Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c08600 and PGA1_c08610 are separated by 261 nucleotides PGA1_c08610 and PGA1_c08620 are separated by 335 nucleotides PGA1_c08620 and PGA1_c08630 are separated by 144 nucleotides PGA1_c08630 and PGA1_c08640 are separated by 141 nucleotides
PGA1_c08600: PGA1_c08600 - diguanylate cyclase (GGDEF) domain-containing protein, at 887,639 to 888,640
_c08600
PGA1_c08610: PGA1_c08610 - tRNA-Glu, at 888,902 to 888,976
_c08610
PGA1_c08620: PGA1_c08620 - tRNA-Glu, at 889,312 to 889,386
_c08620
PGA1_c08630: PGA1_c08630 - single-stranded-DNA-specific exonuclease RecJ, at 889,531 to 891,273
_c08630
PGA1_c08640: PGA1_c08640 - fructose-1,6-bisphosphatase class 2, at 891,415 to 892,398
_c08640
Position (kb) 889
890
891
892 Strain fitness (log2 ratio) -2
-1
0
1
2 at 888.536 kb on + strand, within PGA1_c08600 at 888.537 kb on + strand, within PGA1_c08600 at 888.592 kb on - strand at 888.635 kb on + strand at 888.636 kb on - strand at 888.677 kb on - strand at 888.695 kb on - strand at 888.723 kb on + strand at 888.723 kb on + strand at 888.723 kb on + strand at 888.723 kb on + strand at 888.731 kb on - strand at 888.769 kb on - strand at 888.769 kb on - strand at 888.843 kb on + strand at 888.843 kb on + strand at 888.851 kb on - strand at 888.857 kb on - strand at 888.885 kb on - strand at 888.893 kb on - strand at 888.893 kb on - strand at 889.183 kb on + strand at 889.183 kb on + strand at 889.490 kb on + strand at 889.491 kb on + strand at 889.506 kb on - strand at 889.527 kb on + strand at 891.332 kb on + strand at 891.332 kb on + strand at 891.332 kb on + strand at 891.332 kb on + strand at 891.340 kb on - strand at 891.347 kb on + strand at 891.350 kb on - strand at 891.355 kb on - strand at 891.406 kb on + strand at 891.414 kb on - strand at 891.415 kb on + strand at 891.435 kb on + strand at 891.440 kb on - strand at 891.744 kb on - strand, within PGA1_c08640 at 891.794 kb on - strand, within PGA1_c08640 at 891.920 kb on + strand, within PGA1_c08640 at 891.921 kb on - strand, within PGA1_c08640 at 891.922 kb on - strand, within PGA1_c08640 at 892.032 kb on + strand, within PGA1_c08640 at 892.032 kb on + strand, within PGA1_c08640 at 892.032 kb on + strand, within PGA1_c08640 at 892.032 kb on + strand, within PGA1_c08640 at 892.032 kb on + strand, within PGA1_c08640 at 892.032 kb on + strand, within PGA1_c08640 at 892.032 kb on + strand, within PGA1_c08640 at 892.032 kb on + strand, within PGA1_c08640 at 892.040 kb on - strand, within PGA1_c08640 at 892.040 kb on - strand, within PGA1_c08640 at 892.040 kb on - strand, within PGA1_c08640 at 892.040 kb on - strand, within PGA1_c08640 at 892.040 kb on - strand, within PGA1_c08640 at 892.040 kb on - strand, within PGA1_c08640 at 892.040 kb on - strand, within PGA1_c08640 at 892.047 kb on + strand, within PGA1_c08640 at 892.132 kb on + strand, within PGA1_c08640
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 888,536 + PGA1_c08600 0.90 +1.9 888,537 + PGA1_c08600 0.90 +0.9 888,592 - +1.9 888,635 + -1.2 888,636 - +1.3 888,677 - -1.5 888,695 - -1.4 888,723 + +0.2 888,723 + -0.6 888,723 + -1.3 888,723 + +1.2 888,731 - -0.7 888,769 - +1.1 888,769 - -0.1 888,843 + +1.1 888,843 + -0.1 888,851 - -0.1 888,857 - -2.2 888,885 - +0.5 888,893 - -0.5 888,893 - +1.1 889,183 + +0.8 889,183 + -1.5 889,490 + -0.8 889,491 + +0.7 889,506 - -0.7 889,527 + +1.1 891,332 + -1.2 891,332 + -2.5 891,332 + +0.8 891,332 + +2.2 891,340 - +1.3 891,347 + -0.7 891,350 - +0.3 891,355 - +2.4 891,406 + -1.4 891,414 - +0.2 891,415 + -1.5 891,435 + +0.9 891,440 - +0.7 891,744 - PGA1_c08640 0.33 +1.0 891,794 - PGA1_c08640 0.39 -0.4 891,920 + PGA1_c08640 0.51 +0.1 891,921 - PGA1_c08640 0.51 -1.8 891,922 - PGA1_c08640 0.52 +1.7 892,032 + PGA1_c08640 0.63 +1.3 892,032 + PGA1_c08640 0.63 +2.3 892,032 + PGA1_c08640 0.63 -0.8 892,032 + PGA1_c08640 0.63 +0.7 892,032 + PGA1_c08640 0.63 -1.5 892,032 + PGA1_c08640 0.63 +1.2 892,032 + PGA1_c08640 0.63 +0.7 892,032 + PGA1_c08640 0.63 +2.6 892,040 - PGA1_c08640 0.64 +0.5 892,040 - PGA1_c08640 0.64 -1.9 892,040 - PGA1_c08640 0.64 +0.7 892,040 - PGA1_c08640 0.64 +0.2 892,040 - PGA1_c08640 0.64 -0.7 892,040 - PGA1_c08640 0.64 +1.9 892,040 - PGA1_c08640 0.64 +1.1 892,047 + PGA1_c08640 0.64 +1.2 892,132 + PGA1_c08640 0.73 +1.4
Or see this region's nucleotide sequence