kb on + strand, within Sama_2843at 3383.665 kb on + strand, within Sama_2843at 3383.665 kb on + strand, within Sama_2843at 3383.665 kb on + strand, within Sama_2843at 3383.665 kb on + strand, within Sama_2843at 3383.666 kb on - strand, within Sama_2843at 3383.666 kb on - strand, within Sama_2843at 3383.666 kb on - strand, within Sama_2843at 3383.666 kb on - strand, within Sama_2843at 3383.666 kb on - strand, within Sama_2843at 3383.666 kb on - strand, within Sama_2843at 3383.666 kb on - strand, within Sama_2843at 3383.666 kb on - strand, within Sama_2843at 3383.666 kb on - strand, within Sama_2843at 3383.666 kb on - strand, within Sama_2843at 3383.672 kb on - strand, within Sama_2843at 3383.689 kb on + strand, within Sama_2843at 3383.689 kb on + strand, within Sama_2843at 3383.689 kb on + strand, within Sama_2843at 3383.689 kb on + strand, within Sama_2843at 3383.689 kb on + strand, within Sama_2843at 3383.689 kb on + strand, within Sama_2843at 3383.690 kb on - strand, within Sama_2843at 3383.690 kb on - strand, within Sama_2843at 3383.690 kb on - strand, within Sama_2843at 3383.696 kb on - strand, within Sama_2843at 3383.696 kb on - strand, within Sama_2843at 3383.700 kb on + strand, within Sama_2843at 3383.701 kb on - strand, within Sama_2843at 3383.701 kb on - strand, within Sama_2843at 3383.701 kb on - strand, within Sama_2843at 3383.721 kb on + strand, within Sama_2843at 3383.721 kb on + strand, within Sama_2843at 3383.721 kb on + strand, within Sama_2843at 3383.721 kb on + strand, within Sama_2843at 3383.728 kb on + strand, within Sama_2843at 3383.728 kb on + strand, within Sama_2843at 3383.729 kb on - strand, within Sama_2843at 3383.729 kb on - strand, within Sama_2843at 3383.729 kb on - strand, within Sama_2843at 3383.764 kb on + strand, within Sama_2843at 3383.765 kb on - strand, within Sama_2843at 3383.839 kb on + strand, within Sama_2843at 3383.839 kb on + strand, within Sama_2843at 3383.839 kb on + strand, within Sama_2843at 3383.839 kb on + strand, within Sama_2843at 3383.840 kb on - strand, within Sama_2843at 3383.840 kb on - strand, within Sama_2843at 3383.854 kb on + strand, within Sama_2843at 3383.855 kb on + strand, within Sama_2843at 3383.870 kb on - strand, within Sama_2843at 3383.910 kb on + strandat 3383.910 kb on + strandat 3383.910 kb on + strandat 3383.911 kb on - strandat 3383.911 kb on - strandat 3383.985 kb on - strandat 3384.006 kb on - strandat 3384.060 kb on + strand, within Sama_2844at 3384.060 kb on + strand, within Sama_2844at 3384.060 kb on + strand, within Sama_2844at 3384.066 kb on + strand, within Sama_2844at 3384.067 kb on - strand, within Sama_2844at 3384.222 kb on + strand, within Sama_2844at 3384.319 kb on - strand, within Sama_2844at 3384.338 kb on + strand, within Sama_2844at 3384.413 kb on + strandat 3384.511 kb on + strandat 3384.527 kb on - strandat 3384.527 kb on - strandat 3384.603 kb on - strand, within Sama_2845at 3384.607 kb on + strand, within Sama_2845at 3384.607 kb on + strand, within Sama_2845at 3384.608 kb on - strand, within Sama_2845at 3384.618 kb on + strand, within Sama_2845at 3384.629 kb on + strand, within Sama_2845at 3384.633 kb on + strand, within Sama_2845at 3384.633 kb on + strand, within Sama_2845at 3384.634 kb on - strand, within Sama_2845at 3384.644 kb on - strand, within Sama_2845at 3384.644 kb on - strand, within Sama_2845at 3384.663 kb on - strand, within Sama_2845at 3384.674 kb on + strand, within Sama_2845at 3384.676 kb on + strand, within Sama_2845at 3384.714 kb on - strand, within Sama_2845at 3384.840 kb on - strand, within Sama_2845at 3384.850 kb on + strand, within Sama_2845at 3384.888 kb on + strand, within Sama_2845at 3384.923 kb on + strand, within Sama_2845at 3384.925 kb on + strand, within Sama_2845at 3384.925 kb on + strand, within Sama_2845at 3384.925 kb on + strand, within Sama_2845at 3384.930 kb on - strandat 3384.968 kb on + strandat 3385.020 kb on + strandat 3385.021 kb on - strandat 3385.043 kb on - strandat 3385.047 kb on + strandat 3385.048 kb on - strandat 3385.048 kb on - strandat 3385.048 kb on - strandat 3385.048 kb on - strandat 3385.048 kb on - strandat 3385.084 kb on + strandat 3385.096 kb on + strandat 3385.110 kb on - strandat 3385.130 kb on + strandat 3385.131 kb on - strandat 3385.193 kb on - strand, within Sama_2846at 3385.195 kb on + strand, within Sama_2846at 3385.237 kb on + strand, within Sama_2846at 3385.238 kb on - strand, within Sama_2846at 3385.238 kb on - strand, within Sama_2846at 3385.325 kb on + strand, within Sama_2846at 3385.325 kb on + strand, within Sama_2846at 3385.363 kb on + strand, within Sama_2846

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate
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3,383,043 - -0.4
3,383,086 - -0.5
3,383,086 - +0.7
3,383,086 - -1.6
3,383,087 + +1.3
3,383,087 + +0.4
3,383,087 + -0.3
3,383,088 - -2.2
3,383,088 - +0.6
3,383,088 - -1.3
3,383,088 - -0.2
3,383,088 - +0.4
3,383,088 - +0.8
3,383,097 - -0.6
3,383,135 + -0.7
3,383,135 + -1.2
3,383,136 - -2.3
3,383,136 - -0.1
3,383,136 - +0.1
3,383,136 - +0.7
3,383,136 - +0.3
3,383,138 + -1.2
3,383,138 + +0.9
3,383,138 + +0.4
3,383,138 + +1.2
3,383,139 - -0.0
3,383,139 - +1.0
3,383,142 + +0.2
3,383,142 + -0.2
3,383,152 + Sama_2842 0.10 -0.1
3,383,152 + Sama_2842 0.10 +0.9
3,383,152 + Sama_2842 0.10 +0.9
3,383,153 - Sama_2842 0.11 +0.4
3,383,153 - Sama_2842 0.11 -0.3
3,383,153 - Sama_2842 0.11 -0.1
3,383,153 - Sama_2842 0.11 +1.0
3,383,163 + Sama_2842 0.13 -0.4
3,383,163 + Sama_2842 0.13 -0.4
3,383,164 - Sama_2842 0.13 +0.5
3,383,167 - Sama_2842 0.14 -0.2
3,383,167 - Sama_2842 0.14 +0.3
3,383,167 - Sama_2842 0.14 +0.5
3,383,167 - Sama_2842 0.14 +0.3
3,383,193 + Sama_2842 0.20 +1.2
3,383,194 - Sama_2842 0.20 -2.4
3,383,199 + Sama_2842 0.21 -0.2
3,383,199 + Sama_2842 0.21 -0.1
3,383,199 + Sama_2842 0.21 -1.4
3,383,239 - Sama_2842 0.30 -0.3
3,383,239 - Sama_2842 0.30 -1.5
3,383,254 + Sama_2842 0.34 -1.4
3,383,281 + Sama_2842 0.40 -0.8
3,383,291 - Sama_2842 0.42 -0.1
3,383,292 + Sama_2842 0.42 -0.2
3,383,293 - Sama_2842 0.42 +1.9
3,383,299 - Sama_2842 0.44 -0.5
3,383,299 - Sama_2842 0.44 +0.5
3,383,304 - Sama_2842 0.45 +1.1
3,383,304 - Sama_2842 0.45 -1.0
3,383,304 - Sama_2842 0.45 -1.2
3,383,304 - Sama_2842 0.45 -0.1
3,383,304 - Sama_2842 0.45 -1.0
3,383,305 + Sama_2842 0.45 -1.0
3,383,305 + Sama_2842 0.45 -0.4
3,383,306 - Sama_2842 0.45 -0.4
3,383,306 - Sama_2842 0.45 +1.4
3,383,306 - Sama_2842 0.45 +0.4
3,383,355 - Sama_2842 0.57 -0.7
3,383,395 + Sama_2842 0.66 +1.7
3,383,396 - Sama_2842 0.66 +0.2
3,383,403 + Sama_2842 0.68 +0.2
3,383,403 + Sama_2842 0.68 +1.9
3,383,419 - Sama_2842 0.71 -0.0
3,383,437 - Sama_2842 0.75 -0.1
3,383,439 + Sama_2842 0.76 -0.4
3,383,439 + Sama_2842 0.76 -1.2
3,383,439 + Sama_2842 0.76 +0.2
3,383,439 + Sama_2842 0.76 -1.2
3,383,439 + Sama_2842 0.76 +1.1
3,383,439 + Sama_2842 0.76 +0.2
3,383,439 + Sama_2842 0.76 +0.4
3,383,439 + Sama_2842 0.76 -1.3
3,383,439 + Sama_2842 0.76 -0.9
3,383,440 - Sama_2842 0.76 -0.3
3,383,442 + Sama_2842 0.76 -1.7
3,383,444 + Sama_2842 0.77 +0.4
3,383,445 - Sama_2842 0.77 +0.4
3,383,450 + Sama_2842 0.78 -0.5
3,383,463 + Sama_2842 0.81 +0.3
3,383,463 + Sama_2842 0.81 +0.0
3,383,463 + Sama_2842 0.81 -0.7
3,383,464 - Sama_2842 0.82 +0.2
3,383,467 + Sama_2842 0.82 -0.6
3,383,467 + Sama_2842 0.82 +1.2
3,383,467 + Sama_2842 0.82 -0.3
3,383,468 - Sama_2842 0.82 -0.7
3,383,492 + Sama_2842 0.88 -0.8
3,383,514 + -0.8
3,383,514 + +1.2
3,383,542 + -2.5
3,383,543 - +1.2
3,383,592 + -0.2
3,383,593 - -0.8
3,383,603 + +0.6
3,383,604 - -1.3
3,383,647 + Sama_2843 0.14 -0.7
3,383,647 + Sama_2843 0.14 +1.7
3,383,648 - Sama_2843 0.14 -0.4
3,383,648 - Sama_2843 0.14 -0.1
3,383,648 - Sama_2843 0.14 +0.3
3,383,648 - Sama_2843 0.14 -0.3
3,383,648 - Sama_2843 0.14 +0.8
3,383,663 + Sama_2843 0.19 -0.8
3,383,663 + Sama_2843 0.19 +0.2
3,383,663 + Sama_2843 0.19 -1.6
3,383,663 + Sama_2843 0.19 +1.2
3,383,663 + Sama_2843 0.19 +1.2
3,383,663 + Sama_2843 0.19 +0.2
3,383,664 - Sama_2843 0.19 +1.5
3,383,664 - Sama_2843 0.19 -0.2
3,383,664 - Sama_2843 0.19 +0.2
3,383,664 - Sama_2843 0.19 +0.3
3,383,664 - Sama_2843 0.19 -0.5
3,383,664 - Sama_2843 0.19 -1.2
3,383,664 - Sama_2843 0.19 -1.2
3,383,665 + Sama_2843 0.20 -0.1
3,383,665 + Sama_2843 0.20 -0.8
3,383,665 + Sama_2843 0.20 -1.2
3,383,665 + Sama_2843 0.20 -0.4
3,383,665 + Sama_2843 0.20 -1.2
3,383,665 + Sama_2843 0.20 -0.0
3,383,665 + Sama_2843 0.20 -1.9
3,383,666 - Sama_2843 0.20 -0.3
3,383,666 - Sama_2843 0.20 -1.2
3,383,666 - Sama_2843 0.20 +2.3
3,383,666 - Sama_2843 0.20 -0.8
3,383,666 - Sama_2843 0.20 +0.4
3,383,666 - Sama_2843 0.20 -1.2
3,383,666 - Sama_2843 0.20 -0.1
3,383,666 - Sama_2843 0.20 +0.8
3,383,666 - Sama_2843 0.20 -0.4
3,383,666 - Sama_2843 0.20 -0.7
3,383,672 - Sama_2843 0.22 -0.3
3,383,689 + Sama_2843 0.28 -3.0
3,383,689 + Sama_2843 0.28 -1.3
3,383,689 + Sama_2843 0.28 -0.9
3,383,689 + Sama_2843 0.28 -0.5
3,383,689 + Sama_2843 0.28 -1.0
3,383,689 + Sama_2843 0.28 +0.2
3,383,690 - Sama_2843 0.28 +0.2
3,383,690 - Sama_2843 0.28 -1.6
3,383,690 - Sama_2843 0.28 +1.1
3,383,696 - Sama_2843 0.30 +0.2
3,383,696 - Sama_2843 0.30 +1.0
3,383,700 + Sama_2843 0.31 +0.8
3,383,701 - Sama_2843 0.31 -1.1
3,383,701 - Sama_2843 0.31 +0.7
3,383,701 - Sama_2843 0.31 +0.8
3,383,721 + Sama_2843 0.38 -1.8
3,383,721 + Sama_2843 0.38 -2.2
3,383,721 + Sama_2843 0.38 +0.2
3,383,721 + Sama_2843 0.38 +0.2
3,383,728 + Sama_2843 0.40 -1.2
3,383,728 + Sama_2843 0.40 -1.0
3,383,729 - Sama_2843 0.40 +0.4
3,383,729 - Sama_2843 0.40 +1.2
3,383,729 - Sama_2843 0.40 +0.2
3,383,764 + Sama_2843 0.52 -1.3
3,383,765 - Sama_2843 0.52 +0.1
3,383,839 + Sama_2843 0.76 -0.7
3,383,839 + Sama_2843 0.76 -0.8
3,383,839 + Sama_2843 0.76 -1.4
3,383,839 + Sama_2843 0.76 -0.3
3,383,840 - Sama_2843 0.76 -0.8
3,383,840 - Sama_2843 0.76 -0.4
3,383,854 + Sama_2843 0.81 -0.4
3,383,855 + Sama_2843 0.81 -2.4
3,383,870 - Sama_2843 0.86 +0.0
3,383,910 + +3.2
3,383,910 + +0.1
3,383,910 + -0.9
3,383,911 - +0.4
3,383,911 - +0.4
3,383,985 - +1.2
3,384,006 - -0.8
3,384,060 + Sama_2844 0.13 +1.8
3,384,060 + Sama_2844 0.13 +0.2
3,384,060 + Sama_2844 0.13 +1.1
3,384,066 + Sama_2844 0.14 +0.9
3,384,067 - Sama_2844 0.14 +0.7
3,384,222 + Sama_2844 0.52 +0.5
3,384,319 - Sama_2844 0.76 +0.0
3,384,338 + Sama_2844 0.81 +0.5
3,384,413 + +1.0
3,384,511 + +0.2
3,384,527 - +0.2
3,384,527 - +0.5
3,384,603 - Sama_2845 0.17 +0.2
3,384,607 + Sama_2845 0.18 +1.8
3,384,607 + Sama_2845 0.18 -0.6
3,384,608 - Sama_2845 0.18 -0.1
3,384,618 + Sama_2845 0.20 +0.2
3,384,629 + Sama_2845 0.23 -0.6
3,384,633 + Sama_2845 0.24 +0.3
3,384,633 + Sama_2845 0.24 -1.1
3,384,634 - Sama_2845 0.24 -0.1
3,384,644 - Sama_2845 0.26 +0.5
3,384,644 - Sama_2845 0.26 +0.3
3,384,663 - Sama_2845 0.31 +0.6
3,384,674 + Sama_2845 0.33 -0.2
3,384,676 + Sama_2845 0.34 +0.1
3,384,714 - Sama_2845 0.42 +1.5
3,384,840 - Sama_2845 0.70 +0.6
3,384,850 + Sama_2845 0.73 +1.2
3,384,888 + Sama_2845 0.81 +0.9
3,384,923 + Sama_2845 0.89 +0.3
3,384,925 + Sama_2845 0.90 +0.2
3,384,925 + Sama_2845 0.90 +0.4
3,384,925 + Sama_2845 0.90 -1.0
3,384,930 - +0.2
3,384,968 + -1.4
3,385,020 + +1.7
3,385,021 - -0.8
3,385,043 - +0.1
3,385,047 + -0.2
3,385,048 - +0.6
3,385,048 - +0.3
3,385,048 - -0.4
3,385,048 - -1.3
3,385,048 - +1.0
3,385,084 + +1.4
3,385,096 + +0.7
3,385,110 - -1.0
3,385,130 + -1.3
3,385,131 - -0.4
3,385,193 - Sama_2846 0.13 +0.2
3,385,195 + Sama_2846 0.13 -0.8
3,385,237 + Sama_2846 0.17 +0.4
3,385,238 - Sama_2846 0.17 -0.4
3,385,238 - Sama_2846 0.17 -0.2
3,385,325 + Sama_2846 0.26 +0.3
3,385,325 + Sama_2846 0.26 +0.2
3,385,363 + Sama_2846 0.30 -0.4

Or see this region's nucleotide sequence