Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c06750 and PGA1_c06760 are separated by 155 nucleotides PGA1_c06760 and PGA1_c06770 are separated by 232 nucleotides
PGA1_c06750: PGA1_c06750 - Putative peptidoglycan binding domain., at 693,634 to 695,295
_c06750
PGA1_c06760: PGA1_c06760 - tRNA-Leu, at 695,451 to 695,537
_c06760
PGA1_c06770: PGA1_c06770 - hypothetical protein, at 695,770 to 696,009
_c06770
Position (kb) 695
696
697 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 694.837 kb on - strand, within PGA1_c06750 at 694.848 kb on + strand, within PGA1_c06750 at 694.848 kb on + strand, within PGA1_c06750 at 694.848 kb on + strand, within PGA1_c06750 at 694.851 kb on - strand, within PGA1_c06750 at 694.855 kb on - strand, within PGA1_c06750 at 694.856 kb on - strand, within PGA1_c06750 at 694.856 kb on - strand, within PGA1_c06750 at 694.869 kb on - strand, within PGA1_c06750 at 694.926 kb on + strand, within PGA1_c06750 at 695.014 kb on + strand, within PGA1_c06750 at 695.014 kb on + strand, within PGA1_c06750 at 695.022 kb on - strand, within PGA1_c06750 at 695.022 kb on - strand, within PGA1_c06750 at 695.030 kb on + strand, within PGA1_c06750 at 695.038 kb on - strand, within PGA1_c06750 at 695.075 kb on - strand, within PGA1_c06750 at 695.079 kb on + strand, within PGA1_c06750 at 695.080 kb on + strand, within PGA1_c06750 at 695.081 kb on - strand, within PGA1_c06750 at 695.110 kb on + strand, within PGA1_c06750 at 695.124 kb on + strand, within PGA1_c06750 at 695.199 kb on + strand at 695.199 kb on + strand at 695.199 kb on + strand at 695.207 kb on - strand at 695.207 kb on - strand at 695.264 kb on + strand at 695.272 kb on + strand at 695.334 kb on + strand at 695.339 kb on + strand at 695.585 kb on - strand at 695.586 kb on + strand at 695.620 kb on + strand at 695.620 kb on + strand at 695.620 kb on + strand at 695.628 kb on - strand at 695.628 kb on - strand at 695.628 kb on - strand at 695.628 kb on - strand at 695.628 kb on - strand at 695.628 kb on - strand at 695.628 kb on - strand at 695.628 kb on - strand at 695.629 kb on - strand at 695.738 kb on - strand at 695.777 kb on + strand at 695.777 kb on + strand at 695.777 kb on + strand at 695.779 kb on - strand at 695.785 kb on + strand at 695.785 kb on + strand at 695.785 kb on - strand at 695.785 kb on - strand at 695.785 kb on - strand at 695.793 kb on - strand at 695.793 kb on - strand at 695.795 kb on + strand, within PGA1_c06770 at 695.795 kb on - strand, within PGA1_c06770 at 695.867 kb on + strand, within PGA1_c06770 at 695.918 kb on + strand, within PGA1_c06770 at 695.918 kb on + strand, within PGA1_c06770 at 695.918 kb on + strand, within PGA1_c06770 at 695.918 kb on + strand, within PGA1_c06770 at 695.918 kb on + strand, within PGA1_c06770 at 695.918 kb on + strand, within PGA1_c06770 at 695.926 kb on - strand, within PGA1_c06770 at 695.926 kb on - strand, within PGA1_c06770 at 695.926 kb on - strand, within PGA1_c06770 at 695.926 kb on - strand, within PGA1_c06770 at 695.926 kb on - strand, within PGA1_c06770 at 695.944 kb on + strand, within PGA1_c06770 at 695.949 kb on + strand, within PGA1_c06770 at 695.949 kb on + strand, within PGA1_c06770 at 695.949 kb on + strand, within PGA1_c06770 at 695.949 kb on + strand, within PGA1_c06770 at 695.949 kb on + strand, within PGA1_c06770 at 695.949 kb on + strand, within PGA1_c06770 at 695.949 kb on + strand, within PGA1_c06770 at 695.949 kb on + strand, within PGA1_c06770 at 695.949 kb on + strand, within PGA1_c06770 at 695.949 kb on + strand, within PGA1_c06770 at 695.949 kb on + strand, within PGA1_c06770 at 695.949 kb on + strand, within PGA1_c06770 at 695.949 kb on + strand, within PGA1_c06770 at 695.949 kb on + strand, within PGA1_c06770 at 695.949 kb on + strand, within PGA1_c06770 at 695.949 kb on + strand, within PGA1_c06770 at 695.949 kb on + strand, within PGA1_c06770 at 695.952 kb on - strand, within PGA1_c06770 at 695.952 kb on - strand, within PGA1_c06770 at 695.957 kb on - strand, within PGA1_c06770 at 695.957 kb on - strand, within PGA1_c06770 at 695.957 kb on - strand, within PGA1_c06770 at 695.957 kb on - strand, within PGA1_c06770 at 695.957 kb on - strand, within PGA1_c06770 at 696.067 kb on - strand at 696.069 kb on + strand at 696.069 kb on + strand at 696.069 kb on + strand at 696.069 kb on + strand at 696.069 kb on + strand at 696.069 kb on + strand at 696.069 kb on + strand at 696.069 kb on + strand at 696.069 kb on + strand at 696.077 kb on - strand at 696.077 kb on - strand at 696.077 kb on - strand at 696.077 kb on - strand at 696.077 kb on - strand at 696.082 kb on - strand at 696.104 kb on + strand at 696.172 kb on - strand at 696.186 kb on - strand at 696.227 kb on + strand at 696.262 kb on + strand at 696.295 kb on + strand at 696.295 kb on + strand at 696.302 kb on + strand at 696.302 kb on + strand at 696.302 kb on + strand at 696.303 kb on - strand at 696.303 kb on - strand at 696.338 kb on - strand at 696.352 kb on - strand at 696.374 kb on - strand at 696.438 kb on + strand at 696.479 kb on + strand at 696.492 kb on + strand at 696.492 kb on + strand at 696.495 kb on - strand at 696.500 kb on - strand at 696.500 kb on - strand at 696.537 kb on + strand at 696.537 kb on + strand at 696.537 kb on + strand at 696.537 kb on + strand at 696.537 kb on + strand at 696.537 kb on + strand at 696.537 kb on + strand at 696.537 kb on + strand at 696.545 kb on - strand at 696.545 kb on - strand at 696.545 kb on - strand at 696.545 kb on - strand at 696.545 kb on - strand at 696.545 kb on - strand at 696.545 kb on - strand at 696.545 kb on - strand at 696.545 kb on - strand at 696.550 kb on - strand at 696.575 kb on - strand at 696.594 kb on + strand at 696.596 kb on + strand at 696.598 kb on + strand at 696.598 kb on + strand at 696.602 kb on - strand at 696.604 kb on + strand at 696.606 kb on - strand at 696.606 kb on - strand at 696.675 kb on + strand at 696.721 kb on + strand at 696.727 kb on + strand at 696.727 kb on + strand at 696.729 kb on - strand at 696.735 kb on - strand at 696.737 kb on + strand at 696.796 kb on + strand at 696.804 kb on - strand at 696.817 kb on - strand at 696.853 kb on - strand at 696.855 kb on + strand at 696.855 kb on + strand at 696.855 kb on + strand at 696.863 kb on - strand at 696.901 kb on - strand at 696.912 kb on + strand at 696.912 kb on + strand at 696.920 kb on + strand at 696.922 kb on + strand at 696.969 kb on - strand at 696.999 kb on - strand at 696.999 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 694,837 - PGA1_c06750 0.72 +0.9 694,848 + PGA1_c06750 0.73 -1.6 694,848 + PGA1_c06750 0.73 +0.9 694,848 + PGA1_c06750 0.73 -0.9 694,851 - PGA1_c06750 0.73 +0.9 694,855 - PGA1_c06750 0.73 +0.4 694,856 - PGA1_c06750 0.74 -0.1 694,856 - PGA1_c06750 0.74 +0.9 694,869 - PGA1_c06750 0.74 +1.4 694,926 + PGA1_c06750 0.78 +1.4 695,014 + PGA1_c06750 0.83 +1.9 695,014 + PGA1_c06750 0.83 +1.9 695,022 - PGA1_c06750 0.84 -0.1 695,022 - PGA1_c06750 0.84 -1.2 695,030 + PGA1_c06750 0.84 -1.1 695,038 - PGA1_c06750 0.84 +2.9 695,075 - PGA1_c06750 0.87 +0.9 695,079 + PGA1_c06750 0.87 -0.4 695,080 + PGA1_c06750 0.87 +1.3 695,081 - PGA1_c06750 0.87 +1.9 695,110 + PGA1_c06750 0.89 -0.1 695,124 + PGA1_c06750 0.90 +0.6 695,199 + +0.9 695,199 + -0.2 695,199 + +0.4 695,207 - +0.4 695,207 - -0.1 695,264 + -1.4 695,272 + +0.4 695,334 + +1.9 695,339 + +1.6 695,585 - +0.9 695,586 + +0.1 695,620 + -0.6 695,620 + -1.6 695,620 + -1.5 695,628 - +0.9 695,628 - -0.1 695,628 - +2.3 695,628 - +1.9 695,628 - -1.1 695,628 - -0.4 695,628 - +0.6 695,628 - -1.1 695,629 - +1.1 695,738 - +0.4 695,777 + -1.1 695,777 + -1.9 695,777 + -0.4 695,779 - -0.5 695,785 + -1.1 695,785 + -0.1 695,785 - -0.1 695,785 - -0.1 695,785 - +1.9 695,793 - +1.9 695,793 - +0.4 695,795 + PGA1_c06770 0.10 -0.6 695,795 - PGA1_c06770 0.10 +0.4 695,867 + PGA1_c06770 0.40 -0.1 695,918 + PGA1_c06770 0.62 -0.4 695,918 + PGA1_c06770 0.62 +0.4 695,918 + PGA1_c06770 0.62 +0.2 695,918 + PGA1_c06770 0.62 +0.4 695,918 + PGA1_c06770 0.62 +0.4 695,918 + PGA1_c06770 0.62 -0.6 695,926 - PGA1_c06770 0.65 +0.4 695,926 - PGA1_c06770 0.65 -1.1 695,926 - PGA1_c06770 0.65 -0.9 695,926 - PGA1_c06770 0.65 -0.4 695,926 - PGA1_c06770 0.65 +1.1 695,944 + PGA1_c06770 0.72 -1.5 695,949 + PGA1_c06770 0.75 +0.4 695,949 + PGA1_c06770 0.75 +0.6 695,949 + PGA1_c06770 0.75 -0.2 695,949 + PGA1_c06770 0.75 -1.2 695,949 + PGA1_c06770 0.75 +0.2 695,949 + PGA1_c06770 0.75 +1.9 695,949 + PGA1_c06770 0.75 +0.2 695,949 + PGA1_c06770 0.75 +1.1 695,949 + PGA1_c06770 0.75 -2.3 695,949 + PGA1_c06770 0.75 +1.9 695,949 + PGA1_c06770 0.75 -0.4 695,949 + PGA1_c06770 0.75 -1.2 695,949 + PGA1_c06770 0.75 -0.6 695,949 + PGA1_c06770 0.75 +1.9 695,949 + PGA1_c06770 0.75 +0.4 695,949 + PGA1_c06770 0.75 +1.2 695,949 + PGA1_c06770 0.75 -1.0 695,952 - PGA1_c06770 0.76 +0.9 695,952 - PGA1_c06770 0.76 +1.4 695,957 - PGA1_c06770 0.78 -0.6 695,957 - PGA1_c06770 0.78 +1.9 695,957 - PGA1_c06770 0.78 -0.9 695,957 - PGA1_c06770 0.78 +0.4 695,957 - PGA1_c06770 0.78 +0.4 696,067 - +1.9 696,069 + +1.5 696,069 + -0.4 696,069 + -2.0 696,069 + +2.3 696,069 + +3.5 696,069 + -0.9 696,069 + +2.3 696,069 + +0.4 696,069 + +1.2 696,077 - +1.3 696,077 - +0.4 696,077 - +0.4 696,077 - +0.4 696,077 - +0.9 696,082 - -1.1 696,104 + -0.8 696,172 - +1.5 696,186 - -0.4 696,227 + -0.1 696,262 + -0.6 696,295 + -0.1 696,295 + -0.8 696,302 + +1.9 696,302 + +0.9 696,302 + -1.5 696,303 - +0.4 696,303 - +1.9 696,338 - -0.9 696,352 - +0.8 696,374 - -0.1 696,438 + -0.9 696,479 + -0.6 696,492 + -1.6 696,492 + +0.5 696,495 - +0.9 696,500 - +1.9 696,500 - -0.1 696,537 + +0.8 696,537 + -0.1 696,537 + -2.4 696,537 + -1.4 696,537 + -1.1 696,537 + +0.5 696,537 + -0.6 696,537 + +0.9 696,545 - +0.6 696,545 - +0.9 696,545 - +2.5 696,545 - +0.4 696,545 - +0.4 696,545 - +1.9 696,545 - -0.1 696,545 - +0.9 696,545 - +0.9 696,550 - +1.9 696,575 - +0.4 696,594 + -0.1 696,596 + +0.7 696,598 + +0.7 696,598 + -0.6 696,602 - +0.6 696,604 + +0.4 696,606 - +2.9 696,606 - +0.4 696,675 + +1.9 696,721 + +0.4 696,727 + -1.8 696,727 + -2.2 696,729 - -0.9 696,735 - -0.6 696,737 + -1.9 696,796 + -0.1 696,804 - +0.5 696,817 - -1.6 696,853 - -0.1 696,855 + -0.1 696,855 + +1.3 696,855 + -1.6 696,863 - -0.8 696,901 - -1.6 696,912 + -2.4 696,912 + +0.9 696,920 + +0.5 696,922 + +0.1 696,969 - +0.4 696,999 - -0.4 696,999 - +0.5
Or see this region's nucleotide sequence