Strain Fitness in Shewanella amazonensis SB2B around Sama_1248

Experiment: D,L-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_1246 and Sama_1247 are separated by 9 nucleotidesSama_1247 and Sama_1248 overlap by 4 nucleotidesSama_1248 and dinG are separated by 9 nucleotides Sama_1246: Sama_1246 - hypothetical protein (RefSeq), at 1,529,335 to 1,530,039 _1246 Sama_1247: Sama_1247 - primosomal replication protein N'', putative (RefSeq), at 1,530,049 to 1,530,711 _1247 Sama_1248: Sama_1248 - hypothetical protein (RefSeq), at 1,530,708 to 1,531,481 _1248 Sama_1249: dinG - ATP-dependent DNA helicase DinG (RefSeq), at 1,531,491 to 1,533,566 dinG Position (kb) 1530 1531 1532Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1529.754 kb on - strand, within Sama_1246at 1529.754 kb on - strand, within Sama_1246at 1529.754 kb on - strand, within Sama_1246at 1529.759 kb on + strand, within Sama_1246at 1529.759 kb on + strand, within Sama_1246at 1529.760 kb on - strand, within Sama_1246at 1529.760 kb on - strand, within Sama_1246at 1529.760 kb on - strand, within Sama_1246at 1529.917 kb on - strand, within Sama_1246at 1529.946 kb on - strand, within Sama_1246at 1529.946 kb on - strand, within Sama_1246at 1529.958 kb on + strand, within Sama_1246at 1529.958 kb on + strand, within Sama_1246at 1529.959 kb on - strand, within Sama_1246at 1529.959 kb on - strand, within Sama_1246at 1530.104 kb on + strandat 1530.105 kb on - strandat 1530.199 kb on + strand, within Sama_1247at 1530.255 kb on + strand, within Sama_1247at 1530.256 kb on - strand, within Sama_1247at 1530.256 kb on - strand, within Sama_1247at 1530.259 kb on + strand, within Sama_1247at 1530.269 kb on + strand, within Sama_1247at 1530.270 kb on - strand, within Sama_1247at 1530.352 kb on + strand, within Sama_1247at 1530.353 kb on - strand, within Sama_1247at 1530.353 kb on - strand, within Sama_1247at 1530.353 kb on - strand, within Sama_1247at 1530.354 kb on + strand, within Sama_1247at 1530.354 kb on + strand, within Sama_1247at 1530.354 kb on + strand, within Sama_1247at 1530.355 kb on - strand, within Sama_1247at 1530.400 kb on + strand, within Sama_1247at 1530.427 kb on - strand, within Sama_1247at 1530.538 kb on + strand, within Sama_1247at 1530.538 kb on + strand, within Sama_1247at 1530.539 kb on - strand, within Sama_1247at 1530.539 kb on - strand, within Sama_1247at 1530.585 kb on + strand, within Sama_1247at 1530.649 kb on + strandat 1530.650 kb on - strandat 1530.694 kb on + strandat 1530.695 kb on - strandat 1530.695 kb on - strandat 1530.704 kb on + strandat 1530.705 kb on - strandat 1530.705 kb on - strandat 1530.761 kb on + strandat 1530.762 kb on - strandat 1530.884 kb on + strand, within Sama_1248at 1530.885 kb on - strand, within Sama_1248at 1530.894 kb on + strand, within Sama_1248at 1530.895 kb on - strand, within Sama_1248at 1530.912 kb on - strand, within Sama_1248at 1531.025 kb on - strand, within Sama_1248at 1531.129 kb on + strand, within Sama_1248at 1531.129 kb on + strand, within Sama_1248at 1531.129 kb on + strand, within Sama_1248at 1531.129 kb on + strand, within Sama_1248at 1531.130 kb on - strand, within Sama_1248at 1531.188 kb on - strand, within Sama_1248at 1531.223 kb on + strand, within Sama_1248at 1531.223 kb on + strand, within Sama_1248at 1531.266 kb on + strand, within Sama_1248at 1531.266 kb on + strand, within Sama_1248at 1531.267 kb on - strand, within Sama_1248at 1531.267 kb on - strand, within Sama_1248at 1531.267 kb on - strand, within Sama_1248at 1531.267 kb on - strand, within Sama_1248at 1531.267 kb on - strand, within Sama_1248at 1531.267 kb on - strand, within Sama_1248at 1531.267 kb on - strand, within Sama_1248at 1531.282 kb on + strand, within Sama_1248at 1531.282 kb on + strand, within Sama_1248at 1531.282 kb on + strand, within Sama_1248at 1531.283 kb on - strand, within Sama_1248at 1531.283 kb on - strand, within Sama_1248at 1531.283 kb on - strand, within Sama_1248at 1531.283 kb on - strand, within Sama_1248at 1531.283 kb on - strand, within Sama_1248at 1531.326 kb on - strand, within Sama_1248at 1531.332 kb on - strand, within Sama_1248at 1531.354 kb on - strand, within Sama_1248at 1531.416 kb on - strandat 1531.473 kb on + strandat 1531.492 kb on + strandat 1531.492 kb on + strandat 1531.544 kb on - strandat 1531.544 kb on - strandat 1531.544 kb on - strandat 1531.588 kb on + strandat 1531.588 kb on + strandat 1531.589 kb on - strandat 1531.689 kb on + strandat 1531.689 kb on + strandat 1531.689 kb on + strandat 1531.689 kb on + strandat 1531.689 kb on + strandat 1531.690 kb on - strandat 1531.690 kb on - strandat 1531.690 kb on - strandat 1531.694 kb on - strandat 1531.694 kb on - strandat 1531.768 kb on + strand, within dinGat 1531.830 kb on - strand, within dinGat 1531.850 kb on + strand, within dinGat 1531.851 kb on - strand, within dinGat 1531.851 kb on - strand, within dinGat 1531.851 kb on - strand, within dinGat 1531.892 kb on + strand, within dinGat 1531.893 kb on - strand, within dinGat 1531.893 kb on - strand, within dinGat 1531.893 kb on - strand, within dinGat 1531.992 kb on - strand, within dinGat 1532.026 kb on + strand, within dinGat 1532.026 kb on + strand, within dinGat 1532.027 kb on - strand, within dinGat 1532.027 kb on - strand, within dinGat 1532.027 kb on - strand, within dinGat 1532.065 kb on + strand, within dinGat 1532.066 kb on - strand, within dinGat 1532.066 kb on - strand, within dinGat 1532.113 kb on + strand, within dinGat 1532.142 kb on + strand, within dinGat 1532.142 kb on + strand, within dinGat 1532.158 kb on + strand, within dinGat 1532.241 kb on - strand, within dinGat 1532.276 kb on - strand, within dinGat 1532.288 kb on + strand, within dinGat 1532.288 kb on + strand, within dinGat 1532.288 kb on + strand, within dinGat 1532.337 kb on - strand, within dinGat 1532.396 kb on + strand, within dinGat 1532.396 kb on + strand, within dinGat 1532.396 kb on + strand, within dinGat 1532.397 kb on - strand, within dinG

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate
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1,529,754 - Sama_1246 0.59 -0.2
1,529,754 - Sama_1246 0.59 -0.7
1,529,754 - Sama_1246 0.59 -2.1
1,529,759 + Sama_1246 0.60 +0.0
1,529,759 + Sama_1246 0.60 +0.6
1,529,760 - Sama_1246 0.60 -0.4
1,529,760 - Sama_1246 0.60 -0.3
1,529,760 - Sama_1246 0.60 -0.1
1,529,917 - Sama_1246 0.83 -0.1
1,529,946 - Sama_1246 0.87 +0.7
1,529,946 - Sama_1246 0.87 +1.2
1,529,958 + Sama_1246 0.88 -0.1
1,529,958 + Sama_1246 0.88 +0.6
1,529,959 - Sama_1246 0.89 -0.7
1,529,959 - Sama_1246 0.89 +0.9
1,530,104 + +1.4
1,530,105 - +0.9
1,530,199 + Sama_1247 0.23 +1.3
1,530,255 + Sama_1247 0.31 +1.0
1,530,256 - Sama_1247 0.31 +2.7
1,530,256 - Sama_1247 0.31 +0.6
1,530,259 + Sama_1247 0.32 +0.6
1,530,269 + Sama_1247 0.33 +0.1
1,530,270 - Sama_1247 0.33 +2.6
1,530,352 + Sama_1247 0.46 +1.4
1,530,353 - Sama_1247 0.46 +1.0
1,530,353 - Sama_1247 0.46 +1.2
1,530,353 - Sama_1247 0.46 +0.7
1,530,354 + Sama_1247 0.46 +2.5
1,530,354 + Sama_1247 0.46 +1.4
1,530,354 + Sama_1247 0.46 -0.9
1,530,355 - Sama_1247 0.46 +1.1
1,530,400 + Sama_1247 0.53 -0.1
1,530,427 - Sama_1247 0.57 +1.9
1,530,538 + Sama_1247 0.74 +0.9
1,530,538 + Sama_1247 0.74 +0.9
1,530,539 - Sama_1247 0.74 +0.4
1,530,539 - Sama_1247 0.74 -0.1
1,530,585 + Sama_1247 0.81 +1.4
1,530,649 + -0.1
1,530,650 - +1.4
1,530,694 + +0.2
1,530,695 - +1.3
1,530,695 - +1.1
1,530,704 + +0.8
1,530,705 - +0.4
1,530,705 - +1.8
1,530,761 + +0.1
1,530,762 - +1.5
1,530,884 + Sama_1248 0.23 +0.9
1,530,885 - Sama_1248 0.23 +1.9
1,530,894 + Sama_1248 0.24 +1.3
1,530,895 - Sama_1248 0.24 +2.4
1,530,912 - Sama_1248 0.26 +1.4
1,531,025 - Sama_1248 0.41 +2.0
1,531,129 + Sama_1248 0.54 +1.6
1,531,129 + Sama_1248 0.54 +1.6
1,531,129 + Sama_1248 0.54 +1.2
1,531,129 + Sama_1248 0.54 -0.3
1,531,130 - Sama_1248 0.55 +0.2
1,531,188 - Sama_1248 0.62 +1.1
1,531,223 + Sama_1248 0.67 +2.3
1,531,223 + Sama_1248 0.67 +1.4
1,531,266 + Sama_1248 0.72 +0.5
1,531,266 + Sama_1248 0.72 +2.5
1,531,267 - Sama_1248 0.72 +1.2
1,531,267 - Sama_1248 0.72 +0.9
1,531,267 - Sama_1248 0.72 +1.7
1,531,267 - Sama_1248 0.72 +1.5
1,531,267 - Sama_1248 0.72 +0.9
1,531,267 - Sama_1248 0.72 +1.6
1,531,267 - Sama_1248 0.72 +1.9
1,531,282 + Sama_1248 0.74 +1.4
1,531,282 + Sama_1248 0.74 +0.6
1,531,282 + Sama_1248 0.74 +1.5
1,531,283 - Sama_1248 0.74 +1.6
1,531,283 - Sama_1248 0.74 +0.3
1,531,283 - Sama_1248 0.74 +1.5
1,531,283 - Sama_1248 0.74 +0.0
1,531,283 - Sama_1248 0.74 -1.7
1,531,326 - Sama_1248 0.80 +1.5
1,531,332 - Sama_1248 0.81 +1.6
1,531,354 - Sama_1248 0.83 -0.5
1,531,416 - +1.0
1,531,473 + +1.3
1,531,492 + +1.8
1,531,492 + +0.9
1,531,544 - +0.1
1,531,544 - -0.2
1,531,544 - +0.1
1,531,588 + +1.5
1,531,588 + -0.2
1,531,589 - -0.4
1,531,689 + +0.0
1,531,689 + +0.6
1,531,689 + +0.3
1,531,689 + +0.6
1,531,689 + +0.5
1,531,690 - -2.8
1,531,690 - -1.2
1,531,690 - -1.7
1,531,694 - -1.1
1,531,694 - -0.4
1,531,768 + dinG Sama_1249 0.13 -0.3
1,531,830 - dinG Sama_1249 0.16 -0.7
1,531,850 + dinG Sama_1249 0.17 +0.2
1,531,851 - dinG Sama_1249 0.17 +0.8
1,531,851 - dinG Sama_1249 0.17 -0.7
1,531,851 - dinG Sama_1249 0.17 -1.1
1,531,892 + dinG Sama_1249 0.19 +0.6
1,531,893 - dinG Sama_1249 0.19 +0.3
1,531,893 - dinG Sama_1249 0.19 -1.1
1,531,893 - dinG Sama_1249 0.19 -0.7
1,531,992 - dinG Sama_1249 0.24 -2.6
1,532,026 + dinG Sama_1249 0.26 -1.3
1,532,026 + dinG Sama_1249 0.26 +0.1
1,532,027 - dinG Sama_1249 0.26 -3.1
1,532,027 - dinG Sama_1249 0.26 -0.4
1,532,027 - dinG Sama_1249 0.26 -0.6
1,532,065 + dinG Sama_1249 0.28 +0.4
1,532,066 - dinG Sama_1249 0.28 -0.5
1,532,066 - dinG Sama_1249 0.28 +0.4
1,532,113 + dinG Sama_1249 0.30 +0.1
1,532,142 + dinG Sama_1249 0.31 +1.6
1,532,142 + dinG Sama_1249 0.31 -1.6
1,532,158 + dinG Sama_1249 0.32 +2.0
1,532,241 - dinG Sama_1249 0.36 -1.1
1,532,276 - dinG Sama_1249 0.38 -1.3
1,532,288 + dinG Sama_1249 0.38 +0.8
1,532,288 + dinG Sama_1249 0.38 -0.7
1,532,288 + dinG Sama_1249 0.38 +0.7
1,532,337 - dinG Sama_1249 0.41 +0.7
1,532,396 + dinG Sama_1249 0.44 +1.2
1,532,396 + dinG Sama_1249 0.44 +1.9
1,532,396 + dinG Sama_1249 0.44 +0.9
1,532,397 - dinG Sama_1249 0.44 -0.3

Or see this region's nucleotide sequence