Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c09220 and PGA1_c09230 are separated by 238 nucleotides PGA1_c09230 and PGA1_c09240 overlap by 4 nucleotides PGA1_c09240 and PGA1_c09250 are separated by 34 nucleotides PGA1_c09250 and PGA1_c09260 are separated by 225 nucleotides
PGA1_c09220: PGA1_c09220 - Predicted CoA-binding protein, at 946,196 to 946,666
_c09220
PGA1_c09230: PGA1_c09230 - phosphoribosyl-ATP pyrophosphatase HisE, at 946,905 to 947,222
_c09230
PGA1_c09240: PGA1_c09240 - imidazole glycerol phosphate synthase subunit HisF, at 947,219 to 947,980
_c09240
PGA1_c09250: PGA1_c09250 - Protein of unknown function (DUF2867)., at 948,015 to 948,497
_c09250
PGA1_c09260: PGA1_c09260 - Uncharacterized conserved protein, at 948,723 to 949,169
_c09260
Position (kb) 947
948 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 946.266 kb on - strand, within PGA1_c09220 at 946.269 kb on + strand, within PGA1_c09220 at 946.329 kb on - strand, within PGA1_c09220 at 946.371 kb on - strand, within PGA1_c09220 at 946.382 kb on + strand, within PGA1_c09220 at 946.451 kb on - strand, within PGA1_c09220 at 946.483 kb on + strand, within PGA1_c09220 at 946.518 kb on + strand, within PGA1_c09220 at 946.518 kb on + strand, within PGA1_c09220 at 946.518 kb on + strand, within PGA1_c09220 at 946.528 kb on + strand, within PGA1_c09220 at 946.546 kb on + strand, within PGA1_c09220 at 946.567 kb on - strand, within PGA1_c09220 at 946.616 kb on + strand, within PGA1_c09220 at 946.878 kb on + strand at 948.010 kb on + strand at 948.020 kb on - strand at 948.054 kb on - strand at 948.054 kb on - strand at 948.093 kb on - strand, within PGA1_c09250 at 948.115 kb on + strand, within PGA1_c09250 at 948.160 kb on + strand, within PGA1_c09250 at 948.227 kb on + strand, within PGA1_c09250 at 948.235 kb on - strand, within PGA1_c09250 at 948.235 kb on - strand, within PGA1_c09250 at 948.245 kb on + strand, within PGA1_c09250 at 948.245 kb on + strand, within PGA1_c09250 at 948.252 kb on + strand, within PGA1_c09250 at 948.252 kb on + strand, within PGA1_c09250 at 948.253 kb on - strand, within PGA1_c09250 at 948.344 kb on - strand, within PGA1_c09250 at 948.436 kb on + strand, within PGA1_c09250 at 948.510 kb on + strand at 948.516 kb on - strand at 948.523 kb on - strand at 948.532 kb on + strand at 948.532 kb on + strand at 948.540 kb on - strand at 948.551 kb on - strand at 948.593 kb on + strand at 948.616 kb on + strand at 948.618 kb on - strand at 948.618 kb on - strand at 948.624 kb on - strand at 948.635 kb on + strand at 948.662 kb on + strand at 948.669 kb on + strand at 948.669 kb on + strand at 948.669 kb on + strand at 948.669 kb on + strand at 948.674 kb on + strand at 948.674 kb on + strand at 948.674 kb on + strand at 948.674 kb on + strand at 948.677 kb on - strand at 948.677 kb on - strand at 948.677 kb on - strand at 948.677 kb on - strand at 948.679 kb on + strand at 948.679 kb on + strand at 948.682 kb on - strand at 948.682 kb on - strand at 948.682 kb on - strand at 948.707 kb on + strand at 948.759 kb on + strand at 948.781 kb on + strand, within PGA1_c09260 at 948.781 kb on + strand, within PGA1_c09260 at 948.845 kb on - strand, within PGA1_c09260 at 948.870 kb on + strand, within PGA1_c09260 at 948.870 kb on + strand, within PGA1_c09260 at 948.975 kb on - strand, within PGA1_c09260 at 948.975 kb on - strand, within PGA1_c09260
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 946,266 - PGA1_c09220 0.15 -1.4 946,269 + PGA1_c09220 0.15 +1.1 946,329 - PGA1_c09220 0.28 -0.3 946,371 - PGA1_c09220 0.37 +0.1 946,382 + PGA1_c09220 0.39 -2.7 946,451 - PGA1_c09220 0.54 -0.3 946,483 + PGA1_c09220 0.61 +0.2 946,518 + PGA1_c09220 0.68 -1.0 946,518 + PGA1_c09220 0.68 -1.9 946,518 + PGA1_c09220 0.68 +1.5 946,528 + PGA1_c09220 0.70 -1.3 946,546 + PGA1_c09220 0.74 +1.3 946,567 - PGA1_c09220 0.79 +1.9 946,616 + PGA1_c09220 0.89 -0.6 946,878 + +0.1 948,010 + -1.7 948,020 - +2.9 948,054 - +1.5 948,054 - -0.9 948,093 - PGA1_c09250 0.16 -2.3 948,115 + PGA1_c09250 0.21 +0.1 948,160 + PGA1_c09250 0.30 -0.1 948,227 + PGA1_c09250 0.44 +1.9 948,235 - PGA1_c09250 0.46 -0.9 948,235 - PGA1_c09250 0.46 -1.4 948,245 + PGA1_c09250 0.48 -1.7 948,245 + PGA1_c09250 0.48 -0.4 948,252 + PGA1_c09250 0.49 -0.4 948,252 + PGA1_c09250 0.49 +2.2 948,253 - PGA1_c09250 0.49 +0.1 948,344 - PGA1_c09250 0.68 +0.3 948,436 + PGA1_c09250 0.87 -1.4 948,510 + -0.6 948,516 - -3.3 948,523 - +0.7 948,532 + -0.7 948,532 + +0.9 948,540 - -0.9 948,551 - -0.4 948,593 + -0.2 948,616 + -2.6 948,618 - +0.3 948,618 - -1.9 948,624 - -0.1 948,635 + +1.9 948,662 + +1.2 948,669 + +0.5 948,669 + +1.9 948,669 + +0.5 948,669 + +0.2 948,674 + -1.3 948,674 + -0.5 948,674 + +0.7 948,674 + +1.1 948,677 - +1.0 948,677 - +0.6 948,677 - -0.7 948,677 - +0.7 948,679 + +1.3 948,679 + +0.3 948,682 - +0.8 948,682 - -0.1 948,682 - -0.1 948,707 + -0.7 948,759 + +1.6 948,781 + PGA1_c09260 0.13 -1.4 948,781 + PGA1_c09260 0.13 -1.8 948,845 - PGA1_c09260 0.27 -0.7 948,870 + PGA1_c09260 0.33 -0.9 948,870 + PGA1_c09260 0.33 +1.6 948,975 - PGA1_c09260 0.56 -1.4 948,975 - PGA1_c09260 0.56 +0.6
Or see this region's nucleotide sequence