Strain Fitness in Shewanella amazonensis SB2B around Sama_2432

Experiment: D,L-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_2431 and motB are separated by 238 nucleotidesmotB and Sama_2433 are separated by 4 nucleotides Sama_2431: Sama_2431 - thiamine biosynthesis protein ThiI (RefSeq), at 2,924,723 to 2,926,177 _2431 Sama_2432: motB - flagellar motor protein MotB (RefSeq), at 2,926,416 to 2,927,354 motB Sama_2433: Sama_2433 - flagellar motor protein PomA (RefSeq), at 2,927,359 to 2,928,126 _2433 Position (kb) 2926 2927 2928Strain fitness (log2 ratio) -1 0 1 2 3 4 5at 2925.905 kb on - strand, within Sama_2431at 2926.243 kb on - strandat 2926.243 kb on - strandat 2926.243 kb on - strandat 2926.244 kb on + strandat 2926.244 kb on + strandat 2926.245 kb on - strandat 2926.313 kb on + strandat 2926.313 kb on + strandat 2926.314 kb on - strandat 2926.314 kb on - strandat 2926.341 kb on + strandat 2926.376 kb on + strandat 2926.377 kb on - strandat 2926.377 kb on - strandat 2926.418 kb on - strandat 2926.421 kb on + strandat 2926.422 kb on - strandat 2926.422 kb on - strandat 2926.422 kb on - strandat 2926.422 kb on - strandat 2926.443 kb on + strandat 2926.443 kb on + strandat 2926.444 kb on - strandat 2926.444 kb on - strandat 2926.444 kb on - strandat 2926.444 kb on - strandat 2926.541 kb on + strand, within motBat 2926.596 kb on + strand, within motBat 2926.655 kb on - strand, within motBat 2926.655 kb on - strand, within motBat 2926.701 kb on - strand, within motBat 2926.701 kb on - strand, within motBat 2926.723 kb on - strand, within motBat 2926.723 kb on - strand, within motBat 2926.723 kb on - strand, within motBat 2926.814 kb on + strand, within motBat 2926.814 kb on + strand, within motBat 2926.815 kb on - strand, within motBat 2926.908 kb on - strand, within motBat 2926.908 kb on - strand, within motBat 2926.908 kb on - strand, within motBat 2926.908 kb on - strand, within motBat 2926.908 kb on - strand, within motBat 2927.156 kb on + strand, within motBat 2927.174 kb on + strand, within motBat 2927.174 kb on + strand, within motBat 2927.175 kb on - strand, within motBat 2927.175 kb on - strand, within motBat 2927.175 kb on - strand, within motBat 2927.175 kb on - strand, within motBat 2927.194 kb on + strand, within motBat 2927.195 kb on - strand, within motBat 2927.195 kb on - strand, within motBat 2927.195 kb on - strand, within motBat 2927.202 kb on - strand, within motBat 2927.202 kb on - strand, within motBat 2927.202 kb on - strand, within motBat 2927.354 kb on + strandat 2927.380 kb on + strandat 2927.475 kb on + strand, within Sama_2433at 2927.481 kb on + strand, within Sama_2433at 2927.505 kb on + strand, within Sama_2433at 2927.505 kb on + strand, within Sama_2433at 2927.505 kb on + strand, within Sama_2433at 2927.521 kb on - strand, within Sama_2433at 2927.556 kb on + strand, within Sama_2433at 2927.556 kb on + strand, within Sama_2433at 2927.557 kb on - strand, within Sama_2433at 2927.557 kb on - strand, within Sama_2433at 2927.565 kb on - strand, within Sama_2433at 2927.565 kb on - strand, within Sama_2433at 2927.576 kb on - strand, within Sama_2433at 2927.655 kb on + strand, within Sama_2433at 2927.703 kb on + strand, within Sama_2433at 2927.703 kb on + strand, within Sama_2433at 2927.703 kb on + strand, within Sama_2433at 2927.704 kb on - strand, within Sama_2433at 2927.704 kb on - strand, within Sama_2433at 2927.707 kb on + strand, within Sama_2433at 2927.707 kb on + strand, within Sama_2433at 2927.707 kb on + strand, within Sama_2433at 2927.707 kb on + strand, within Sama_2433at 2927.708 kb on - strand, within Sama_2433at 2927.708 kb on - strand, within Sama_2433at 2927.708 kb on - strand, within Sama_2433at 2927.708 kb on - strand, within Sama_2433at 2927.708 kb on - strand, within Sama_2433at 2927.708 kb on - strand, within Sama_2433at 2927.708 kb on - strand, within Sama_2433at 2927.708 kb on - strand, within Sama_2433at 2927.743 kb on - strand, within Sama_2433at 2927.814 kb on + strand, within Sama_2433at 2927.929 kb on - strand, within Sama_2433at 2927.929 kb on - strand, within Sama_2433at 2928.013 kb on + strand, within Sama_2433at 2928.014 kb on - strand, within Sama_2433at 2928.019 kb on - strand, within Sama_2433at 2928.137 kb on + strandat 2928.138 kb on - strandat 2928.142 kb on - strandat 2928.209 kb on + strandat 2928.210 kb on - strandat 2928.210 kb on - strandat 2928.210 kb on - strandat 2928.212 kb on + strandat 2928.213 kb on - strandat 2928.224 kb on + strandat 2928.224 kb on + strandat 2928.224 kb on + strandat 2928.225 kb on - strandat 2928.225 kb on - strandat 2928.225 kb on - strandat 2928.226 kb on + strandat 2928.227 kb on - strandat 2928.238 kb on + strandat 2928.238 kb on + strandat 2928.238 kb on + strandat 2928.238 kb on + strandat 2928.238 kb on + strandat 2928.238 kb on + strandat 2928.238 kb on + strandat 2928.239 kb on - strandat 2928.239 kb on - strandat 2928.239 kb on - strandat 2928.239 kb on - strandat 2928.239 kb on - strandat 2928.239 kb on - strandat 2928.239 kb on - strandat 2928.239 kb on - strandat 2928.239 kb on - strandat 2928.239 kb on - strandat 2928.258 kb on + strandat 2928.268 kb on + strandat 2928.269 kb on - strandat 2928.350 kb on + strandat 2928.350 kb on + strandat 2928.351 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate
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2,925,905 - Sama_2431 0.81 -0.8
2,926,243 - +0.7
2,926,243 - -0.7
2,926,243 - +0.6
2,926,244 + -0.7
2,926,244 + +2.2
2,926,245 - -0.4
2,926,313 + +1.1
2,926,313 + +0.4
2,926,314 - -0.3
2,926,314 - -0.4
2,926,341 + -1.7
2,926,376 + -0.8
2,926,377 - -0.8
2,926,377 - -0.7
2,926,418 - -0.1
2,926,421 + +1.1
2,926,422 - +0.1
2,926,422 - +0.2
2,926,422 - +0.9
2,926,422 - +1.3
2,926,443 + +0.7
2,926,443 + +2.4
2,926,444 - -0.5
2,926,444 - -0.4
2,926,444 - +0.1
2,926,444 - +0.9
2,926,541 + motB Sama_2432 0.13 +1.3
2,926,596 + motB Sama_2432 0.19 +1.0
2,926,655 - motB Sama_2432 0.25 +2.5
2,926,655 - motB Sama_2432 0.25 +3.2
2,926,701 - motB Sama_2432 0.30 +2.4
2,926,701 - motB Sama_2432 0.30 +2.3
2,926,723 - motB Sama_2432 0.33 +3.1
2,926,723 - motB Sama_2432 0.33 +2.2
2,926,723 - motB Sama_2432 0.33 +2.7
2,926,814 + motB Sama_2432 0.42 +3.1
2,926,814 + motB Sama_2432 0.42 +4.4
2,926,815 - motB Sama_2432 0.42 +2.6
2,926,908 - motB Sama_2432 0.52 +1.0
2,926,908 - motB Sama_2432 0.52 +2.5
2,926,908 - motB Sama_2432 0.52 +2.3
2,926,908 - motB Sama_2432 0.52 +3.7
2,926,908 - motB Sama_2432 0.52 +2.6
2,927,156 + motB Sama_2432 0.79 +1.6
2,927,174 + motB Sama_2432 0.81 +4.8
2,927,174 + motB Sama_2432 0.81 +2.6
2,927,175 - motB Sama_2432 0.81 +1.4
2,927,175 - motB Sama_2432 0.81 +2.6
2,927,175 - motB Sama_2432 0.81 +2.9
2,927,175 - motB Sama_2432 0.81 +1.9
2,927,194 + motB Sama_2432 0.83 +0.7
2,927,195 - motB Sama_2432 0.83 +1.4
2,927,195 - motB Sama_2432 0.83 +0.5
2,927,195 - motB Sama_2432 0.83 +2.6
2,927,202 - motB Sama_2432 0.84 +3.4
2,927,202 - motB Sama_2432 0.84 +3.6
2,927,202 - motB Sama_2432 0.84 +2.1
2,927,354 + +2.2
2,927,380 + +2.2
2,927,475 + Sama_2433 0.15 +3.4
2,927,481 + Sama_2433 0.16 -0.3
2,927,505 + Sama_2433 0.19 +2.7
2,927,505 + Sama_2433 0.19 -0.1
2,927,505 + Sama_2433 0.19 +2.2
2,927,521 - Sama_2433 0.21 +1.5
2,927,556 + Sama_2433 0.26 +1.3
2,927,556 + Sama_2433 0.26 +3.2
2,927,557 - Sama_2433 0.26 +0.5
2,927,557 - Sama_2433 0.26 +2.8
2,927,565 - Sama_2433 0.27 +2.1
2,927,565 - Sama_2433 0.27 +2.7
2,927,576 - Sama_2433 0.28 +2.4
2,927,655 + Sama_2433 0.39 +3.0
2,927,703 + Sama_2433 0.45 +1.5
2,927,703 + Sama_2433 0.45 +1.5
2,927,703 + Sama_2433 0.45 +2.0
2,927,704 - Sama_2433 0.45 +2.7
2,927,704 - Sama_2433 0.45 +2.2
2,927,707 + Sama_2433 0.45 -0.7
2,927,707 + Sama_2433 0.45 +1.9
2,927,707 + Sama_2433 0.45 +2.5
2,927,707 + Sama_2433 0.45 +2.5
2,927,708 - Sama_2433 0.45 +1.8
2,927,708 - Sama_2433 0.45 +1.8
2,927,708 - Sama_2433 0.45 +2.3
2,927,708 - Sama_2433 0.45 +1.9
2,927,708 - Sama_2433 0.45 +2.0
2,927,708 - Sama_2433 0.45 +0.3
2,927,708 - Sama_2433 0.45 +1.9
2,927,708 - Sama_2433 0.45 +2.6
2,927,743 - Sama_2433 0.50 +2.9
2,927,814 + Sama_2433 0.59 +2.4
2,927,929 - Sama_2433 0.74 +2.5
2,927,929 - Sama_2433 0.74 +2.8
2,928,013 + Sama_2433 0.85 +2.4
2,928,014 - Sama_2433 0.85 +2.0
2,928,019 - Sama_2433 0.86 +2.2
2,928,137 + +2.2
2,928,138 - +1.9
2,928,142 - -0.9
2,928,209 + +0.7
2,928,210 - -0.7
2,928,210 - -0.5
2,928,210 - +0.6
2,928,212 + +0.6
2,928,213 - -0.3
2,928,224 + -0.9
2,928,224 + +1.2
2,928,224 + +1.4
2,928,225 - +0.1
2,928,225 - +0.8
2,928,225 - -0.4
2,928,226 + -1.1
2,928,227 - +0.3
2,928,238 + +1.2
2,928,238 + +0.7
2,928,238 + -1.4
2,928,238 + +0.6
2,928,238 + +2.6
2,928,238 + +0.9
2,928,238 + +1.0
2,928,239 - +0.9
2,928,239 - +0.4
2,928,239 - -0.7
2,928,239 - +0.8
2,928,239 - +0.5
2,928,239 - -1.0
2,928,239 - +2.2
2,928,239 - -0.3
2,928,239 - +0.5
2,928,239 - +1.4
2,928,258 + +1.1
2,928,268 + +0.7
2,928,269 - +0.7
2,928,350 + -0.0
2,928,350 + -0.4
2,928,351 - -1.2

Or see this region's nucleotide sequence