Experiment: D,L-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_1246 and Sama_1247 are separated by 9 nucleotides Sama_1247 and Sama_1248 overlap by 4 nucleotides Sama_1248 and dinG are separated by 9 nucleotides
Sama_1246: Sama_1246 - hypothetical protein (RefSeq), at 1,529,335 to 1,530,039
_1246
Sama_1247: Sama_1247 - primosomal replication protein N'', putative (RefSeq), at 1,530,049 to 1,530,711
_1247
Sama_1248: Sama_1248 - hypothetical protein (RefSeq), at 1,530,708 to 1,531,481
_1248
Sama_1249: dinG - ATP-dependent DNA helicase DinG (RefSeq), at 1,531,491 to 1,533,566
dinG
Position (kb)
1530
1531
1532 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1529.754 kb on - strand, within Sama_1246 at 1529.754 kb on - strand, within Sama_1246 at 1529.754 kb on - strand, within Sama_1246 at 1529.759 kb on + strand, within Sama_1246 at 1529.759 kb on + strand, within Sama_1246 at 1529.760 kb on - strand, within Sama_1246 at 1529.760 kb on - strand, within Sama_1246 at 1529.760 kb on - strand, within Sama_1246 at 1529.917 kb on - strand, within Sama_1246 at 1529.946 kb on - strand, within Sama_1246 at 1529.946 kb on - strand, within Sama_1246 at 1529.958 kb on + strand, within Sama_1246 at 1529.958 kb on + strand, within Sama_1246 at 1529.959 kb on - strand, within Sama_1246 at 1529.959 kb on - strand, within Sama_1246 at 1530.104 kb on + strand at 1530.105 kb on - strand at 1530.199 kb on + strand, within Sama_1247 at 1530.255 kb on + strand, within Sama_1247 at 1530.256 kb on - strand, within Sama_1247 at 1530.256 kb on - strand, within Sama_1247 at 1530.259 kb on + strand, within Sama_1247 at 1530.269 kb on + strand, within Sama_1247 at 1530.270 kb on - strand, within Sama_1247 at 1530.352 kb on + strand, within Sama_1247 at 1530.353 kb on - strand, within Sama_1247 at 1530.353 kb on - strand, within Sama_1247 at 1530.353 kb on - strand, within Sama_1247 at 1530.354 kb on + strand, within Sama_1247 at 1530.354 kb on + strand, within Sama_1247 at 1530.354 kb on + strand, within Sama_1247 at 1530.355 kb on - strand, within Sama_1247 at 1530.400 kb on + strand, within Sama_1247 at 1530.427 kb on - strand, within Sama_1247 at 1530.538 kb on + strand, within Sama_1247 at 1530.538 kb on + strand, within Sama_1247 at 1530.539 kb on - strand, within Sama_1247 at 1530.539 kb on - strand, within Sama_1247 at 1530.585 kb on + strand, within Sama_1247 at 1530.649 kb on + strand at 1530.650 kb on - strand at 1530.694 kb on + strand at 1530.695 kb on - strand at 1530.695 kb on - strand at 1530.704 kb on + strand at 1530.705 kb on - strand at 1530.705 kb on - strand at 1530.761 kb on + strand at 1530.762 kb on - strand at 1530.884 kb on + strand, within Sama_1248 at 1530.885 kb on - strand, within Sama_1248 at 1530.894 kb on + strand, within Sama_1248 at 1530.895 kb on - strand, within Sama_1248 at 1530.912 kb on - strand, within Sama_1248 at 1531.025 kb on - strand, within Sama_1248 at 1531.129 kb on + strand, within Sama_1248 at 1531.129 kb on + strand, within Sama_1248 at 1531.129 kb on + strand, within Sama_1248 at 1531.129 kb on + strand, within Sama_1248 at 1531.130 kb on - strand, within Sama_1248 at 1531.188 kb on - strand, within Sama_1248 at 1531.223 kb on + strand, within Sama_1248 at 1531.223 kb on + strand, within Sama_1248 at 1531.266 kb on + strand, within Sama_1248 at 1531.266 kb on + strand, within Sama_1248 at 1531.267 kb on - strand, within Sama_1248 at 1531.267 kb on - strand, within Sama_1248 at 1531.267 kb on - strand, within Sama_1248 at 1531.267 kb on - strand, within Sama_1248 at 1531.267 kb on - strand, within Sama_1248 at 1531.267 kb on - strand, within Sama_1248 at 1531.267 kb on - strand, within Sama_1248 at 1531.282 kb on + strand, within Sama_1248 at 1531.282 kb on + strand, within Sama_1248 at 1531.282 kb on + strand, within Sama_1248 at 1531.283 kb on - strand, within Sama_1248 at 1531.283 kb on - strand, within Sama_1248 at 1531.283 kb on - strand, within Sama_1248 at 1531.283 kb on - strand, within Sama_1248 at 1531.283 kb on - strand, within Sama_1248 at 1531.326 kb on - strand, within Sama_1248 at 1531.332 kb on - strand, within Sama_1248 at 1531.354 kb on - strand, within Sama_1248 at 1531.416 kb on - strand at 1531.473 kb on + strand at 1531.492 kb on + strand at 1531.492 kb on + strand at 1531.544 kb on - strand at 1531.544 kb on - strand at 1531.544 kb on - strand at 1531.588 kb on + strand at 1531.588 kb on + strand at 1531.589 kb on - strand at 1531.689 kb on + strand at 1531.689 kb on + strand at 1531.689 kb on + strand at 1531.689 kb on + strand at 1531.689 kb on + strand at 1531.690 kb on - strand at 1531.690 kb on - strand at 1531.690 kb on - strand at 1531.694 kb on - strand at 1531.694 kb on - strand at 1531.768 kb on + strand, within dinG at 1531.830 kb on - strand, within dinG at 1531.850 kb on + strand, within dinG at 1531.851 kb on - strand, within dinG at 1531.851 kb on - strand, within dinG at 1531.851 kb on - strand, within dinG at 1531.892 kb on + strand, within dinG at 1531.893 kb on - strand, within dinG at 1531.893 kb on - strand, within dinG at 1531.893 kb on - strand, within dinG at 1531.992 kb on - strand, within dinG at 1532.026 kb on + strand, within dinG at 1532.026 kb on + strand, within dinG at 1532.027 kb on - strand, within dinG at 1532.027 kb on - strand, within dinG at 1532.027 kb on - strand, within dinG at 1532.065 kb on + strand, within dinG at 1532.066 kb on - strand, within dinG at 1532.066 kb on - strand, within dinG at 1532.113 kb on + strand, within dinG at 1532.142 kb on + strand, within dinG at 1532.142 kb on + strand, within dinG at 1532.158 kb on + strand, within dinG at 1532.241 kb on - strand, within dinG at 1532.276 kb on - strand, within dinG at 1532.288 kb on + strand, within dinG at 1532.288 kb on + strand, within dinG at 1532.288 kb on + strand, within dinG at 1532.337 kb on - strand, within dinG at 1532.396 kb on + strand, within dinG at 1532.396 kb on + strand, within dinG at 1532.396 kb on + strand, within dinG at 1532.397 kb on - strand, within dinG
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate remove 1,529,754 - Sama_1246 0.59 -0.2 1,529,754 - Sama_1246 0.59 -0.7 1,529,754 - Sama_1246 0.59 -2.1 1,529,759 + Sama_1246 0.60 +0.0 1,529,759 + Sama_1246 0.60 +0.6 1,529,760 - Sama_1246 0.60 -0.4 1,529,760 - Sama_1246 0.60 -0.3 1,529,760 - Sama_1246 0.60 -0.1 1,529,917 - Sama_1246 0.83 -0.1 1,529,946 - Sama_1246 0.87 +0.7 1,529,946 - Sama_1246 0.87 +1.2 1,529,958 + Sama_1246 0.88 -0.1 1,529,958 + Sama_1246 0.88 +0.6 1,529,959 - Sama_1246 0.89 -0.7 1,529,959 - Sama_1246 0.89 +0.9 1,530,104 + +1.4 1,530,105 - +0.9 1,530,199 + Sama_1247 0.23 +1.3 1,530,255 + Sama_1247 0.31 +1.0 1,530,256 - Sama_1247 0.31 +2.7 1,530,256 - Sama_1247 0.31 +0.6 1,530,259 + Sama_1247 0.32 +0.6 1,530,269 + Sama_1247 0.33 +0.1 1,530,270 - Sama_1247 0.33 +2.6 1,530,352 + Sama_1247 0.46 +1.4 1,530,353 - Sama_1247 0.46 +1.0 1,530,353 - Sama_1247 0.46 +1.2 1,530,353 - Sama_1247 0.46 +0.7 1,530,354 + Sama_1247 0.46 +2.5 1,530,354 + Sama_1247 0.46 +1.4 1,530,354 + Sama_1247 0.46 -0.9 1,530,355 - Sama_1247 0.46 +1.1 1,530,400 + Sama_1247 0.53 -0.1 1,530,427 - Sama_1247 0.57 +1.9 1,530,538 + Sama_1247 0.74 +0.9 1,530,538 + Sama_1247 0.74 +0.9 1,530,539 - Sama_1247 0.74 +0.4 1,530,539 - Sama_1247 0.74 -0.1 1,530,585 + Sama_1247 0.81 +1.4 1,530,649 + -0.1 1,530,650 - +1.4 1,530,694 + +0.2 1,530,695 - +1.3 1,530,695 - +1.1 1,530,704 + +0.8 1,530,705 - +0.4 1,530,705 - +1.8 1,530,761 + +0.1 1,530,762 - +1.5 1,530,884 + Sama_1248 0.23 +0.9 1,530,885 - Sama_1248 0.23 +1.9 1,530,894 + Sama_1248 0.24 +1.3 1,530,895 - Sama_1248 0.24 +2.4 1,530,912 - Sama_1248 0.26 +1.4 1,531,025 - Sama_1248 0.41 +2.0 1,531,129 + Sama_1248 0.54 +1.6 1,531,129 + Sama_1248 0.54 +1.6 1,531,129 + Sama_1248 0.54 +1.2 1,531,129 + Sama_1248 0.54 -0.3 1,531,130 - Sama_1248 0.55 +0.2 1,531,188 - Sama_1248 0.62 +1.1 1,531,223 + Sama_1248 0.67 +2.3 1,531,223 + Sama_1248 0.67 +1.4 1,531,266 + Sama_1248 0.72 +0.5 1,531,266 + Sama_1248 0.72 +2.5 1,531,267 - Sama_1248 0.72 +1.2 1,531,267 - Sama_1248 0.72 +0.9 1,531,267 - Sama_1248 0.72 +1.7 1,531,267 - Sama_1248 0.72 +1.5 1,531,267 - Sama_1248 0.72 +0.9 1,531,267 - Sama_1248 0.72 +1.6 1,531,267 - Sama_1248 0.72 +1.9 1,531,282 + Sama_1248 0.74 +1.4 1,531,282 + Sama_1248 0.74 +0.6 1,531,282 + Sama_1248 0.74 +1.5 1,531,283 - Sama_1248 0.74 +1.6 1,531,283 - Sama_1248 0.74 +0.3 1,531,283 - Sama_1248 0.74 +1.5 1,531,283 - Sama_1248 0.74 +0.0 1,531,283 - Sama_1248 0.74 -1.7 1,531,326 - Sama_1248 0.80 +1.5 1,531,332 - Sama_1248 0.81 +1.6 1,531,354 - Sama_1248 0.83 -0.5 1,531,416 - +1.0 1,531,473 + +1.3 1,531,492 + +1.8 1,531,492 + +0.9 1,531,544 - +0.1 1,531,544 - -0.2 1,531,544 - +0.1 1,531,588 + +1.5 1,531,588 + -0.2 1,531,589 - -0.4 1,531,689 + +0.0 1,531,689 + +0.6 1,531,689 + +0.3 1,531,689 + +0.6 1,531,689 + +0.5 1,531,690 - -2.8 1,531,690 - -1.2 1,531,690 - -1.7 1,531,694 - -1.1 1,531,694 - -0.4 1,531,768 + dinG Sama_1249 0.13 -0.3 1,531,830 - dinG Sama_1249 0.16 -0.7 1,531,850 + dinG Sama_1249 0.17 +0.2 1,531,851 - dinG Sama_1249 0.17 +0.8 1,531,851 - dinG Sama_1249 0.17 -0.7 1,531,851 - dinG Sama_1249 0.17 -1.1 1,531,892 + dinG Sama_1249 0.19 +0.6 1,531,893 - dinG Sama_1249 0.19 +0.3 1,531,893 - dinG Sama_1249 0.19 -1.1 1,531,893 - dinG Sama_1249 0.19 -0.7 1,531,992 - dinG Sama_1249 0.24 -2.6 1,532,026 + dinG Sama_1249 0.26 -1.3 1,532,026 + dinG Sama_1249 0.26 +0.1 1,532,027 - dinG Sama_1249 0.26 -3.1 1,532,027 - dinG Sama_1249 0.26 -0.4 1,532,027 - dinG Sama_1249 0.26 -0.6 1,532,065 + dinG Sama_1249 0.28 +0.4 1,532,066 - dinG Sama_1249 0.28 -0.5 1,532,066 - dinG Sama_1249 0.28 +0.4 1,532,113 + dinG Sama_1249 0.30 +0.1 1,532,142 + dinG Sama_1249 0.31 +1.6 1,532,142 + dinG Sama_1249 0.31 -1.6 1,532,158 + dinG Sama_1249 0.32 +2.0 1,532,241 - dinG Sama_1249 0.36 -1.1 1,532,276 - dinG Sama_1249 0.38 -1.3 1,532,288 + dinG Sama_1249 0.38 +0.8 1,532,288 + dinG Sama_1249 0.38 -0.7 1,532,288 + dinG Sama_1249 0.38 +0.7 1,532,337 - dinG Sama_1249 0.41 +0.7 1,532,396 + dinG Sama_1249 0.44 +1.2 1,532,396 + dinG Sama_1249 0.44 +1.9 1,532,396 + dinG Sama_1249 0.44 +0.9 1,532,397 - dinG Sama_1249 0.44 -0.3
Or see this region's nucleotide sequence