Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c08570

Experiment: m.b. Fusidic 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c08560 and PGA1_c08570 are separated by 222 nucleotidesPGA1_c08570 and PGA1_c08580 are separated by 93 nucleotides PGA1_c08560: PGA1_c08560 - hydrolase, HAD-superfamily, at 882,602 to 883,291 _c08560 PGA1_c08570: PGA1_c08570 - putative trimethylamine methyltransferase, at 883,514 to 885,073 _c08570 PGA1_c08580: PGA1_c08580 - hypothetical protein, at 885,167 to 886,957 _c08580 Position (kb) 883 884 885 886Strain fitness (log2 ratio) -2 -1 0 1 2 3at 882.525 kb on + strandat 882.539 kb on + strandat 882.560 kb on - strandat 882.567 kb on + strandat 882.567 kb on + strandat 882.575 kb on - strandat 882.575 kb on - strandat 882.575 kb on - strandat 882.592 kb on + strandat 882.593 kb on + strandat 882.606 kb on - strandat 882.639 kb on - strandat 882.668 kb on + strandat 882.692 kb on - strand, within PGA1_c08560at 882.849 kb on - strand, within PGA1_c08560at 882.898 kb on + strand, within PGA1_c08560at 882.898 kb on + strand, within PGA1_c08560at 882.946 kb on + strand, within PGA1_c08560at 882.952 kb on + strand, within PGA1_c08560at 882.960 kb on + strand, within PGA1_c08560at 882.960 kb on - strand, within PGA1_c08560at 883.019 kb on - strand, within PGA1_c08560at 883.019 kb on - strand, within PGA1_c08560at 883.210 kb on + strand, within PGA1_c08560at 883.210 kb on + strand, within PGA1_c08560at 883.210 kb on + strand, within PGA1_c08560at 883.210 kb on + strand, within PGA1_c08560at 883.218 kb on - strand, within PGA1_c08560at 883.218 kb on - strand, within PGA1_c08560at 883.308 kb on + strandat 883.308 kb on + strandat 883.422 kb on + strandat 883.430 kb on - strandat 883.496 kb on + strandat 883.496 kb on + strandat 883.499 kb on - strandat 883.513 kb on + strandat 883.605 kb on + strandat 883.618 kb on - strandat 883.620 kb on + strandat 883.640 kb on - strandat 883.715 kb on - strand, within PGA1_c08570at 883.746 kb on - strand, within PGA1_c08570at 883.759 kb on + strand, within PGA1_c08570at 883.759 kb on + strand, within PGA1_c08570at 883.760 kb on + strand, within PGA1_c08570at 883.781 kb on - strand, within PGA1_c08570at 883.851 kb on - strand, within PGA1_c08570at 883.851 kb on - strand, within PGA1_c08570at 883.942 kb on + strand, within PGA1_c08570at 884.066 kb on + strand, within PGA1_c08570at 884.100 kb on + strand, within PGA1_c08570at 884.142 kb on - strand, within PGA1_c08570at 884.180 kb on + strand, within PGA1_c08570at 884.182 kb on + strand, within PGA1_c08570at 884.188 kb on - strand, within PGA1_c08570at 884.301 kb on - strand, within PGA1_c08570at 884.328 kb on - strand, within PGA1_c08570at 884.355 kb on - strand, within PGA1_c08570at 884.398 kb on + strand, within PGA1_c08570at 884.515 kb on - strand, within PGA1_c08570at 884.543 kb on - strand, within PGA1_c08570at 884.556 kb on + strand, within PGA1_c08570at 884.640 kb on - strand, within PGA1_c08570at 884.796 kb on + strand, within PGA1_c08570at 884.852 kb on + strand, within PGA1_c08570at 884.860 kb on - strand, within PGA1_c08570at 884.860 kb on - strand, within PGA1_c08570at 884.862 kb on - strand, within PGA1_c08570at 884.875 kb on + strand, within PGA1_c08570at 884.875 kb on + strand, within PGA1_c08570at 884.905 kb on + strand, within PGA1_c08570at 884.906 kb on - strand, within PGA1_c08570at 884.963 kb on - strandat 884.975 kb on - strandat 884.991 kb on + strandat 885.079 kb on + strandat 885.099 kb on + strandat 885.099 kb on + strandat 885.130 kb on + strandat 885.136 kb on - strandat 885.138 kb on - strandat 885.138 kb on - strandat 885.283 kb on + strandat 885.487 kb on - strand, within PGA1_c08580at 885.618 kb on + strand, within PGA1_c08580at 885.632 kb on + strand, within PGA1_c08580at 885.652 kb on + strand, within PGA1_c08580at 885.652 kb on + strand, within PGA1_c08580at 885.652 kb on + strand, within PGA1_c08580at 885.826 kb on + strand, within PGA1_c08580at 885.917 kb on - strand, within PGA1_c08580at 885.947 kb on + strand, within PGA1_c08580at 885.947 kb on + strand, within PGA1_c08580at 885.952 kb on + strand, within PGA1_c08580at 885.957 kb on + strand, within PGA1_c08580at 885.960 kb on - strand, within PGA1_c08580at 885.960 kb on - strand, within PGA1_c08580at 885.965 kb on - strand, within PGA1_c08580at 885.965 kb on - strand, within PGA1_c08580at 886.061 kb on + strand, within PGA1_c08580at 886.069 kb on - strand, within PGA1_c08580

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml
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882,525 + +0.2
882,539 + -0.9
882,560 - +0.0
882,567 + -0.7
882,567 + -0.1
882,575 - +0.8
882,575 - -2.0
882,575 - +0.3
882,592 + +0.8
882,593 + -1.3
882,606 - +2.9
882,639 - -1.3
882,668 + -0.6
882,692 - PGA1_c08560 0.13 -1.1
882,849 - PGA1_c08560 0.36 +0.3
882,898 + PGA1_c08560 0.43 +0.1
882,898 + PGA1_c08560 0.43 +0.0
882,946 + PGA1_c08560 0.50 +1.3
882,952 + PGA1_c08560 0.51 -0.3
882,960 + PGA1_c08560 0.52 +1.4
882,960 - PGA1_c08560 0.52 -0.3
883,019 - PGA1_c08560 0.60 -0.1
883,019 - PGA1_c08560 0.60 +1.0
883,210 + PGA1_c08560 0.88 -0.3
883,210 + PGA1_c08560 0.88 -1.1
883,210 + PGA1_c08560 0.88 +0.8
883,210 + PGA1_c08560 0.88 +0.9
883,218 - PGA1_c08560 0.89 -0.4
883,218 - PGA1_c08560 0.89 -1.0
883,308 + +0.1
883,308 + +0.6
883,422 + +1.0
883,430 - -1.1
883,496 + +2.3
883,496 + -0.4
883,499 - -1.2
883,513 + -0.1
883,605 + +0.3
883,618 - +1.3
883,620 + -0.3
883,640 - -0.4
883,715 - PGA1_c08570 0.13 -1.3
883,746 - PGA1_c08570 0.15 +0.1
883,759 + PGA1_c08570 0.16 +0.2
883,759 + PGA1_c08570 0.16 -2.3
883,760 + PGA1_c08570 0.16 +0.1
883,781 - PGA1_c08570 0.17 -0.3
883,851 - PGA1_c08570 0.22 -0.6
883,851 - PGA1_c08570 0.22 -0.4
883,942 + PGA1_c08570 0.27 -0.8
884,066 + PGA1_c08570 0.35 +0.9
884,100 + PGA1_c08570 0.38 +0.7
884,142 - PGA1_c08570 0.40 -0.9
884,180 + PGA1_c08570 0.43 -1.3
884,182 + PGA1_c08570 0.43 +0.9
884,188 - PGA1_c08570 0.43 -2.3
884,301 - PGA1_c08570 0.50 +0.3
884,328 - PGA1_c08570 0.52 -0.7
884,355 - PGA1_c08570 0.54 -0.8
884,398 + PGA1_c08570 0.57 +0.7
884,515 - PGA1_c08570 0.64 +1.4
884,543 - PGA1_c08570 0.66 +0.2
884,556 + PGA1_c08570 0.67 -0.6
884,640 - PGA1_c08570 0.72 +1.3
884,796 + PGA1_c08570 0.82 -1.9
884,852 + PGA1_c08570 0.86 -1.4
884,860 - PGA1_c08570 0.86 -2.3
884,860 - PGA1_c08570 0.86 +0.5
884,862 - PGA1_c08570 0.86 +1.1
884,875 + PGA1_c08570 0.87 -0.4
884,875 + PGA1_c08570 0.87 -0.4
884,905 + PGA1_c08570 0.89 -0.5
884,906 - PGA1_c08570 0.89 +0.0
884,963 - -1.9
884,975 - -0.3
884,991 + +0.7
885,079 + -0.9
885,099 + -0.7
885,099 + -1.8
885,130 + -2.6
885,136 - -0.3
885,138 - -0.7
885,138 - +1.2
885,283 + +2.3
885,487 - PGA1_c08580 0.18 +3.2
885,618 + PGA1_c08580 0.25 -1.1
885,632 + PGA1_c08580 0.26 -1.7
885,652 + PGA1_c08580 0.27 -2.6
885,652 + PGA1_c08580 0.27 -0.4
885,652 + PGA1_c08580 0.27 +1.1
885,826 + PGA1_c08580 0.37 -1.0
885,917 - PGA1_c08580 0.42 -1.3
885,947 + PGA1_c08580 0.44 -0.1
885,947 + PGA1_c08580 0.44 +0.1
885,952 + PGA1_c08580 0.44 -1.4
885,957 + PGA1_c08580 0.44 +1.3
885,960 - PGA1_c08580 0.44 +1.9
885,960 - PGA1_c08580 0.44 +1.6
885,965 - PGA1_c08580 0.45 +0.3
885,965 - PGA1_c08580 0.45 +0.6
886,061 + PGA1_c08580 0.50 +0.7
886,069 - PGA1_c08580 0.50 -0.9

Or see this region's nucleotide sequence