Experiment: D,L-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0629 and rumB are separated by 34 nucleotides rumB and Sama_0631 overlap by 32 nucleotides
Sama_0629: Sama_0629 - glycerol-3-phosphate dehydrogenase (RefSeq), at 781,189 to 782,403
_0629
Sama_0630: rumB - 23S rRNA methyluridine methyltransferase (RefSeq), at 782,438 to 783,592
rumB
Sama_0631: Sama_0631 - signal transduction histidine kinase-like protein (RefSeq), at 783,561 to 784,757
_0631
Position (kb) 782
783
784 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 781.450 kb on + strand, within Sama_0629 at 781.450 kb on + strand, within Sama_0629 at 781.462 kb on + strand, within Sama_0629 at 781.463 kb on - strand, within Sama_0629 at 781.463 kb on - strand, within Sama_0629 at 781.463 kb on - strand, within Sama_0629 at 781.492 kb on - strand, within Sama_0629 at 781.513 kb on + strand, within Sama_0629 at 781.514 kb on - strand, within Sama_0629 at 781.523 kb on + strand, within Sama_0629 at 781.523 kb on + strand, within Sama_0629 at 781.524 kb on - strand, within Sama_0629 at 781.592 kb on + strand, within Sama_0629 at 781.592 kb on + strand, within Sama_0629 at 781.593 kb on - strand, within Sama_0629 at 781.624 kb on + strand, within Sama_0629 at 781.727 kb on + strand, within Sama_0629 at 781.727 kb on + strand, within Sama_0629 at 781.727 kb on + strand, within Sama_0629 at 781.727 kb on + strand, within Sama_0629 at 781.727 kb on + strand, within Sama_0629 at 781.727 kb on + strand, within Sama_0629 at 781.727 kb on + strand, within Sama_0629 at 781.727 kb on + strand, within Sama_0629 at 781.727 kb on + strand, within Sama_0629 at 781.727 kb on + strand, within Sama_0629 at 781.727 kb on + strand, within Sama_0629 at 781.727 kb on + strand, within Sama_0629 at 781.727 kb on + strand, within Sama_0629 at 781.727 kb on + strand, within Sama_0629 at 781.728 kb on - strand, within Sama_0629 at 781.728 kb on - strand, within Sama_0629 at 781.728 kb on - strand, within Sama_0629 at 781.728 kb on - strand, within Sama_0629 at 781.728 kb on - strand, within Sama_0629 at 781.728 kb on - strand, within Sama_0629 at 781.728 kb on - strand, within Sama_0629 at 781.728 kb on - strand, within Sama_0629 at 781.728 kb on - strand, within Sama_0629 at 781.728 kb on - strand, within Sama_0629 at 781.728 kb on - strand, within Sama_0629 at 781.761 kb on + strand, within Sama_0629 at 781.762 kb on - strand, within Sama_0629 at 781.762 kb on - strand, within Sama_0629 at 781.910 kb on + strand, within Sama_0629 at 781.910 kb on + strand, within Sama_0629 at 781.911 kb on - strand, within Sama_0629 at 781.911 kb on - strand, within Sama_0629 at 781.933 kb on + strand, within Sama_0629 at 781.934 kb on - strand, within Sama_0629 at 781.934 kb on - strand, within Sama_0629 at 781.934 kb on - strand, within Sama_0629 at 781.934 kb on - strand, within Sama_0629 at 781.971 kb on + strand, within Sama_0629 at 781.972 kb on - strand, within Sama_0629 at 781.972 kb on - strand, within Sama_0629 at 781.972 kb on - strand, within Sama_0629 at 781.972 kb on - strand, within Sama_0629 at 782.065 kb on + strand, within Sama_0629 at 782.065 kb on + strand, within Sama_0629 at 782.080 kb on + strand, within Sama_0629 at 782.081 kb on - strand, within Sama_0629 at 782.081 kb on - strand, within Sama_0629 at 782.081 kb on - strand, within Sama_0629 at 782.089 kb on + strand, within Sama_0629 at 782.090 kb on - strand, within Sama_0629 at 782.090 kb on - strand, within Sama_0629 at 782.090 kb on - strand, within Sama_0629 at 782.090 kb on - strand, within Sama_0629 at 782.090 kb on - strand, within Sama_0629 at 782.090 kb on - strand, within Sama_0629 at 782.139 kb on + strand, within Sama_0629 at 782.140 kb on - strand, within Sama_0629 at 782.140 kb on - strand, within Sama_0629 at 782.140 kb on - strand, within Sama_0629 at 782.249 kb on - strand, within Sama_0629 at 782.249 kb on - strand, within Sama_0629 at 782.323 kb on - strand at 782.346 kb on + strand at 782.385 kb on + strand at 782.402 kb on - strand at 782.420 kb on + strand at 782.450 kb on + strand at 782.451 kb on - strand at 782.705 kb on + strand, within rumB at 782.764 kb on + strand, within rumB at 782.765 kb on - strand, within rumB at 782.803 kb on + strand, within rumB at 782.803 kb on + strand, within rumB at 782.804 kb on - strand, within rumB at 782.804 kb on - strand, within rumB at 782.804 kb on - strand, within rumB at 782.804 kb on - strand, within rumB at 782.804 kb on - strand, within rumB at 782.804 kb on - strand, within rumB at 782.810 kb on - strand, within rumB at 782.810 kb on - strand, within rumB at 782.845 kb on + strand, within rumB at 782.845 kb on + strand, within rumB at 782.846 kb on - strand, within rumB at 782.846 kb on - strand, within rumB at 782.846 kb on - strand, within rumB at 782.932 kb on + strand, within rumB at 782.932 kb on + strand, within rumB at 782.932 kb on + strand, within rumB at 782.932 kb on + strand, within rumB at 782.933 kb on - strand, within rumB at 783.027 kb on + strand, within rumB at 783.027 kb on + strand, within rumB at 783.027 kb on + strand, within rumB at 783.099 kb on + strand, within rumB at 783.100 kb on - strand, within rumB at 783.102 kb on - strand, within rumB at 783.132 kb on + strand, within rumB at 783.132 kb on + strand, within rumB at 783.132 kb on + strand, within rumB at 783.133 kb on - strand, within rumB at 783.133 kb on - strand, within rumB at 783.133 kb on - strand, within rumB at 783.169 kb on - strand, within rumB at 783.280 kb on + strand, within rumB at 783.357 kb on + strand, within rumB at 783.357 kb on + strand, within rumB at 783.357 kb on + strand, within rumB at 783.357 kb on + strand, within rumB at 783.434 kb on + strand, within rumB at 783.435 kb on - strand, within rumB at 783.435 kb on - strand, within rumB at 783.435 kb on - strand, within rumB at 783.445 kb on + strand, within rumB at 783.446 kb on - strand, within rumB at 783.488 kb on + strand at 783.668 kb on + strand at 783.668 kb on + strand at 783.668 kb on + strand at 783.668 kb on + strand at 783.668 kb on + strand at 783.668 kb on + strand at 783.668 kb on + strand at 783.669 kb on - strand at 783.669 kb on - strand at 783.669 kb on - strand at 783.670 kb on + strand at 783.670 kb on + strand at 783.670 kb on + strand at 783.670 kb on + strand at 783.670 kb on + strand at 783.670 kb on + strand at 783.670 kb on + strand at 783.670 kb on + strand at 783.671 kb on - strand at 783.671 kb on - strand at 783.671 kb on - strand at 783.671 kb on - strand at 783.671 kb on - strand at 783.704 kb on + strand, within Sama_0631 at 783.705 kb on - strand, within Sama_0631 at 783.750 kb on + strand, within Sama_0631 at 783.815 kb on + strand, within Sama_0631 at 783.815 kb on + strand, within Sama_0631 at 783.815 kb on + strand, within Sama_0631 at 783.816 kb on - strand, within Sama_0631 at 783.816 kb on - strand, within Sama_0631 at 783.818 kb on + strand, within Sama_0631 at 783.819 kb on - strand, within Sama_0631 at 783.819 kb on - strand, within Sama_0631 at 783.819 kb on - strand, within Sama_0631 at 783.819 kb on - strand, within Sama_0631 at 783.819 kb on - strand, within Sama_0631 at 783.821 kb on + strand, within Sama_0631 at 783.850 kb on - strand, within Sama_0631 at 783.875 kb on + strand, within Sama_0631 at 783.875 kb on + strand, within Sama_0631 at 783.876 kb on - strand, within Sama_0631 at 783.940 kb on + strand, within Sama_0631 at 783.940 kb on + strand, within Sama_0631 at 783.941 kb on - strand, within Sama_0631 at 783.941 kb on - strand, within Sama_0631 at 783.952 kb on + strand, within Sama_0631 at 783.952 kb on + strand, within Sama_0631 at 783.952 kb on + strand, within Sama_0631 at 783.952 kb on + strand, within Sama_0631 at 783.952 kb on + strand, within Sama_0631 at 783.952 kb on + strand, within Sama_0631 at 783.952 kb on + strand, within Sama_0631 at 783.953 kb on - strand, within Sama_0631 at 783.953 kb on - strand, within Sama_0631 at 783.966 kb on - strand, within Sama_0631 at 783.966 kb on - strand, within Sama_0631 at 784.054 kb on + strand, within Sama_0631 at 784.054 kb on + strand, within Sama_0631 at 784.054 kb on + strand, within Sama_0631 at 784.054 kb on + strand, within Sama_0631 at 784.054 kb on + strand, within Sama_0631 at 784.054 kb on + strand, within Sama_0631 at 784.055 kb on - strand, within Sama_0631 at 784.055 kb on - strand, within Sama_0631 at 784.055 kb on - strand, within Sama_0631 at 784.162 kb on - strand, within Sama_0631 at 784.173 kb on + strand, within Sama_0631 at 784.174 kb on - strand, within Sama_0631 at 784.174 kb on - strand, within Sama_0631 at 784.174 kb on - strand, within Sama_0631 at 784.174 kb on - strand, within Sama_0631 at 784.267 kb on + strand, within Sama_0631 at 784.267 kb on + strand, within Sama_0631 at 784.267 kb on + strand, within Sama_0631 at 784.405 kb on + strand, within Sama_0631 at 784.405 kb on + strand, within Sama_0631 at 784.406 kb on - strand, within Sama_0631 at 784.406 kb on - strand, within Sama_0631 at 784.428 kb on + strand, within Sama_0631 at 784.428 kb on + strand, within Sama_0631 at 784.428 kb on + strand, within Sama_0631 at 784.429 kb on - strand, within Sama_0631 at 784.429 kb on - strand, within Sama_0631 at 784.484 kb on + strand, within Sama_0631 at 784.499 kb on - strand, within Sama_0631 at 784.563 kb on + strand, within Sama_0631 at 784.563 kb on + strand, within Sama_0631 at 784.564 kb on - strand, within Sama_0631 at 784.583 kb on + strand, within Sama_0631
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate remove 781,450 + Sama_0629 0.21 -0.3 781,450 + Sama_0629 0.21 +0.2 781,462 + Sama_0629 0.22 +0.4 781,463 - Sama_0629 0.23 +0.7 781,463 - Sama_0629 0.23 +1.4 781,463 - Sama_0629 0.23 +2.0 781,492 - Sama_0629 0.25 -0.2 781,513 + Sama_0629 0.27 +1.2 781,514 - Sama_0629 0.27 +0.9 781,523 + Sama_0629 0.27 -0.6 781,523 + Sama_0629 0.27 -0.4 781,524 - Sama_0629 0.28 +0.8 781,592 + Sama_0629 0.33 +1.1 781,592 + Sama_0629 0.33 +0.2 781,593 - Sama_0629 0.33 -0.0 781,624 + Sama_0629 0.36 +0.9 781,727 + Sama_0629 0.44 +0.4 781,727 + Sama_0629 0.44 +0.4 781,727 + Sama_0629 0.44 -0.6 781,727 + Sama_0629 0.44 +1.0 781,727 + Sama_0629 0.44 +0.6 781,727 + Sama_0629 0.44 -0.0 781,727 + Sama_0629 0.44 +0.5 781,727 + Sama_0629 0.44 +0.7 781,727 + Sama_0629 0.44 +0.9 781,727 + Sama_0629 0.44 +1.2 781,727 + Sama_0629 0.44 -1.0 781,727 + Sama_0629 0.44 +1.4 781,727 + Sama_0629 0.44 -0.1 781,727 + Sama_0629 0.44 -0.2 781,728 - Sama_0629 0.44 +1.2 781,728 - Sama_0629 0.44 +0.8 781,728 - Sama_0629 0.44 +0.2 781,728 - Sama_0629 0.44 +1.6 781,728 - Sama_0629 0.44 +0.0 781,728 - Sama_0629 0.44 -0.1 781,728 - Sama_0629 0.44 -0.2 781,728 - Sama_0629 0.44 +0.8 781,728 - Sama_0629 0.44 +3.2 781,728 - Sama_0629 0.44 +1.4 781,728 - Sama_0629 0.44 +0.9 781,761 + Sama_0629 0.47 -0.2 781,762 - Sama_0629 0.47 -0.5 781,762 - Sama_0629 0.47 +0.9 781,910 + Sama_0629 0.59 +2.0 781,910 + Sama_0629 0.59 +0.5 781,911 - Sama_0629 0.59 +0.6 781,911 - Sama_0629 0.59 +0.3 781,933 + Sama_0629 0.61 +1.4 781,934 - Sama_0629 0.61 +0.7 781,934 - Sama_0629 0.61 +0.1 781,934 - Sama_0629 0.61 +1.7 781,934 - Sama_0629 0.61 +0.5 781,971 + Sama_0629 0.64 +0.7 781,972 - Sama_0629 0.64 +1.2 781,972 - Sama_0629 0.64 +0.9 781,972 - Sama_0629 0.64 -0.5 781,972 - Sama_0629 0.64 -0.1 782,065 + Sama_0629 0.72 +1.4 782,065 + Sama_0629 0.72 +0.7 782,080 + Sama_0629 0.73 +0.5 782,081 - Sama_0629 0.73 +0.5 782,081 - Sama_0629 0.73 +0.5 782,081 - Sama_0629 0.73 +0.2 782,089 + Sama_0629 0.74 +0.1 782,090 - Sama_0629 0.74 -0.7 782,090 - Sama_0629 0.74 +2.2 782,090 - Sama_0629 0.74 -0.2 782,090 - Sama_0629 0.74 +0.2 782,090 - Sama_0629 0.74 -1.6 782,090 - Sama_0629 0.74 +2.0 782,139 + Sama_0629 0.78 +0.2 782,140 - Sama_0629 0.78 +0.0 782,140 - Sama_0629 0.78 +1.8 782,140 - Sama_0629 0.78 +2.0 782,249 - Sama_0629 0.87 +0.8 782,249 - Sama_0629 0.87 -0.8 782,323 - +0.6 782,346 + +0.8 782,385 + -0.1 782,402 - +0.4 782,420 + -1.6 782,450 + +0.2 782,451 - -0.2 782,705 + rumB Sama_0630 0.23 +0.1 782,764 + rumB Sama_0630 0.28 -0.7 782,765 - rumB Sama_0630 0.28 +0.6 782,803 + rumB Sama_0630 0.32 -0.3 782,803 + rumB Sama_0630 0.32 +0.8 782,804 - rumB Sama_0630 0.32 -0.9 782,804 - rumB Sama_0630 0.32 -0.4 782,804 - rumB Sama_0630 0.32 +0.3 782,804 - rumB Sama_0630 0.32 -1.1 782,804 - rumB Sama_0630 0.32 -0.4 782,804 - rumB Sama_0630 0.32 -2.1 782,810 - rumB Sama_0630 0.32 -1.2 782,810 - rumB Sama_0630 0.32 -0.1 782,845 + rumB Sama_0630 0.35 -0.0 782,845 + rumB Sama_0630 0.35 +0.0 782,846 - rumB Sama_0630 0.35 +0.6 782,846 - rumB Sama_0630 0.35 -0.1 782,846 - rumB Sama_0630 0.35 -0.4 782,932 + rumB Sama_0630 0.43 -1.2 782,932 + rumB Sama_0630 0.43 +0.2 782,932 + rumB Sama_0630 0.43 +0.1 782,932 + rumB Sama_0630 0.43 -0.8 782,933 - rumB Sama_0630 0.43 +0.2 783,027 + rumB Sama_0630 0.51 +0.0 783,027 + rumB Sama_0630 0.51 +0.8 783,027 + rumB Sama_0630 0.51 -0.8 783,099 + rumB Sama_0630 0.57 +0.6 783,100 - rumB Sama_0630 0.57 -0.2 783,102 - rumB Sama_0630 0.57 -0.6 783,132 + rumB Sama_0630 0.60 -1.3 783,132 + rumB Sama_0630 0.60 +1.1 783,132 + rumB Sama_0630 0.60 +0.2 783,133 - rumB Sama_0630 0.60 -1.0 783,133 - rumB Sama_0630 0.60 +1.8 783,133 - rumB Sama_0630 0.60 +0.5 783,169 - rumB Sama_0630 0.63 -0.5 783,280 + rumB Sama_0630 0.73 +0.9 783,357 + rumB Sama_0630 0.80 +0.1 783,357 + rumB Sama_0630 0.80 -0.4 783,357 + rumB Sama_0630 0.80 +1.2 783,357 + rumB Sama_0630 0.80 -0.5 783,434 + rumB Sama_0630 0.86 -0.2 783,435 - rumB Sama_0630 0.86 -0.4 783,435 - rumB Sama_0630 0.86 -2.0 783,435 - rumB Sama_0630 0.86 -0.5 783,445 + rumB Sama_0630 0.87 +0.6 783,446 - rumB Sama_0630 0.87 +0.3 783,488 + +0.5 783,668 + -1.3 783,668 + -2.6 783,668 + -0.2 783,668 + -4.0 783,668 + -1.6 783,668 + -3.0 783,668 + -2.3 783,669 - -2.4 783,669 - -2.3 783,669 - -1.6 783,670 + +0.4 783,670 + -2.0 783,670 + +1.2 783,670 + -2.0 783,670 + -1.0 783,670 + +0.2 783,670 + -2.2 783,670 + -1.3 783,671 - -3.1 783,671 - -1.4 783,671 - -3.7 783,671 - -1.3 783,671 - -3.4 783,704 + Sama_0631 0.12 -0.2 783,705 - Sama_0631 0.12 -0.9 783,750 + Sama_0631 0.16 -2.4 783,815 + Sama_0631 0.21 -1.2 783,815 + Sama_0631 0.21 -2.0 783,815 + Sama_0631 0.21 -3.2 783,816 - Sama_0631 0.21 -1.3 783,816 - Sama_0631 0.21 -0.8 783,818 + Sama_0631 0.21 -2.5 783,819 - Sama_0631 0.22 -0.6 783,819 - Sama_0631 0.22 -1.2 783,819 - Sama_0631 0.22 -1.8 783,819 - Sama_0631 0.22 -1.6 783,819 - Sama_0631 0.22 -1.6 783,821 + Sama_0631 0.22 +0.2 783,850 - Sama_0631 0.24 -1.8 783,875 + Sama_0631 0.26 -2.6 783,875 + Sama_0631 0.26 -2.3 783,876 - Sama_0631 0.26 -2.8 783,940 + Sama_0631 0.32 -1.4 783,940 + Sama_0631 0.32 -2.0 783,941 - Sama_0631 0.32 -0.4 783,941 - Sama_0631 0.32 -2.2 783,952 + Sama_0631 0.33 -1.2 783,952 + Sama_0631 0.33 -2.9 783,952 + Sama_0631 0.33 -2.9 783,952 + Sama_0631 0.33 -0.6 783,952 + Sama_0631 0.33 -1.8 783,952 + Sama_0631 0.33 -2.6 783,952 + Sama_0631 0.33 -0.2 783,953 - Sama_0631 0.33 -1.6 783,953 - Sama_0631 0.33 -3.5 783,966 - Sama_0631 0.34 -3.0 783,966 - Sama_0631 0.34 -1.2 784,054 + Sama_0631 0.41 -0.9 784,054 + Sama_0631 0.41 -2.1 784,054 + Sama_0631 0.41 -0.2 784,054 + Sama_0631 0.41 -3.5 784,054 + Sama_0631 0.41 -0.7 784,054 + Sama_0631 0.41 -3.4 784,055 - Sama_0631 0.41 -1.6 784,055 - Sama_0631 0.41 -2.8 784,055 - Sama_0631 0.41 -1.1 784,162 - Sama_0631 0.50 -2.8 784,173 + Sama_0631 0.51 -2.0 784,174 - Sama_0631 0.51 -1.8 784,174 - Sama_0631 0.51 -2.4 784,174 - Sama_0631 0.51 -2.4 784,174 - Sama_0631 0.51 -1.4 784,267 + Sama_0631 0.59 -3.7 784,267 + Sama_0631 0.59 -2.3 784,267 + Sama_0631 0.59 -2.7 784,405 + Sama_0631 0.71 -2.6 784,405 + Sama_0631 0.71 -2.7 784,406 - Sama_0631 0.71 -1.2 784,406 - Sama_0631 0.71 -0.4 784,428 + Sama_0631 0.72 -2.9 784,428 + Sama_0631 0.72 -0.6 784,428 + Sama_0631 0.72 -2.5 784,429 - Sama_0631 0.73 -0.6 784,429 - Sama_0631 0.73 -1.2 784,484 + Sama_0631 0.77 -1.4 784,499 - Sama_0631 0.78 -2.0 784,563 + Sama_0631 0.84 -3.1 784,563 + Sama_0631 0.84 -1.4 784,564 - Sama_0631 0.84 -0.7 784,583 + Sama_0631 0.85 -1.6
Or see this region's nucleotide sequence