Experiment: D,L-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fliM and fliL are separated by 38 nucleotides fliL and Sama_2292 are separated by 85 nucleotides
Sama_2290: fliM - flagellar motor switch protein FliM (RefSeq), at 2,754,749 to 2,755,777
fliM
Sama_2291: fliL - flagellar basal body-associated protein FliL (RefSeq), at 2,755,816 to 2,756,343
fliL
Sama_2292: Sama_2292 - flagellar hook-length control protein FliK (RefSeq), at 2,756,429 to 2,758,210
_2292
Position (kb)
2755
2756
2757 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 2754.840 kb on - strand at 2754.886 kb on - strand, within fliM at 2754.918 kb on + strand, within fliM at 2754.918 kb on + strand, within fliM at 2754.919 kb on - strand, within fliM at 2754.981 kb on - strand, within fliM at 2755.040 kb on - strand, within fliM at 2755.040 kb on - strand, within fliM at 2755.076 kb on - strand, within fliM at 2755.129 kb on - strand, within fliM at 2755.196 kb on + strand, within fliM at 2755.205 kb on - strand, within fliM at 2755.291 kb on + strand, within fliM at 2755.292 kb on - strand, within fliM at 2755.294 kb on - strand, within fliM at 2755.414 kb on + strand, within fliM at 2755.414 kb on + strand, within fliM at 2755.442 kb on - strand, within fliM at 2755.477 kb on + strand, within fliM at 2755.505 kb on - strand, within fliM at 2755.512 kb on + strand, within fliM at 2755.513 kb on - strand, within fliM at 2755.513 kb on - strand, within fliM at 2755.513 kb on - strand, within fliM at 2755.544 kb on - strand, within fliM at 2755.573 kb on + strand, within fliM at 2755.586 kb on + strand, within fliM at 2755.587 kb on - strand, within fliM at 2755.587 kb on - strand, within fliM at 2755.587 kb on - strand, within fliM at 2755.587 kb on - strand, within fliM at 2755.762 kb on + strand at 2755.766 kb on + strand at 2755.766 kb on + strand at 2755.766 kb on - strand at 2755.800 kb on - strand at 2755.805 kb on + strand at 2755.806 kb on - strand at 2755.806 kb on - strand at 2755.806 kb on - strand at 2755.818 kb on - strand at 2755.818 kb on - strand at 2755.885 kb on - strand, within fliL at 2755.885 kb on - strand, within fliL at 2755.885 kb on - strand, within fliL at 2755.888 kb on - strand, within fliL at 2755.892 kb on - strand, within fliL at 2755.892 kb on - strand, within fliL at 2755.892 kb on - strand, within fliL at 2755.916 kb on - strand, within fliL at 2755.916 kb on - strand, within fliL at 2755.916 kb on - strand, within fliL at 2756.014 kb on - strand, within fliL at 2756.014 kb on - strand, within fliL at 2756.124 kb on - strand, within fliL at 2756.124 kb on - strand, within fliL at 2756.124 kb on - strand, within fliL at 2756.249 kb on - strand, within fliL at 2756.293 kb on - strand at 2756.293 kb on - strand at 2756.293 kb on - strand at 2756.293 kb on - strand at 2756.311 kb on - strand at 2756.324 kb on - strand at 2756.324 kb on - strand at 2756.404 kb on - strand at 2756.404 kb on - strand at 2756.404 kb on - strand at 2756.404 kb on - strand at 2756.416 kb on - strand at 2756.418 kb on - strand at 2756.418 kb on - strand at 2756.418 kb on - strand at 2756.418 kb on - strand at 2756.418 kb on - strand at 2756.418 kb on - strand at 2756.423 kb on - strand at 2756.423 kb on - strand at 2756.431 kb on - strand at 2756.437 kb on - strand at 2756.437 kb on - strand at 2756.437 kb on - strand at 2756.437 kb on - strand at 2756.440 kb on - strand at 2756.440 kb on - strand at 2756.440 kb on - strand at 2756.445 kb on - strand at 2756.445 kb on - strand at 2756.445 kb on - strand at 2756.580 kb on - strand at 2756.652 kb on - strand, within Sama_2292 at 2756.652 kb on - strand, within Sama_2292 at 2756.708 kb on + strand, within Sama_2292 at 2756.771 kb on + strand, within Sama_2292 at 2756.771 kb on + strand, within Sama_2292 at 2756.772 kb on - strand, within Sama_2292 at 2756.794 kb on + strand, within Sama_2292 at 2756.795 kb on - strand, within Sama_2292 at 2756.803 kb on + strand, within Sama_2292 at 2756.804 kb on - strand, within Sama_2292 at 2756.867 kb on - strand, within Sama_2292 at 2756.933 kb on - strand, within Sama_2292 at 2756.951 kb on + strand, within Sama_2292 at 2756.951 kb on + strand, within Sama_2292 at 2756.952 kb on - strand, within Sama_2292 at 2756.975 kb on + strand, within Sama_2292 at 2756.975 kb on + strand, within Sama_2292 at 2756.975 kb on + strand, within Sama_2292 at 2756.975 kb on + strand, within Sama_2292 at 2756.975 kb on + strand, within Sama_2292 at 2756.976 kb on - strand, within Sama_2292 at 2756.976 kb on - strand, within Sama_2292 at 2756.976 kb on - strand, within Sama_2292 at 2756.976 kb on - strand, within Sama_2292 at 2756.995 kb on + strand, within Sama_2292 at 2757.114 kb on - strand, within Sama_2292 at 2757.160 kb on + strand, within Sama_2292 at 2757.160 kb on + strand, within Sama_2292 at 2757.215 kb on - strand, within Sama_2292 at 2757.317 kb on - strand, within Sama_2292 at 2757.329 kb on + strand, within Sama_2292 at 2757.330 kb on - strand, within Sama_2292 at 2757.330 kb on - strand, within Sama_2292
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate remove 2,754,840 - -1.4 2,754,886 - fliM Sama_2290 0.13 -2.4 2,754,918 + fliM Sama_2290 0.16 +0.2 2,754,918 + fliM Sama_2290 0.16 +0.4 2,754,919 - fliM Sama_2290 0.17 -1.1 2,754,981 - fliM Sama_2290 0.23 -0.7 2,755,040 - fliM Sama_2290 0.28 -1.2 2,755,040 - fliM Sama_2290 0.28 +0.0 2,755,076 - fliM Sama_2290 0.32 +1.8 2,755,129 - fliM Sama_2290 0.37 -1.5 2,755,196 + fliM Sama_2290 0.43 +4.0 2,755,205 - fliM Sama_2290 0.44 -0.9 2,755,291 + fliM Sama_2290 0.53 +1.4 2,755,292 - fliM Sama_2290 0.53 -1.6 2,755,294 - fliM Sama_2290 0.53 -2.2 2,755,414 + fliM Sama_2290 0.65 +1.2 2,755,414 + fliM Sama_2290 0.65 +0.5 2,755,442 - fliM Sama_2290 0.67 -1.8 2,755,477 + fliM Sama_2290 0.71 -0.1 2,755,505 - fliM Sama_2290 0.73 -2.0 2,755,512 + fliM Sama_2290 0.74 +1.2 2,755,513 - fliM Sama_2290 0.74 -2.4 2,755,513 - fliM Sama_2290 0.74 -1.8 2,755,513 - fliM Sama_2290 0.74 -0.1 2,755,544 - fliM Sama_2290 0.77 -0.8 2,755,573 + fliM Sama_2290 0.80 +0.4 2,755,586 + fliM Sama_2290 0.81 +2.0 2,755,587 - fliM Sama_2290 0.81 -2.0 2,755,587 - fliM Sama_2290 0.81 -2.3 2,755,587 - fliM Sama_2290 0.81 -0.0 2,755,587 - fliM Sama_2290 0.81 -0.2 2,755,762 + +2.4 2,755,766 + +1.5 2,755,766 + +0.6 2,755,766 - -2.4 2,755,800 - +1.2 2,755,805 + +1.2 2,755,806 - -0.6 2,755,806 - -1.2 2,755,806 - +0.8 2,755,818 - -1.5 2,755,818 - -2.2 2,755,885 - fliL Sama_2291 0.13 +2.1 2,755,885 - fliL Sama_2291 0.13 +0.3 2,755,885 - fliL Sama_2291 0.13 +1.4 2,755,888 - fliL Sama_2291 0.14 +0.6 2,755,892 - fliL Sama_2291 0.14 +1.6 2,755,892 - fliL Sama_2291 0.14 +1.1 2,755,892 - fliL Sama_2291 0.14 +1.3 2,755,916 - fliL Sama_2291 0.19 +1.4 2,755,916 - fliL Sama_2291 0.19 +1.6 2,755,916 - fliL Sama_2291 0.19 +1.2 2,756,014 - fliL Sama_2291 0.38 +0.7 2,756,014 - fliL Sama_2291 0.38 +0.8 2,756,124 - fliL Sama_2291 0.58 +1.8 2,756,124 - fliL Sama_2291 0.58 +1.0 2,756,124 - fliL Sama_2291 0.58 +2.0 2,756,249 - fliL Sama_2291 0.82 +1.8 2,756,293 - +0.8 2,756,293 - -2.0 2,756,293 - -0.6 2,756,293 - +1.0 2,756,311 - -0.5 2,756,324 - +1.9 2,756,324 - +0.8 2,756,404 - -0.5 2,756,404 - -0.1 2,756,404 - -0.5 2,756,404 - -0.0 2,756,416 - -0.6 2,756,418 - +1.2 2,756,418 - +0.5 2,756,418 - -1.2 2,756,418 - -0.2 2,756,418 - +0.4 2,756,418 - +0.7 2,756,423 - +1.4 2,756,423 - -2.9 2,756,431 - +0.2 2,756,437 - +2.0 2,756,437 - +0.2 2,756,437 - +1.3 2,756,437 - +3.4 2,756,440 - -0.5 2,756,440 - +2.9 2,756,440 - +0.3 2,756,445 - +1.6 2,756,445 - +2.0 2,756,445 - +1.7 2,756,580 - +2.0 2,756,652 - Sama_2292 0.13 +0.9 2,756,652 - Sama_2292 0.13 +1.5 2,756,708 + Sama_2292 0.16 +1.0 2,756,771 + Sama_2292 0.19 +1.6 2,756,771 + Sama_2292 0.19 +2.4 2,756,772 - Sama_2292 0.19 +1.4 2,756,794 + Sama_2292 0.20 +1.5 2,756,795 - Sama_2292 0.21 +0.8 2,756,803 + Sama_2292 0.21 +1.8 2,756,804 - Sama_2292 0.21 +1.8 2,756,867 - Sama_2292 0.25 +3.5 2,756,933 - Sama_2292 0.28 +1.8 2,756,951 + Sama_2292 0.29 +0.3 2,756,951 + Sama_2292 0.29 +1.0 2,756,952 - Sama_2292 0.29 +0.8 2,756,975 + Sama_2292 0.31 +1.9 2,756,975 + Sama_2292 0.31 +2.2 2,756,975 + Sama_2292 0.31 +2.1 2,756,975 + Sama_2292 0.31 -0.4 2,756,975 + Sama_2292 0.31 +0.2 2,756,976 - Sama_2292 0.31 +0.4 2,756,976 - Sama_2292 0.31 +1.2 2,756,976 - Sama_2292 0.31 +0.8 2,756,976 - Sama_2292 0.31 +2.1 2,756,995 + Sama_2292 0.32 -0.1 2,757,114 - Sama_2292 0.38 +1.6 2,757,160 + Sama_2292 0.41 +3.0 2,757,160 + Sama_2292 0.41 +2.5 2,757,215 - Sama_2292 0.44 +0.7 2,757,317 - Sama_2292 0.50 +1.6 2,757,329 + Sama_2292 0.51 +2.8 2,757,330 - Sama_2292 0.51 +0.8 2,757,330 - Sama_2292 0.51 +1.7
Or see this region's nucleotide sequence