Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c09010 and PGA1_c09020 are separated by 262 nucleotides PGA1_c09020 and PGA1_c09030 are separated by 261 nucleotides
PGA1_c09010: PGA1_c09010 - RNA polymerase sigma-32 factor RpoH, at 927,846 to 928,742
_c09010
PGA1_c09020: PGA1_c09020 - putative methyl-accepting chemotaxis protein, at 929,005 to 930,939
_c09020
PGA1_c09030: PGA1_c09030 - phosphomethylpyrimidine kinase ThiD, at 931,201 to 931,998
_c09030
Position (kb) 929
930
931 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 928.753 kb on - strand at 928.845 kb on + strand at 928.846 kb on + strand at 928.846 kb on + strand at 928.846 kb on + strand at 928.846 kb on + strand at 928.846 kb on + strand at 928.846 kb on + strand at 928.846 kb on + strand at 928.846 kb on + strand at 928.846 kb on + strand at 928.846 kb on + strand at 928.846 kb on + strand at 928.854 kb on - strand at 928.854 kb on - strand at 928.854 kb on - strand at 928.854 kb on - strand at 928.854 kb on - strand at 928.854 kb on - strand at 928.854 kb on - strand at 928.854 kb on - strand at 928.854 kb on - strand at 928.880 kb on - strand at 928.880 kb on - strand at 928.885 kb on + strand at 929.037 kb on + strand at 929.115 kb on + strand at 929.123 kb on - strand at 929.132 kb on + strand at 929.237 kb on + strand, within PGA1_c09020 at 929.367 kb on + strand, within PGA1_c09020 at 929.397 kb on + strand, within PGA1_c09020 at 929.455 kb on + strand, within PGA1_c09020 at 929.458 kb on - strand, within PGA1_c09020 at 929.473 kb on - strand, within PGA1_c09020 at 929.495 kb on + strand, within PGA1_c09020 at 929.556 kb on + strand, within PGA1_c09020 at 929.564 kb on - strand, within PGA1_c09020 at 929.588 kb on + strand, within PGA1_c09020 at 929.596 kb on - strand, within PGA1_c09020 at 929.601 kb on - strand, within PGA1_c09020 at 929.608 kb on + strand, within PGA1_c09020 at 929.642 kb on + strand, within PGA1_c09020 at 929.642 kb on + strand, within PGA1_c09020 at 929.642 kb on + strand, within PGA1_c09020 at 929.642 kb on + strand, within PGA1_c09020 at 929.650 kb on - strand, within PGA1_c09020 at 929.692 kb on - strand, within PGA1_c09020 at 929.695 kb on + strand, within PGA1_c09020 at 929.728 kb on - strand, within PGA1_c09020 at 929.759 kb on + strand, within PGA1_c09020 at 929.761 kb on + strand, within PGA1_c09020 at 929.799 kb on + strand, within PGA1_c09020 at 929.815 kb on - strand, within PGA1_c09020 at 929.815 kb on - strand, within PGA1_c09020 at 929.833 kb on - strand, within PGA1_c09020 at 929.834 kb on + strand, within PGA1_c09020 at 929.834 kb on + strand, within PGA1_c09020 at 929.866 kb on - strand, within PGA1_c09020 at 929.877 kb on + strand, within PGA1_c09020 at 929.895 kb on - strand, within PGA1_c09020 at 929.895 kb on - strand, within PGA1_c09020 at 929.930 kb on - strand, within PGA1_c09020 at 930.001 kb on + strand, within PGA1_c09020 at 930.001 kb on + strand, within PGA1_c09020 at 930.001 kb on + strand, within PGA1_c09020 at 930.091 kb on - strand, within PGA1_c09020 at 930.257 kb on + strand, within PGA1_c09020 at 930.272 kb on + strand, within PGA1_c09020 at 930.589 kb on - strand, within PGA1_c09020 at 930.980 kb on + strand at 930.980 kb on + strand at 930.988 kb on - strand at 930.988 kb on - strand at 931.018 kb on - strand at 931.064 kb on + strand at 931.069 kb on + strand at 931.077 kb on - strand at 931.103 kb on + strand at 931.130 kb on - strand at 931.199 kb on + strand at 931.199 kb on + strand at 931.255 kb on + strand at 931.255 kb on + strand at 931.316 kb on - strand, within PGA1_c09030 at 931.336 kb on + strand, within PGA1_c09030 at 931.414 kb on - strand, within PGA1_c09030 at 931.418 kb on + strand, within PGA1_c09030 at 931.426 kb on - strand, within PGA1_c09030 at 931.426 kb on - strand, within PGA1_c09030 at 931.480 kb on + strand, within PGA1_c09030 at 931.490 kb on + strand, within PGA1_c09030 at 931.490 kb on + strand, within PGA1_c09030 at 931.613 kb on - strand, within PGA1_c09030 at 931.667 kb on - strand, within PGA1_c09030 at 931.848 kb on - strand, within PGA1_c09030 at 931.880 kb on + strand, within PGA1_c09030 at 931.922 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 928,753 - -0.9 928,845 + +0.5 928,846 + -2.0 928,846 + +1.5 928,846 + -2.0 928,846 + -0.9 928,846 + +0.9 928,846 + +0.3 928,846 + -0.2 928,846 + -0.4 928,846 + +0.9 928,846 + +0.1 928,846 + +1.4 928,854 - -1.9 928,854 - -1.4 928,854 - +0.2 928,854 - -1.0 928,854 - -0.1 928,854 - +0.4 928,854 - +1.3 928,854 - +0.8 928,854 - -0.2 928,880 - -0.9 928,880 - -0.1 928,885 + -1.8 929,037 + +1.7 929,115 + +1.9 929,123 - -0.4 929,132 + +0.9 929,237 + PGA1_c09020 0.12 -0.7 929,367 + PGA1_c09020 0.19 -0.4 929,397 + PGA1_c09020 0.20 -2.0 929,455 + PGA1_c09020 0.23 +0.3 929,458 - PGA1_c09020 0.23 -0.5 929,473 - PGA1_c09020 0.24 -1.0 929,495 + PGA1_c09020 0.25 -1.9 929,556 + PGA1_c09020 0.28 -0.5 929,564 - PGA1_c09020 0.29 +0.2 929,588 + PGA1_c09020 0.30 +1.0 929,596 - PGA1_c09020 0.31 -1.7 929,601 - PGA1_c09020 0.31 +1.3 929,608 + PGA1_c09020 0.31 +0.5 929,642 + PGA1_c09020 0.33 +0.9 929,642 + PGA1_c09020 0.33 -0.5 929,642 + PGA1_c09020 0.33 -0.5 929,642 + PGA1_c09020 0.33 +1.1 929,650 - PGA1_c09020 0.33 -1.4 929,692 - PGA1_c09020 0.36 +1.9 929,695 + PGA1_c09020 0.36 -2.1 929,728 - PGA1_c09020 0.37 -0.9 929,759 + PGA1_c09020 0.39 +0.3 929,761 + PGA1_c09020 0.39 +1.2 929,799 + PGA1_c09020 0.41 +1.4 929,815 - PGA1_c09020 0.42 +0.6 929,815 - PGA1_c09020 0.42 -0.1 929,833 - PGA1_c09020 0.43 -0.2 929,834 + PGA1_c09020 0.43 -0.7 929,834 + PGA1_c09020 0.43 -0.1 929,866 - PGA1_c09020 0.44 -3.1 929,877 + PGA1_c09020 0.45 +0.9 929,895 - PGA1_c09020 0.46 -1.2 929,895 - PGA1_c09020 0.46 -0.8 929,930 - PGA1_c09020 0.48 +2.7 930,001 + PGA1_c09020 0.51 -0.3 930,001 + PGA1_c09020 0.51 +0.4 930,001 + PGA1_c09020 0.51 -2.7 930,091 - PGA1_c09020 0.56 +0.9 930,257 + PGA1_c09020 0.65 -0.7 930,272 + PGA1_c09020 0.65 -0.9 930,589 - PGA1_c09020 0.82 -0.7 930,980 + +1.6 930,980 + +1.9 930,988 - -0.3 930,988 - -0.7 931,018 - +0.5 931,064 + -0.2 931,069 + -0.5 931,077 - +1.9 931,103 + +1.5 931,130 - +2.5 931,199 + +0.9 931,199 + -1.8 931,255 + -0.2 931,255 + -1.5 931,316 - PGA1_c09030 0.14 +0.3 931,336 + PGA1_c09030 0.17 -0.2 931,414 - PGA1_c09030 0.27 -1.3 931,418 + PGA1_c09030 0.27 +0.2 931,426 - PGA1_c09030 0.28 +1.6 931,426 - PGA1_c09030 0.28 +0.6 931,480 + PGA1_c09030 0.35 -2.0 931,490 + PGA1_c09030 0.36 +0.3 931,490 + PGA1_c09030 0.36 +0.3 931,613 - PGA1_c09030 0.52 +0.7 931,667 - PGA1_c09030 0.58 -0.9 931,848 - PGA1_c09030 0.81 -2.0 931,880 + PGA1_c09030 0.85 -1.3 931,922 - -0.5
Or see this region's nucleotide sequence