Strain Fitness in Shewanella amazonensis SB2B around Sama_2629

Experiment: D,L-Lactate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D,L-Lactate
3,147,746	+				-2.7
3,147,746	+				-3.5
3,147,747	-				-2.5
3,147,747	-				-3.9
3,147,747	-				-4.1
3,147,747	-				-2.0
3,147,755	+				-2.4
3,147,755	+				-2.8
3,147,756	-				-2.0
3,147,761	+				-1.8
3,147,761	+				-3.0
3,147,761	+				-3.0
3,147,761	+				-2.8
3,147,761	+				-2.8
3,147,761	+				-2.0
3,147,761	+				-2.0
3,147,762	-				-0.1
3,147,762	-				-3.6
3,147,862	-		Sama_2628	0.12	-1.0
3,147,995	+		Sama_2628	0.27	-2.6
3,147,995	+		Sama_2628	0.27	-2.0
3,147,996	-		Sama_2628	0.27	-1.0
3,148,082	+		Sama_2628	0.37	-1.3
3,148,082	+		Sama_2628	0.37	-0.5
3,148,083	-		Sama_2628	0.37	-2.7
3,148,124	+		Sama_2628	0.41	-2.1
3,148,124	+		Sama_2628	0.41	-2.4
3,148,124	+		Sama_2628	0.41	-2.9
3,148,124	+		Sama_2628	0.41	-1.3
3,148,184	+		Sama_2628	0.48	-2.8
3,148,184	+		Sama_2628	0.48	-2.7
3,148,185	-		Sama_2628	0.48	-3.2
3,148,222	+		Sama_2628	0.52	-4.5
3,148,222	+		Sama_2628	0.52	-1.7
3,148,222	+		Sama_2628	0.52	-1.3
3,148,222	+		Sama_2628	0.52	-2.0
3,148,222	+		Sama_2628	0.52	+1.0
3,148,222	+		Sama_2628	0.52	-1.5
3,148,326	+		Sama_2628	0.64	-3.2
3,148,326	+		Sama_2628	0.64	-1.8
3,148,326	+		Sama_2628	0.64	-4.2
3,148,327	-		Sama_2628	0.64	-1.0
3,148,327	-		Sama_2628	0.64	-1.8
3,148,327	-		Sama_2628	0.64	-1.7
3,148,327	-		Sama_2628	0.64	-1.0
3,148,327	-		Sama_2628	0.64	-1.5
3,148,328	+		Sama_2628	0.64	-2.3
3,148,328	+		Sama_2628	0.64	-1.3
3,148,328	+		Sama_2628	0.64	-1.8
3,148,328	+		Sama_2628	0.64	-1.3
3,148,328	+		Sama_2628	0.64	-1.3
3,148,328	+		Sama_2628	0.64	-3.0
3,148,328	+		Sama_2628	0.64	-1.3
3,148,328	+		Sama_2628	0.64	-1.3
3,148,328	+		Sama_2628	0.64	-1.8
3,148,328	+		Sama_2628	0.64	-2.1
3,148,328	+		Sama_2628	0.64	-1.0
3,148,328	+		Sama_2628	0.64	-3.0
3,148,328	+		Sama_2628	0.64	-1.2
3,148,328	+		Sama_2628	0.64	-2.3
3,148,328	+		Sama_2628	0.64	-2.5
3,148,329	-		Sama_2628	0.64	-1.3
3,148,329	-		Sama_2628	0.64	-2.4
3,148,329	-		Sama_2628	0.64	-1.5
3,148,329	-		Sama_2628	0.64	-2.5
3,148,329	-		Sama_2628	0.64	-1.5
3,148,329	-		Sama_2628	0.64	-2.7
3,148,329	-		Sama_2628	0.64	-2.1
3,148,329	-		Sama_2628	0.64	-3.3
3,148,329	-		Sama_2628	0.64	-0.3
3,148,329	-		Sama_2628	0.64	-1.5
3,148,329	-		Sama_2628	0.64	-1.5
3,148,329	-		Sama_2628	0.64	-2.2
3,148,329	-		Sama_2628	0.64	-2.9
3,148,329	-		Sama_2628	0.64	-1.5
3,148,329	-		Sama_2628	0.64	-3.1
3,148,329	-		Sama_2628	0.64	-1.5
3,148,333	+		Sama_2628	0.65	-1.4
3,148,376	+		Sama_2628	0.69	+0.0
3,148,376	+		Sama_2628	0.69	-3.0
3,148,461	+		Sama_2628	0.79	-0.5
3,148,461	+		Sama_2628	0.79	-2.7
3,148,461	+		Sama_2628	0.79	-3.8
3,148,461	+		Sama_2628	0.79	-2.0
3,148,462	-		Sama_2628	0.79	-3.7
3,148,462	-		Sama_2628	0.79	-2.3
3,148,462	-		Sama_2628	0.79	-2.9
3,148,463	+		Sama_2628	0.79	-1.5
3,148,463	+		Sama_2628	0.79	-3.1
3,148,463	+		Sama_2628	0.79	-2.1
3,148,463	+		Sama_2628	0.79	-3.0
3,148,507	-		Sama_2628	0.84	-1.3
3,148,565	-				-3.1
3,148,603	+				-2.1
3,148,604	-				-2.2
3,148,648	+				-0.3
3,148,648	+				-1.7
3,148,649	-				-0.8
3,148,649	-				+1.0
3,148,649	-				-0.4
3,148,659	+				-0.8
3,148,659	+				+0.0
3,148,660	-				+1.8
3,148,660	-				-1.5
3,148,662	-				-0.4
3,148,662	-				-1.0
3,148,662	-				+1.9
3,148,662	-				-0.5
3,148,689	-				+0.5
3,148,691	-				-2.8
3,148,739	+				-0.7
3,148,839	+		Sama_2629	0.14	-1.0
3,148,840	-		Sama_2629	0.14	-0.5
3,148,912	-		Sama_2629	0.24	+1.0
3,148,912	-		Sama_2629	0.24	-1.8
3,148,912	-		Sama_2629	0.24	-2.4
3,148,915	+		Sama_2629	0.24	-1.1
3,148,915	+		Sama_2629	0.24	-0.8
3,148,915	+		Sama_2629	0.24	-1.3
3,148,916	-		Sama_2629	0.24	-2.4
3,148,916	-		Sama_2629	0.24	-3.5
3,148,916	-		Sama_2629	0.24	-0.1
3,148,916	-		Sama_2629	0.24	-0.8
3,148,971	-		Sama_2629	0.32	-1.8
3,149,067	+		Sama_2629	0.45	-2.0
3,149,122	+		Sama_2629	0.53	-2.7
3,149,172	-		Sama_2629	0.60	-0.8
3,149,186	+		Sama_2629	0.61	-3.0
3,149,186	+		Sama_2629	0.61	-1.3
3,149,192	+		Sama_2629	0.62	-1.1
3,149,193	-		Sama_2629	0.62	-2.0
3,149,245	-		Sama_2629	0.70	-1.6
3,149,250	+		Sama_2629	0.70	-2.3
3,149,251	-		Sama_2629	0.70	+1.0
3,149,290	+		Sama_2629	0.76	-1.0
3,149,290	+		Sama_2629	0.76	-1.9
3,149,290	+		Sama_2629	0.76	-2.1
3,149,290	+		Sama_2629	0.76	-2.1
3,149,290	+		Sama_2629	0.76	-2.5
3,149,291	-		Sama_2629	0.76	-1.0
3,149,291	-		Sama_2629	0.76	-3.0
3,149,291	-		Sama_2629	0.76	-2.5
3,149,291	-		Sama_2629	0.76	-2.1
3,149,326	-		Sama_2629	0.81	-1.6
3,149,326	-		Sama_2629	0.81	-2.5
3,149,337	+		Sama_2629	0.82	+1.0
3,149,337	+		Sama_2629	0.82	-2.8
3,149,338	-		Sama_2629	0.82	-1.0
3,149,399	-				-2.6
3,149,401	+				-1.0
3,149,402	-				-2.2
3,149,402	-				-2.2
3,149,402	-				-0.5
3,149,473	-				-2.0
3,149,478	-				+1.8
3,149,520	-				-1.5
3,149,525	+				-0.9
3,149,544	-				+1.3
3,149,544	-				+1.0
3,149,544	-				-0.1
3,149,626	+				-0.5
3,149,626	+				-0.0
3,149,626	+				-0.3
3,149,627	-				-2.3
3,149,681	-				+0.1
3,149,694	+		Sama_2630	0.12	-0.3
3,149,694	+		Sama_2630	0.12	-0.9
3,149,748	-		Sama_2630	0.21	+1.1
3,149,791	+		Sama_2630	0.28	-0.2
3,149,791	+		Sama_2630	0.28	+0.1
3,149,791	+		Sama_2630	0.28	-0.5
3,149,791	+		Sama_2630	0.28	+0.3
3,149,792	-		Sama_2630	0.28	+1.1
3,149,792	-		Sama_2630	0.28	-0.9
3,149,792	-		Sama_2630	0.28	+0.1
3,149,792	-		Sama_2630	0.28	+1.4
3,149,799	+		Sama_2630	0.29	+0.6
3,149,800	-		Sama_2630	0.29	-0.7
3,149,808	+		Sama_2630	0.31	-1.1
3,149,830	-		Sama_2630	0.34	+0.4
3,149,873	+		Sama_2630	0.42	-0.3
3,149,874	-		Sama_2630	0.42	-0.6
3,149,879	+		Sama_2630	0.43	-0.7
3,149,879	+		Sama_2630	0.43	-0.1
3,149,880	-		Sama_2630	0.43	-1.4
3,149,880	-		Sama_2630	0.43	-0.0
3,149,880	-		Sama_2630	0.43	+0.2
3,149,880	-		Sama_2630	0.43	-1.0
3,149,880	-		Sama_2630	0.43	-1.4
3,149,897	+		Sama_2630	0.46	+0.2
3,149,898	-		Sama_2630	0.46	-0.9
3,149,909	+		Sama_2630	0.48	+1.4
3,149,928	-		Sama_2630	0.51	-1.9
3,149,928	-		Sama_2630	0.51	+1.6
3,149,928	-		Sama_2630	0.51	+0.9
3,149,928	-		Sama_2630	0.51	-0.9
3,149,930	-		Sama_2630	0.51	-0.8
3,149,951	+		Sama_2630	0.55	-1.5
3,149,951	+		Sama_2630	0.55	-0.5
3,149,952	-		Sama_2630	0.55	+0.1
3,149,952	-		Sama_2630	0.55	-1.5
3,150,036	-		Sama_2630	0.69	-1.7
3,150,036	-		Sama_2630	0.69	+0.5
3,150,077	-		Sama_2630	0.76	+0.1
3,150,111	+		Sama_2630	0.81	+1.1
3,150,112	-		Sama_2630	0.82	-1.8
3,150,112	-		Sama_2630	0.82	-1.2
3,150,216	-				-1.3
3,150,216	-				+1.5
3,150,238	+				-0.5
3,150,239	-				+0.9
3,150,302	+				-1.5
3,150,303	-				+0.1
3,150,303	-				-1.4
3,150,303	-				-0.5
3,150,303	-				-3.2
3,150,309	-				-2.1
3,150,309	-				-1.1
3,150,354	-				-3.5
3,150,356	+				-2.1
3,150,356	+				-2.5
3,150,357	-				-2.3
3,150,377	+				-3.3
3,150,377	+				-0.5
3,150,378	-				-0.5
3,150,378	-				-2.7
3,150,396	-				-2.9