Strain Fitness in Shewanella amazonensis SB2B around Sama_2291

Experiment: D,L-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfliM and fliL are separated by 38 nucleotidesfliL and Sama_2292 are separated by 85 nucleotides Sama_2290: fliM - flagellar motor switch protein FliM (RefSeq), at 2,754,749 to 2,755,777 fliM Sama_2291: fliL - flagellar basal body-associated protein FliL (RefSeq), at 2,755,816 to 2,756,343 fliL Sama_2292: Sama_2292 - flagellar hook-length control protein FliK (RefSeq), at 2,756,429 to 2,758,210 _2292 Position (kb) 2755 2756 2757Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2754.840 kb on - strandat 2754.886 kb on - strand, within fliMat 2754.918 kb on + strand, within fliMat 2754.918 kb on + strand, within fliMat 2754.919 kb on - strand, within fliMat 2754.981 kb on - strand, within fliMat 2755.040 kb on - strand, within fliMat 2755.040 kb on - strand, within fliMat 2755.076 kb on - strand, within fliMat 2755.129 kb on - strand, within fliMat 2755.196 kb on + strand, within fliMat 2755.205 kb on - strand, within fliMat 2755.291 kb on + strand, within fliMat 2755.292 kb on - strand, within fliMat 2755.294 kb on - strand, within fliMat 2755.414 kb on + strand, within fliMat 2755.414 kb on + strand, within fliMat 2755.442 kb on - strand, within fliMat 2755.477 kb on + strand, within fliMat 2755.505 kb on - strand, within fliMat 2755.512 kb on + strand, within fliMat 2755.513 kb on - strand, within fliMat 2755.513 kb on - strand, within fliMat 2755.513 kb on - strand, within fliMat 2755.544 kb on - strand, within fliMat 2755.573 kb on + strand, within fliMat 2755.586 kb on + strand, within fliMat 2755.587 kb on - strand, within fliMat 2755.587 kb on - strand, within fliMat 2755.587 kb on - strand, within fliMat 2755.587 kb on - strand, within fliMat 2755.762 kb on + strandat 2755.766 kb on + strandat 2755.766 kb on + strandat 2755.766 kb on - strandat 2755.800 kb on - strandat 2755.805 kb on + strandat 2755.806 kb on - strandat 2755.806 kb on - strandat 2755.806 kb on - strandat 2755.818 kb on - strandat 2755.818 kb on - strandat 2755.885 kb on - strand, within fliLat 2755.885 kb on - strand, within fliLat 2755.885 kb on - strand, within fliLat 2755.888 kb on - strand, within fliLat 2755.892 kb on - strand, within fliLat 2755.892 kb on - strand, within fliLat 2755.892 kb on - strand, within fliLat 2755.916 kb on - strand, within fliLat 2755.916 kb on - strand, within fliLat 2755.916 kb on - strand, within fliLat 2756.014 kb on - strand, within fliLat 2756.014 kb on - strand, within fliLat 2756.124 kb on - strand, within fliLat 2756.124 kb on - strand, within fliLat 2756.124 kb on - strand, within fliLat 2756.249 kb on - strand, within fliLat 2756.293 kb on - strandat 2756.293 kb on - strandat 2756.293 kb on - strandat 2756.293 kb on - strandat 2756.311 kb on - strandat 2756.324 kb on - strandat 2756.324 kb on - strandat 2756.404 kb on - strandat 2756.404 kb on - strandat 2756.404 kb on - strandat 2756.404 kb on - strandat 2756.416 kb on - strandat 2756.418 kb on - strandat 2756.418 kb on - strandat 2756.418 kb on - strandat 2756.418 kb on - strandat 2756.418 kb on - strandat 2756.418 kb on - strandat 2756.423 kb on - strandat 2756.423 kb on - strandat 2756.431 kb on - strandat 2756.437 kb on - strandat 2756.437 kb on - strandat 2756.437 kb on - strandat 2756.437 kb on - strandat 2756.440 kb on - strandat 2756.440 kb on - strandat 2756.440 kb on - strandat 2756.445 kb on - strandat 2756.445 kb on - strandat 2756.445 kb on - strandat 2756.580 kb on - strandat 2756.652 kb on - strand, within Sama_2292at 2756.652 kb on - strand, within Sama_2292at 2756.708 kb on + strand, within Sama_2292at 2756.771 kb on + strand, within Sama_2292at 2756.771 kb on + strand, within Sama_2292at 2756.772 kb on - strand, within Sama_2292at 2756.794 kb on + strand, within Sama_2292at 2756.795 kb on - strand, within Sama_2292at 2756.803 kb on + strand, within Sama_2292at 2756.804 kb on - strand, within Sama_2292at 2756.867 kb on - strand, within Sama_2292at 2756.933 kb on - strand, within Sama_2292at 2756.951 kb on + strand, within Sama_2292at 2756.951 kb on + strand, within Sama_2292at 2756.952 kb on - strand, within Sama_2292at 2756.975 kb on + strand, within Sama_2292at 2756.975 kb on + strand, within Sama_2292at 2756.975 kb on + strand, within Sama_2292at 2756.975 kb on + strand, within Sama_2292at 2756.975 kb on + strand, within Sama_2292at 2756.976 kb on - strand, within Sama_2292at 2756.976 kb on - strand, within Sama_2292at 2756.976 kb on - strand, within Sama_2292at 2756.976 kb on - strand, within Sama_2292at 2756.995 kb on + strand, within Sama_2292at 2757.114 kb on - strand, within Sama_2292at 2757.160 kb on + strand, within Sama_2292at 2757.160 kb on + strand, within Sama_2292at 2757.215 kb on - strand, within Sama_2292at 2757.317 kb on - strand, within Sama_2292at 2757.329 kb on + strand, within Sama_2292at 2757.330 kb on - strand, within Sama_2292at 2757.330 kb on - strand, within Sama_2292

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate
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2,754,840 - -1.4
2,754,886 - fliM Sama_2290 0.13 -2.4
2,754,918 + fliM Sama_2290 0.16 +0.2
2,754,918 + fliM Sama_2290 0.16 +0.4
2,754,919 - fliM Sama_2290 0.17 -1.1
2,754,981 - fliM Sama_2290 0.23 -0.7
2,755,040 - fliM Sama_2290 0.28 -1.2
2,755,040 - fliM Sama_2290 0.28 +0.0
2,755,076 - fliM Sama_2290 0.32 +1.8
2,755,129 - fliM Sama_2290 0.37 -1.5
2,755,196 + fliM Sama_2290 0.43 +4.0
2,755,205 - fliM Sama_2290 0.44 -0.9
2,755,291 + fliM Sama_2290 0.53 +1.4
2,755,292 - fliM Sama_2290 0.53 -1.6
2,755,294 - fliM Sama_2290 0.53 -2.2
2,755,414 + fliM Sama_2290 0.65 +1.2
2,755,414 + fliM Sama_2290 0.65 +0.5
2,755,442 - fliM Sama_2290 0.67 -1.8
2,755,477 + fliM Sama_2290 0.71 -0.1
2,755,505 - fliM Sama_2290 0.73 -2.0
2,755,512 + fliM Sama_2290 0.74 +1.2
2,755,513 - fliM Sama_2290 0.74 -2.4
2,755,513 - fliM Sama_2290 0.74 -1.8
2,755,513 - fliM Sama_2290 0.74 -0.1
2,755,544 - fliM Sama_2290 0.77 -0.8
2,755,573 + fliM Sama_2290 0.80 +0.4
2,755,586 + fliM Sama_2290 0.81 +2.0
2,755,587 - fliM Sama_2290 0.81 -2.0
2,755,587 - fliM Sama_2290 0.81 -2.3
2,755,587 - fliM Sama_2290 0.81 -0.0
2,755,587 - fliM Sama_2290 0.81 -0.2
2,755,762 + +2.4
2,755,766 + +1.5
2,755,766 + +0.6
2,755,766 - -2.4
2,755,800 - +1.2
2,755,805 + +1.2
2,755,806 - -0.6
2,755,806 - -1.2
2,755,806 - +0.8
2,755,818 - -1.5
2,755,818 - -2.2
2,755,885 - fliL Sama_2291 0.13 +2.1
2,755,885 - fliL Sama_2291 0.13 +0.3
2,755,885 - fliL Sama_2291 0.13 +1.4
2,755,888 - fliL Sama_2291 0.14 +0.6
2,755,892 - fliL Sama_2291 0.14 +1.6
2,755,892 - fliL Sama_2291 0.14 +1.1
2,755,892 - fliL Sama_2291 0.14 +1.3
2,755,916 - fliL Sama_2291 0.19 +1.4
2,755,916 - fliL Sama_2291 0.19 +1.6
2,755,916 - fliL Sama_2291 0.19 +1.2
2,756,014 - fliL Sama_2291 0.38 +0.7
2,756,014 - fliL Sama_2291 0.38 +0.8
2,756,124 - fliL Sama_2291 0.58 +1.8
2,756,124 - fliL Sama_2291 0.58 +1.0
2,756,124 - fliL Sama_2291 0.58 +2.0
2,756,249 - fliL Sama_2291 0.82 +1.8
2,756,293 - +0.8
2,756,293 - -2.0
2,756,293 - -0.6
2,756,293 - +1.0
2,756,311 - -0.5
2,756,324 - +1.9
2,756,324 - +0.8
2,756,404 - -0.5
2,756,404 - -0.1
2,756,404 - -0.5
2,756,404 - -0.0
2,756,416 - -0.6
2,756,418 - +1.2
2,756,418 - +0.5
2,756,418 - -1.2
2,756,418 - -0.2
2,756,418 - +0.4
2,756,418 - +0.7
2,756,423 - +1.4
2,756,423 - -2.9
2,756,431 - +0.2
2,756,437 - +2.0
2,756,437 - +0.2
2,756,437 - +1.3
2,756,437 - +3.4
2,756,440 - -0.5
2,756,440 - +2.9
2,756,440 - +0.3
2,756,445 - +1.6
2,756,445 - +2.0
2,756,445 - +1.7
2,756,580 - +2.0
2,756,652 - Sama_2292 0.13 +0.9
2,756,652 - Sama_2292 0.13 +1.5
2,756,708 + Sama_2292 0.16 +1.0
2,756,771 + Sama_2292 0.19 +1.6
2,756,771 + Sama_2292 0.19 +2.4
2,756,772 - Sama_2292 0.19 +1.4
2,756,794 + Sama_2292 0.20 +1.5
2,756,795 - Sama_2292 0.21 +0.8
2,756,803 + Sama_2292 0.21 +1.8
2,756,804 - Sama_2292 0.21 +1.8
2,756,867 - Sama_2292 0.25 +3.5
2,756,933 - Sama_2292 0.28 +1.8
2,756,951 + Sama_2292 0.29 +0.3
2,756,951 + Sama_2292 0.29 +1.0
2,756,952 - Sama_2292 0.29 +0.8
2,756,975 + Sama_2292 0.31 +1.9
2,756,975 + Sama_2292 0.31 +2.2
2,756,975 + Sama_2292 0.31 +2.1
2,756,975 + Sama_2292 0.31 -0.4
2,756,975 + Sama_2292 0.31 +0.2
2,756,976 - Sama_2292 0.31 +0.4
2,756,976 - Sama_2292 0.31 +1.2
2,756,976 - Sama_2292 0.31 +0.8
2,756,976 - Sama_2292 0.31 +2.1
2,756,995 + Sama_2292 0.32 -0.1
2,757,114 - Sama_2292 0.38 +1.6
2,757,160 + Sama_2292 0.41 +3.0
2,757,160 + Sama_2292 0.41 +2.5
2,757,215 - Sama_2292 0.44 +0.7
2,757,317 - Sama_2292 0.50 +1.6
2,757,329 + Sama_2292 0.51 +2.8
2,757,330 - Sama_2292 0.51 +0.8
2,757,330 - Sama_2292 0.51 +1.7

Or see this region's nucleotide sequence