Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c06780 and PGA1_c06790 are separated by 112 nucleotides
PGA1_c06780: PGA1_c06780 - putative extracellular solute-binding protein, at 697,465 to 699,045
_c06780
PGA1_c06790: PGA1_c06790 - putative peptide ABC transporter, permease protein, at 699,158 to 700,138
_c06790
Position (kb) 697
698
699
700 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 696.479 kb on + strand at 696.492 kb on + strand at 696.492 kb on + strand at 696.495 kb on - strand at 696.500 kb on - strand at 696.500 kb on - strand at 696.537 kb on + strand at 696.537 kb on + strand at 696.537 kb on + strand at 696.537 kb on + strand at 696.537 kb on + strand at 696.537 kb on + strand at 696.537 kb on + strand at 696.537 kb on + strand at 696.545 kb on - strand at 696.545 kb on - strand at 696.545 kb on - strand at 696.545 kb on - strand at 696.545 kb on - strand at 696.545 kb on - strand at 696.545 kb on - strand at 696.545 kb on - strand at 696.545 kb on - strand at 696.550 kb on - strand at 696.575 kb on - strand at 696.594 kb on + strand at 696.596 kb on + strand at 696.598 kb on + strand at 696.598 kb on + strand at 696.602 kb on - strand at 696.604 kb on + strand at 696.606 kb on - strand at 696.606 kb on - strand at 696.675 kb on + strand at 696.721 kb on + strand at 696.727 kb on + strand at 696.727 kb on + strand at 696.729 kb on - strand at 696.735 kb on - strand at 696.737 kb on + strand at 696.796 kb on + strand at 696.804 kb on - strand at 696.817 kb on - strand at 696.853 kb on - strand at 696.855 kb on + strand at 696.855 kb on + strand at 696.855 kb on + strand at 696.863 kb on - strand at 696.901 kb on - strand at 696.912 kb on + strand at 696.912 kb on + strand at 696.920 kb on + strand at 696.922 kb on + strand at 696.969 kb on - strand at 696.999 kb on - strand at 696.999 kb on - strand at 697.050 kb on + strand at 697.050 kb on + strand at 697.134 kb on + strand at 697.147 kb on + strand at 697.158 kb on - strand at 697.158 kb on - strand at 697.180 kb on - strand at 697.195 kb on - strand at 697.200 kb on - strand at 697.277 kb on + strand at 697.295 kb on - strand at 697.298 kb on + strand at 697.298 kb on + strand at 697.306 kb on - strand at 697.342 kb on - strand at 697.342 kb on - strand at 697.354 kb on + strand at 697.361 kb on + strand at 697.380 kb on + strand at 697.393 kb on - strand at 697.425 kb on + strand at 697.493 kb on - strand at 697.493 kb on - strand at 697.505 kb on + strand at 697.549 kb on + strand at 697.564 kb on - strand at 697.576 kb on - strand at 697.576 kb on - strand at 697.580 kb on - strand at 697.587 kb on + strand at 697.594 kb on + strand at 697.656 kb on - strand, within PGA1_c06780 at 697.661 kb on - strand, within PGA1_c06780 at 697.662 kb on + strand, within PGA1_c06780 at 697.678 kb on + strand, within PGA1_c06780 at 697.690 kb on - strand, within PGA1_c06780 at 697.718 kb on + strand, within PGA1_c06780 at 697.728 kb on + strand, within PGA1_c06780 at 697.754 kb on - strand, within PGA1_c06780 at 697.759 kb on + strand, within PGA1_c06780 at 697.767 kb on - strand, within PGA1_c06780 at 697.782 kb on - strand, within PGA1_c06780 at 697.861 kb on + strand, within PGA1_c06780 at 697.861 kb on + strand, within PGA1_c06780 at 697.866 kb on + strand, within PGA1_c06780 at 697.892 kb on + strand, within PGA1_c06780 at 697.892 kb on + strand, within PGA1_c06780 at 697.926 kb on + strand, within PGA1_c06780 at 697.934 kb on - strand, within PGA1_c06780 at 697.947 kb on - strand, within PGA1_c06780 at 698.027 kb on + strand, within PGA1_c06780 at 698.032 kb on + strand, within PGA1_c06780 at 698.035 kb on - strand, within PGA1_c06780 at 698.035 kb on - strand, within PGA1_c06780 at 698.036 kb on + strand, within PGA1_c06780 at 698.036 kb on + strand, within PGA1_c06780 at 698.044 kb on - strand, within PGA1_c06780 at 698.044 kb on - strand, within PGA1_c06780 at 698.044 kb on - strand, within PGA1_c06780 at 698.044 kb on - strand, within PGA1_c06780 at 698.057 kb on + strand, within PGA1_c06780 at 698.096 kb on + strand, within PGA1_c06780 at 698.102 kb on + strand, within PGA1_c06780 at 698.120 kb on - strand, within PGA1_c06780 at 698.197 kb on + strand, within PGA1_c06780 at 698.218 kb on + strand, within PGA1_c06780 at 698.243 kb on + strand, within PGA1_c06780 at 698.257 kb on + strand, within PGA1_c06780 at 698.260 kb on - strand, within PGA1_c06780 at 698.260 kb on - strand, within PGA1_c06780 at 698.260 kb on - strand, within PGA1_c06780 at 698.260 kb on - strand, within PGA1_c06780 at 698.260 kb on - strand, within PGA1_c06780 at 698.260 kb on - strand, within PGA1_c06780 at 698.269 kb on + strand, within PGA1_c06780 at 698.270 kb on - strand, within PGA1_c06780 at 698.272 kb on + strand, within PGA1_c06780 at 698.272 kb on + strand, within PGA1_c06780 at 698.280 kb on - strand, within PGA1_c06780 at 698.280 kb on - strand, within PGA1_c06780 at 698.302 kb on + strand, within PGA1_c06780 at 698.309 kb on - strand, within PGA1_c06780 at 698.377 kb on + strand, within PGA1_c06780 at 698.498 kb on - strand, within PGA1_c06780 at 698.541 kb on + strand, within PGA1_c06780 at 698.636 kb on - strand, within PGA1_c06780 at 698.643 kb on + strand, within PGA1_c06780 at 698.673 kb on + strand, within PGA1_c06780 at 698.705 kb on - strand, within PGA1_c06780 at 698.720 kb on + strand, within PGA1_c06780 at 698.730 kb on + strand, within PGA1_c06780 at 698.730 kb on + strand, within PGA1_c06780 at 698.730 kb on + strand, within PGA1_c06780 at 698.730 kb on + strand, within PGA1_c06780 at 698.730 kb on + strand, within PGA1_c06780 at 698.735 kb on + strand, within PGA1_c06780 at 698.738 kb on - strand, within PGA1_c06780 at 698.738 kb on - strand, within PGA1_c06780 at 698.738 kb on - strand, within PGA1_c06780 at 698.738 kb on - strand, within PGA1_c06780 at 698.738 kb on - strand, within PGA1_c06780 at 698.738 kb on - strand, within PGA1_c06780 at 698.738 kb on - strand, within PGA1_c06780 at 698.740 kb on + strand, within PGA1_c06780 at 698.740 kb on + strand, within PGA1_c06780 at 698.748 kb on - strand, within PGA1_c06780 at 698.748 kb on - strand, within PGA1_c06780 at 698.772 kb on - strand, within PGA1_c06780 at 698.805 kb on - strand, within PGA1_c06780 at 698.815 kb on + strand, within PGA1_c06780 at 698.844 kb on - strand, within PGA1_c06780 at 698.897 kb on - strand at 698.927 kb on + strand at 698.937 kb on - strand at 698.961 kb on + strand at 698.966 kb on + strand at 698.967 kb on - strand at 698.972 kb on - strand at 699.004 kb on + strand at 699.022 kb on - strand at 699.063 kb on + strand at 699.068 kb on + strand at 699.068 kb on + strand at 699.068 kb on + strand at 699.068 kb on + strand at 699.068 kb on + strand at 699.068 kb on + strand at 699.068 kb on + strand at 699.076 kb on - strand at 699.076 kb on - strand at 699.076 kb on - strand at 699.076 kb on - strand at 699.076 kb on - strand at 699.112 kb on + strand at 699.158 kb on + strand at 699.158 kb on + strand at 699.158 kb on + strand at 699.180 kb on + strand at 699.185 kb on + strand at 699.185 kb on + strand at 699.265 kb on - strand, within PGA1_c06790 at 699.277 kb on + strand, within PGA1_c06790 at 699.287 kb on + strand, within PGA1_c06790 at 699.305 kb on - strand, within PGA1_c06790 at 699.334 kb on - strand, within PGA1_c06790 at 699.349 kb on - strand, within PGA1_c06790 at 699.384 kb on - strand, within PGA1_c06790 at 699.429 kb on - strand, within PGA1_c06790 at 699.429 kb on - strand, within PGA1_c06790 at 699.431 kb on - strand, within PGA1_c06790 at 699.431 kb on - strand, within PGA1_c06790 at 699.431 kb on - strand, within PGA1_c06790 at 699.447 kb on + strand, within PGA1_c06790 at 699.471 kb on - strand, within PGA1_c06790 at 699.508 kb on + strand, within PGA1_c06790 at 699.516 kb on - strand, within PGA1_c06790 at 699.521 kb on - strand, within PGA1_c06790 at 699.578 kb on + strand, within PGA1_c06790 at 699.636 kb on + strand, within PGA1_c06790 at 699.669 kb on + strand, within PGA1_c06790 at 699.678 kb on - strand, within PGA1_c06790 at 699.708 kb on + strand, within PGA1_c06790 at 699.732 kb on + strand, within PGA1_c06790 at 699.738 kb on + strand, within PGA1_c06790 at 699.744 kb on + strand, within PGA1_c06790 at 699.744 kb on + strand, within PGA1_c06790 at 699.744 kb on + strand, within PGA1_c06790 at 699.744 kb on + strand, within PGA1_c06790 at 699.746 kb on - strand, within PGA1_c06790 at 699.752 kb on - strand, within PGA1_c06790 at 699.752 kb on - strand, within PGA1_c06790 at 699.752 kb on - strand, within PGA1_c06790 at 699.822 kb on - strand, within PGA1_c06790 at 699.874 kb on + strand, within PGA1_c06790 at 699.874 kb on + strand, within PGA1_c06790 at 699.877 kb on - strand, within PGA1_c06790 at 699.879 kb on + strand, within PGA1_c06790 at 699.882 kb on + strand, within PGA1_c06790 at 699.882 kb on - strand, within PGA1_c06790 at 699.882 kb on - strand, within PGA1_c06790 at 699.887 kb on - strand, within PGA1_c06790 at 699.908 kb on - strand, within PGA1_c06790 at 699.972 kb on + strand, within PGA1_c06790 at 699.972 kb on + strand, within PGA1_c06790 at 699.972 kb on + strand, within PGA1_c06790 at 699.972 kb on + strand, within PGA1_c06790 at 699.980 kb on - strand, within PGA1_c06790 at 699.982 kb on + strand, within PGA1_c06790 at 700.007 kb on + strand, within PGA1_c06790
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 696,479 + -0.6 696,492 + -1.6 696,492 + +0.5 696,495 - +0.9 696,500 - +1.9 696,500 - -0.1 696,537 + +0.8 696,537 + -0.1 696,537 + -2.4 696,537 + -1.4 696,537 + -1.1 696,537 + +0.5 696,537 + -0.6 696,537 + +0.9 696,545 - +0.6 696,545 - +0.9 696,545 - +2.5 696,545 - +0.4 696,545 - +0.4 696,545 - +1.9 696,545 - -0.1 696,545 - +0.9 696,545 - +0.9 696,550 - +1.9 696,575 - +0.4 696,594 + -0.1 696,596 + +0.7 696,598 + +0.7 696,598 + -0.6 696,602 - +0.6 696,604 + +0.4 696,606 - +2.9 696,606 - +0.4 696,675 + +1.9 696,721 + +0.4 696,727 + -1.8 696,727 + -2.2 696,729 - -0.9 696,735 - -0.6 696,737 + -1.9 696,796 + -0.1 696,804 - +0.5 696,817 - -1.6 696,853 - -0.1 696,855 + -0.1 696,855 + +1.3 696,855 + -1.6 696,863 - -0.8 696,901 - -1.6 696,912 + -2.4 696,912 + +0.9 696,920 + +0.5 696,922 + +0.1 696,969 - +0.4 696,999 - -0.4 696,999 - +0.5 697,050 + +0.4 697,050 + -1.1 697,134 + -0.6 697,147 + +0.9 697,158 - +0.6 697,158 - +0.8 697,180 - -1.4 697,195 - -0.6 697,200 - -1.0 697,277 + -0.1 697,295 - -1.1 697,298 + +0.3 697,298 + +0.4 697,306 - -1.5 697,342 - -0.3 697,342 - +0.4 697,354 + -0.6 697,361 + +0.6 697,380 + -1.4 697,393 - -0.8 697,425 + +0.6 697,493 - -0.6 697,493 - -0.1 697,505 + +0.4 697,549 + -0.1 697,564 - +0.7 697,576 - +0.4 697,576 - +0.9 697,580 - -0.4 697,587 + -0.6 697,594 + -1.2 697,656 - PGA1_c06780 0.12 +3.3 697,661 - PGA1_c06780 0.12 -1.4 697,662 + PGA1_c06780 0.12 +2.5 697,678 + PGA1_c06780 0.13 +1.0 697,690 - PGA1_c06780 0.14 -1.6 697,718 + PGA1_c06780 0.16 -2.1 697,728 + PGA1_c06780 0.17 +1.9 697,754 - PGA1_c06780 0.18 +1.4 697,759 + PGA1_c06780 0.19 -0.9 697,767 - PGA1_c06780 0.19 -0.9 697,782 - PGA1_c06780 0.20 -0.4 697,861 + PGA1_c06780 0.25 +0.5 697,861 + PGA1_c06780 0.25 -0.4 697,866 + PGA1_c06780 0.25 -1.4 697,892 + PGA1_c06780 0.27 -0.1 697,892 + PGA1_c06780 0.27 +0.9 697,926 + PGA1_c06780 0.29 -0.6 697,934 - PGA1_c06780 0.30 -0.2 697,947 - PGA1_c06780 0.30 -0.6 698,027 + PGA1_c06780 0.36 -1.1 698,032 + PGA1_c06780 0.36 -1.9 698,035 - PGA1_c06780 0.36 +0.6 698,035 - PGA1_c06780 0.36 -0.8 698,036 + PGA1_c06780 0.36 +0.9 698,036 + PGA1_c06780 0.36 +1.4 698,044 - PGA1_c06780 0.37 -0.8 698,044 - PGA1_c06780 0.37 +0.4 698,044 - PGA1_c06780 0.37 -0.2 698,044 - PGA1_c06780 0.37 -0.6 698,057 + PGA1_c06780 0.37 -0.4 698,096 + PGA1_c06780 0.40 +0.2 698,102 + PGA1_c06780 0.40 -1.5 698,120 - PGA1_c06780 0.41 +1.4 698,197 + PGA1_c06780 0.46 +1.3 698,218 + PGA1_c06780 0.48 -1.6 698,243 + PGA1_c06780 0.49 -1.1 698,257 + PGA1_c06780 0.50 +0.9 698,260 - PGA1_c06780 0.50 +0.9 698,260 - PGA1_c06780 0.50 +1.4 698,260 - PGA1_c06780 0.50 -0.6 698,260 - PGA1_c06780 0.50 -1.4 698,260 - PGA1_c06780 0.50 -1.1 698,260 - PGA1_c06780 0.50 +0.9 698,269 + PGA1_c06780 0.51 -0.5 698,270 - PGA1_c06780 0.51 +2.5 698,272 + PGA1_c06780 0.51 +0.5 698,272 + PGA1_c06780 0.51 -0.8 698,280 - PGA1_c06780 0.52 -0.3 698,280 - PGA1_c06780 0.52 +0.5 698,302 + PGA1_c06780 0.53 -0.4 698,309 - PGA1_c06780 0.53 -0.1 698,377 + PGA1_c06780 0.58 -1.2 698,498 - PGA1_c06780 0.65 -1.6 698,541 + PGA1_c06780 0.68 -1.2 698,636 - PGA1_c06780 0.74 -0.9 698,643 + PGA1_c06780 0.75 -0.4 698,673 + PGA1_c06780 0.76 -2.3 698,705 - PGA1_c06780 0.78 -1.2 698,720 + PGA1_c06780 0.79 -0.4 698,730 + PGA1_c06780 0.80 -0.1 698,730 + PGA1_c06780 0.80 -0.1 698,730 + PGA1_c06780 0.80 -0.1 698,730 + PGA1_c06780 0.80 -1.2 698,730 + PGA1_c06780 0.80 +0.4 698,735 + PGA1_c06780 0.80 -0.6 698,738 - PGA1_c06780 0.81 +0.4 698,738 - PGA1_c06780 0.81 +1.9 698,738 - PGA1_c06780 0.81 +0.2 698,738 - PGA1_c06780 0.81 -0.9 698,738 - PGA1_c06780 0.81 -0.1 698,738 - PGA1_c06780 0.81 +0.4 698,738 - PGA1_c06780 0.81 -0.4 698,740 + PGA1_c06780 0.81 -1.1 698,740 + PGA1_c06780 0.81 -1.9 698,748 - PGA1_c06780 0.81 -0.1 698,748 - PGA1_c06780 0.81 -0.4 698,772 - PGA1_c06780 0.83 +0.8 698,805 - PGA1_c06780 0.85 +0.9 698,815 + PGA1_c06780 0.85 +0.5 698,844 - PGA1_c06780 0.87 -1.1 698,897 - +0.6 698,927 + -1.9 698,937 - -1.9 698,961 + -1.5 698,966 + +2.0 698,967 - +1.3 698,972 - -1.2 699,004 + +1.0 699,022 - +1.8 699,063 + -0.9 699,068 + +0.6 699,068 + +0.1 699,068 + -0.6 699,068 + -0.5 699,068 + +1.0 699,068 + -0.0 699,068 + +0.4 699,076 - +0.4 699,076 - +2.0 699,076 - -0.0 699,076 - -2.6 699,076 - -0.0 699,112 + +0.1 699,158 + +1.7 699,158 + +1.5 699,158 + +0.1 699,180 + -0.7 699,185 + +1.2 699,185 + -1.2 699,265 - PGA1_c06790 0.11 -0.9 699,277 + PGA1_c06790 0.12 +2.0 699,287 + PGA1_c06790 0.13 +1.5 699,305 - PGA1_c06790 0.15 -0.9 699,334 - PGA1_c06790 0.18 -1.2 699,349 - PGA1_c06790 0.19 +1.1 699,384 - PGA1_c06790 0.23 +0.8 699,429 - PGA1_c06790 0.28 +1.4 699,429 - PGA1_c06790 0.28 +0.5 699,431 - PGA1_c06790 0.28 -2.4 699,431 - PGA1_c06790 0.28 +1.4 699,431 - PGA1_c06790 0.28 -0.6 699,447 + PGA1_c06790 0.29 +1.2 699,471 - PGA1_c06790 0.32 -0.0 699,508 + PGA1_c06790 0.36 +0.7 699,516 - PGA1_c06790 0.36 +1.0 699,521 - PGA1_c06790 0.37 +3.0 699,578 + PGA1_c06790 0.43 +2.0 699,636 + PGA1_c06790 0.49 -0.5 699,669 + PGA1_c06790 0.52 -2.1 699,678 - PGA1_c06790 0.53 +0.4 699,708 + PGA1_c06790 0.56 -0.3 699,732 + PGA1_c06790 0.59 +0.5 699,738 + PGA1_c06790 0.59 -1.0 699,744 + PGA1_c06790 0.60 +0.6 699,744 + PGA1_c06790 0.60 +0.2 699,744 + PGA1_c06790 0.60 +0.4 699,744 + PGA1_c06790 0.60 +0.3 699,746 - PGA1_c06790 0.60 +0.6 699,752 - PGA1_c06790 0.61 -1.0 699,752 - PGA1_c06790 0.61 -0.0 699,752 - PGA1_c06790 0.61 -1.0 699,822 - PGA1_c06790 0.68 +1.1 699,874 + PGA1_c06790 0.73 -0.4 699,874 + PGA1_c06790 0.73 -0.2 699,877 - PGA1_c06790 0.73 -0.0 699,879 + PGA1_c06790 0.73 -0.2 699,882 + PGA1_c06790 0.74 +0.7 699,882 - PGA1_c06790 0.74 +1.0 699,882 - PGA1_c06790 0.74 +1.1 699,887 - PGA1_c06790 0.74 -1.0 699,908 - PGA1_c06790 0.76 -1.9 699,972 + PGA1_c06790 0.83 -0.2 699,972 + PGA1_c06790 0.83 -0.4 699,972 + PGA1_c06790 0.83 -1.4 699,972 + PGA1_c06790 0.83 -0.6 699,980 - PGA1_c06790 0.84 -1.2 699,982 + PGA1_c06790 0.84 -0.6 700,007 + PGA1_c06790 0.87 +0.8
Or see this region's nucleotide sequence