Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c08330

Experiment: m.b. Fusidic 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c08320 and PGA1_c08330 are separated by 93 nucleotidesPGA1_c08330 and PGA1_c08340 are separated by 62 nucleotides PGA1_c08320: PGA1_c08320 - transcriptional regulator, LysR family, at 861,357 to 862,178 _c08320 PGA1_c08330: PGA1_c08330 - Predicted Zn-dependent hydrolases of the beta-lactamase fold, at 862,272 to 863,183 _c08330 PGA1_c08340: PGA1_c08340 - methionyl-tRNA synthetase MetG, at 863,246 to 864,973 _c08340 Position (kb) 862 863 864Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 861.326 kb on + strandat 861.366 kb on + strandat 861.366 kb on + strandat 861.366 kb on + strandat 861.367 kb on + strandat 861.374 kb on - strandat 861.377 kb on + strandat 861.425 kb on + strandat 861.436 kb on + strandat 861.438 kb on - strandat 861.444 kb on - strand, within PGA1_c08320at 861.453 kb on - strand, within PGA1_c08320at 861.545 kb on - strand, within PGA1_c08320at 861.547 kb on + strand, within PGA1_c08320at 861.555 kb on - strand, within PGA1_c08320at 861.582 kb on + strand, within PGA1_c08320at 861.735 kb on + strand, within PGA1_c08320at 861.735 kb on + strand, within PGA1_c08320at 861.743 kb on - strand, within PGA1_c08320at 861.755 kb on + strand, within PGA1_c08320at 861.800 kb on - strand, within PGA1_c08320at 861.803 kb on + strand, within PGA1_c08320at 861.803 kb on + strand, within PGA1_c08320at 861.805 kb on + strand, within PGA1_c08320at 861.811 kb on - strand, within PGA1_c08320at 861.850 kb on - strand, within PGA1_c08320at 861.868 kb on + strand, within PGA1_c08320at 861.868 kb on + strand, within PGA1_c08320at 861.921 kb on - strand, within PGA1_c08320at 862.055 kb on + strand, within PGA1_c08320at 862.063 kb on - strand, within PGA1_c08320at 862.097 kb on + strandat 862.097 kb on + strandat 862.118 kb on + strandat 862.128 kb on + strandat 862.152 kb on + strandat 862.152 kb on + strandat 862.215 kb on - strandat 862.215 kb on - strandat 862.238 kb on + strandat 862.238 kb on + strandat 862.239 kb on + strandat 862.247 kb on - strandat 862.262 kb on + strandat 862.287 kb on - strandat 862.305 kb on + strandat 862.305 kb on + strandat 862.305 kb on + strandat 862.305 kb on + strandat 862.313 kb on - strandat 862.313 kb on - strandat 862.313 kb on - strandat 862.313 kb on - strandat 862.313 kb on - strandat 862.313 kb on - strandat 862.313 kb on - strandat 862.313 kb on - strandat 862.313 kb on - strandat 862.313 kb on - strandat 862.313 kb on - strandat 862.313 kb on - strandat 862.313 kb on - strandat 862.313 kb on - strandat 862.313 kb on - strandat 862.313 kb on - strandat 862.313 kb on - strandat 862.313 kb on - strandat 862.313 kb on - strandat 862.313 kb on - strandat 862.313 kb on - strandat 862.313 kb on - strandat 862.313 kb on - strandat 862.313 kb on - strandat 862.336 kb on - strandat 862.380 kb on - strand, within PGA1_c08330at 862.432 kb on + strand, within PGA1_c08330at 862.440 kb on - strand, within PGA1_c08330at 862.452 kb on - strand, within PGA1_c08330at 862.555 kb on + strand, within PGA1_c08330at 862.560 kb on + strand, within PGA1_c08330at 862.569 kb on + strand, within PGA1_c08330at 862.608 kb on + strand, within PGA1_c08330at 862.613 kb on + strand, within PGA1_c08330at 862.613 kb on + strand, within PGA1_c08330at 862.621 kb on - strand, within PGA1_c08330at 862.621 kb on - strand, within PGA1_c08330at 862.621 kb on - strand, within PGA1_c08330at 862.621 kb on - strand, within PGA1_c08330at 862.622 kb on - strand, within PGA1_c08330at 862.657 kb on + strand, within PGA1_c08330at 862.729 kb on + strand, within PGA1_c08330at 862.740 kb on + strand, within PGA1_c08330at 862.781 kb on + strand, within PGA1_c08330at 862.813 kb on + strand, within PGA1_c08330at 862.856 kb on + strand, within PGA1_c08330at 862.864 kb on - strand, within PGA1_c08330at 862.902 kb on + strand, within PGA1_c08330at 862.917 kb on - strand, within PGA1_c08330at 862.932 kb on + strand, within PGA1_c08330at 863.081 kb on + strand, within PGA1_c08330at 863.081 kb on + strand, within PGA1_c08330at 863.086 kb on + strand, within PGA1_c08330at 863.094 kb on - strandat 863.094 kb on - strandat 863.094 kb on - strandat 863.127 kb on - strandat 863.220 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml
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861,326 + -2.8
861,366 + -0.9
861,366 + -0.1
861,366 + -1.4
861,367 + -0.9
861,374 - -1.5
861,377 + -0.4
861,425 + +2.6
861,436 + -0.3
861,438 - +1.3
861,444 - PGA1_c08320 0.11 +0.9
861,453 - PGA1_c08320 0.12 -1.1
861,545 - PGA1_c08320 0.23 +2.2
861,547 + PGA1_c08320 0.23 -0.4
861,555 - PGA1_c08320 0.24 -0.1
861,582 + PGA1_c08320 0.27 -0.1
861,735 + PGA1_c08320 0.46 +2.5
861,735 + PGA1_c08320 0.46 +1.1
861,743 - PGA1_c08320 0.47 +0.3
861,755 + PGA1_c08320 0.48 +0.9
861,800 - PGA1_c08320 0.54 -0.1
861,803 + PGA1_c08320 0.54 -1.4
861,803 + PGA1_c08320 0.54 -1.9
861,805 + PGA1_c08320 0.55 +0.7
861,811 - PGA1_c08320 0.55 +1.2
861,850 - PGA1_c08320 0.60 -1.2
861,868 + PGA1_c08320 0.62 -0.7
861,868 + PGA1_c08320 0.62 +1.1
861,921 - PGA1_c08320 0.69 -2.0
862,055 + PGA1_c08320 0.85 -0.8
862,063 - PGA1_c08320 0.86 -1.5
862,097 + +0.4
862,097 + +0.3
862,118 + +0.6
862,128 + +1.9
862,152 + +0.2
862,152 + -1.1
862,215 - +3.1
862,215 - +0.7
862,238 + +1.6
862,238 + +1.9
862,239 + -0.2
862,247 - +0.3
862,262 + +2.9
862,287 - -1.4
862,305 + -0.9
862,305 + +1.3
862,305 + -0.4
862,305 + -0.1
862,313 - -1.8
862,313 - +2.0
862,313 - -0.4
862,313 - +0.9
862,313 - +0.5
862,313 - -0.7
862,313 - -1.3
862,313 - +0.3
862,313 - +0.6
862,313 - -0.1
862,313 - +0.9
862,313 - +0.5
862,313 - -0.9
862,313 - +1.9
862,313 - -0.4
862,313 - -0.9
862,313 - +1.9
862,313 - -0.1
862,313 - -1.1
862,313 - +0.6
862,313 - -0.1
862,313 - -0.9
862,313 - -0.1
862,313 - +0.9
862,336 - +0.1
862,380 - PGA1_c08330 0.12 +0.5
862,432 + PGA1_c08330 0.18 +0.0
862,440 - PGA1_c08330 0.18 -0.9
862,452 - PGA1_c08330 0.20 +0.6
862,555 + PGA1_c08330 0.31 -1.1
862,560 + PGA1_c08330 0.32 +0.2
862,569 + PGA1_c08330 0.33 -1.5
862,608 + PGA1_c08330 0.37 +2.1
862,613 + PGA1_c08330 0.37 -0.1
862,613 + PGA1_c08330 0.37 +1.0
862,621 - PGA1_c08330 0.38 -0.7
862,621 - PGA1_c08330 0.38 +0.2
862,621 - PGA1_c08330 0.38 -0.7
862,621 - PGA1_c08330 0.38 +1.5
862,622 - PGA1_c08330 0.38 -0.1
862,657 + PGA1_c08330 0.42 -0.4
862,729 + PGA1_c08330 0.50 +0.7
862,740 + PGA1_c08330 0.51 +0.3
862,781 + PGA1_c08330 0.56 -0.3
862,813 + PGA1_c08330 0.59 +0.9
862,856 + PGA1_c08330 0.64 +0.3
862,864 - PGA1_c08330 0.65 +0.3
862,902 + PGA1_c08330 0.69 +1.5
862,917 - PGA1_c08330 0.71 -0.4
862,932 + PGA1_c08330 0.72 +1.5
863,081 + PGA1_c08330 0.89 -0.7
863,081 + PGA1_c08330 0.89 -0.7
863,086 + PGA1_c08330 0.89 -0.9
863,094 - +0.2
863,094 - +1.1
863,094 - +0.4
863,127 - +3.5
863,220 - -1.1

Or see this region's nucleotide sequence