Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c07120

Experiment: m.b. Fusidic 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c07110 and PGA1_c07120 are separated by 19 nucleotidesPGA1_c07120 and PGA1_c07130 are separated by 147 nucleotidesPGA1_c07130 and PGA1_c07140 are separated by 4 nucleotides PGA1_c07110: PGA1_c07110 - putative sodium/alanine symporter, at 731,116 to 732,660 _c07110 PGA1_c07120: PGA1_c07120 - putative universal stress protein, at 732,680 to 733,114 _c07120 PGA1_c07130: PGA1_c07130 - putative leucine-responsive regulatory protein, at 733,262 to 733,717 _c07130 PGA1_c07140: PGA1_c07140 - putative methylamine utilization protein MauG, at 733,722 to 734,975 _c07140 Position (kb) 732 733 734Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 731.869 kb on + strand, within PGA1_c07110at 731.876 kb on + strand, within PGA1_c07110at 731.876 kb on + strand, within PGA1_c07110at 731.884 kb on - strand, within PGA1_c07110at 732.108 kb on + strand, within PGA1_c07110at 732.198 kb on + strand, within PGA1_c07110at 732.206 kb on - strand, within PGA1_c07110at 732.229 kb on + strand, within PGA1_c07110at 732.229 kb on + strand, within PGA1_c07110at 732.229 kb on + strand, within PGA1_c07110at 732.237 kb on - strand, within PGA1_c07110at 732.237 kb on - strand, within PGA1_c07110at 732.332 kb on + strand, within PGA1_c07110at 732.353 kb on + strand, within PGA1_c07110at 732.358 kb on + strand, within PGA1_c07110at 732.358 kb on + strand, within PGA1_c07110at 732.378 kb on + strand, within PGA1_c07110at 732.400 kb on - strand, within PGA1_c07110at 732.438 kb on + strand, within PGA1_c07110at 732.438 kb on + strand, within PGA1_c07110at 732.628 kb on + strandat 732.653 kb on + strandat 732.655 kb on + strandat 732.685 kb on + strandat 732.685 kb on + strandat 732.703 kb on - strandat 732.711 kb on + strandat 732.818 kb on + strand, within PGA1_c07120at 732.826 kb on - strand, within PGA1_c07120at 732.826 kb on - strand, within PGA1_c07120at 732.828 kb on - strand, within PGA1_c07120at 732.870 kb on - strand, within PGA1_c07120at 732.870 kb on - strand, within PGA1_c07120at 732.897 kb on + strand, within PGA1_c07120at 733.034 kb on - strand, within PGA1_c07120at 733.046 kb on - strand, within PGA1_c07120at 733.121 kb on + strandat 733.123 kb on + strandat 733.128 kb on + strandat 733.131 kb on - strandat 733.356 kb on - strand, within PGA1_c07130at 733.356 kb on - strand, within PGA1_c07130at 733.371 kb on - strand, within PGA1_c07130at 733.435 kb on + strand, within PGA1_c07130at 733.440 kb on + strand, within PGA1_c07130at 733.440 kb on + strand, within PGA1_c07130at 733.448 kb on - strand, within PGA1_c07130at 733.448 kb on - strand, within PGA1_c07130at 733.527 kb on + strand, within PGA1_c07130at 733.527 kb on + strand, within PGA1_c07130at 733.535 kb on - strand, within PGA1_c07130at 733.543 kb on - strand, within PGA1_c07130at 733.596 kb on + strand, within PGA1_c07130at 733.604 kb on - strand, within PGA1_c07130at 733.639 kb on + strand, within PGA1_c07130at 733.657 kb on + strand, within PGA1_c07130at 733.657 kb on + strand, within PGA1_c07130at 733.657 kb on + strand, within PGA1_c07130at 733.657 kb on + strand, within PGA1_c07130at 733.657 kb on + strand, within PGA1_c07130at 733.657 kb on + strand, within PGA1_c07130at 733.657 kb on + strand, within PGA1_c07130at 733.665 kb on - strand, within PGA1_c07130at 733.665 kb on - strand, within PGA1_c07130at 733.665 kb on - strand, within PGA1_c07130at 733.665 kb on - strand, within PGA1_c07130at 733.665 kb on - strand, within PGA1_c07130at 733.669 kb on + strand, within PGA1_c07130at 733.759 kb on + strandat 733.765 kb on + strandat 733.775 kb on - strandat 733.775 kb on - strandat 733.798 kb on + strandat 733.819 kb on - strandat 733.819 kb on - strandat 733.825 kb on - strandat 733.842 kb on - strandat 733.842 kb on - strandat 733.846 kb on - strandat 733.848 kb on + strand, within PGA1_c07140at 733.853 kb on + strand, within PGA1_c07140at 733.853 kb on + strand, within PGA1_c07140at 733.861 kb on - strand, within PGA1_c07140at 733.904 kb on + strand, within PGA1_c07140at 733.934 kb on + strand, within PGA1_c07140at 733.942 kb on - strand, within PGA1_c07140at 733.942 kb on - strand, within PGA1_c07140at 733.949 kb on + strand, within PGA1_c07140at 733.949 kb on + strand, within PGA1_c07140at 733.965 kb on - strand, within PGA1_c07140at 733.994 kb on + strand, within PGA1_c07140at 734.002 kb on - strand, within PGA1_c07140at 734.023 kb on + strand, within PGA1_c07140

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml
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731,869 + PGA1_c07110 0.49 -0.3
731,876 + PGA1_c07110 0.49 +0.1
731,876 + PGA1_c07110 0.49 +1.2
731,884 - PGA1_c07110 0.50 +0.9
732,108 + PGA1_c07110 0.64 +0.7
732,198 + PGA1_c07110 0.70 -0.1
732,206 - PGA1_c07110 0.71 +0.0
732,229 + PGA1_c07110 0.72 +1.1
732,229 + PGA1_c07110 0.72 +0.2
732,229 + PGA1_c07110 0.72 +0.4
732,237 - PGA1_c07110 0.73 +2.1
732,237 - PGA1_c07110 0.73 -1.4
732,332 + PGA1_c07110 0.79 -0.0
732,353 + PGA1_c07110 0.80 +0.5
732,358 + PGA1_c07110 0.80 -0.3
732,358 + PGA1_c07110 0.80 -0.0
732,378 + PGA1_c07110 0.82 -1.1
732,400 - PGA1_c07110 0.83 -0.5
732,438 + PGA1_c07110 0.86 +0.8
732,438 + PGA1_c07110 0.86 +1.2
732,628 + +1.6
732,653 + -0.8
732,655 + -1.4
732,685 + +0.6
732,685 + +1.0
732,703 - -0.9
732,711 + +0.7
732,818 + PGA1_c07120 0.32 +1.0
732,826 - PGA1_c07120 0.34 -3.0
732,826 - PGA1_c07120 0.34 +0.2
732,828 - PGA1_c07120 0.34 +0.8
732,870 - PGA1_c07120 0.44 +3.2
732,870 - PGA1_c07120 0.44 +1.9
732,897 + PGA1_c07120 0.50 +0.7
733,034 - PGA1_c07120 0.81 +2.2
733,046 - PGA1_c07120 0.84 -1.0
733,121 + -2.8
733,123 + -0.8
733,128 + +0.0
733,131 - +0.6
733,356 - PGA1_c07130 0.21 +0.6
733,356 - PGA1_c07130 0.21 +1.1
733,371 - PGA1_c07130 0.24 -0.9
733,435 + PGA1_c07130 0.38 +0.7
733,440 + PGA1_c07130 0.39 -1.6
733,440 + PGA1_c07130 0.39 -0.4
733,448 - PGA1_c07130 0.41 -2.0
733,448 - PGA1_c07130 0.41 +1.0
733,527 + PGA1_c07130 0.58 -0.4
733,527 + PGA1_c07130 0.58 -0.4
733,535 - PGA1_c07130 0.60 -1.1
733,543 - PGA1_c07130 0.62 +1.6
733,596 + PGA1_c07130 0.73 +0.4
733,604 - PGA1_c07130 0.75 +1.7
733,639 + PGA1_c07130 0.83 +0.7
733,657 + PGA1_c07130 0.87 -0.8
733,657 + PGA1_c07130 0.87 -0.4
733,657 + PGA1_c07130 0.87 -0.4
733,657 + PGA1_c07130 0.87 +0.7
733,657 + PGA1_c07130 0.87 +0.4
733,657 + PGA1_c07130 0.87 -0.4
733,657 + PGA1_c07130 0.87 +0.9
733,665 - PGA1_c07130 0.88 +0.3
733,665 - PGA1_c07130 0.88 -0.4
733,665 - PGA1_c07130 0.88 -0.1
733,665 - PGA1_c07130 0.88 -0.8
733,665 - PGA1_c07130 0.88 +1.0
733,669 + PGA1_c07130 0.89 -0.3
733,759 + -0.5
733,765 + -0.9
733,775 - +0.9
733,775 - -1.8
733,798 + -0.0
733,819 - +0.2
733,819 - +0.7
733,825 - -1.0
733,842 - -1.3
733,842 - +0.1
733,846 - -0.5
733,848 + PGA1_c07140 0.10 +0.7
733,853 + PGA1_c07140 0.10 +0.9
733,853 + PGA1_c07140 0.10 +0.9
733,861 - PGA1_c07140 0.11 -1.7
733,904 + PGA1_c07140 0.15 +1.7
733,934 + PGA1_c07140 0.17 +1.0
733,942 - PGA1_c07140 0.18 -1.2
733,942 - PGA1_c07140 0.18 +0.5
733,949 + PGA1_c07140 0.18 +1.6
733,949 + PGA1_c07140 0.18 +0.5
733,965 - PGA1_c07140 0.19 +0.6
733,994 + PGA1_c07140 0.22 +0.3
734,002 - PGA1_c07140 0.22 -2.2
734,023 + PGA1_c07140 0.24 -0.1

Or see this region's nucleotide sequence