Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c06390 and PGA1_c06400 are separated by 100 nucleotides PGA1_c06400 and PGA1_c06410 are separated by 9 nucleotides PGA1_c06410 and PGA1_c06420 are separated by 207 nucleotides
PGA1_c06390: PGA1_c06390 - putative sulfate transporter, at 654,214 to 655,854
_c06390
PGA1_c06400: PGA1_c06400 - putative antibiotic acetyltransferase, at 655,955 to 656,596
_c06400
PGA1_c06410: PGA1_c06410 - Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family, at 656,606 to 657,211
_c06410
PGA1_c06420: PGA1_c06420 - acetyltransferase domain-containing protein, at 657,419 to 657,928
_c06420
Position (kb) 655
656
657 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 655.026 kb on + strand, within PGA1_c06390 at 655.078 kb on + strand, within PGA1_c06390 at 655.214 kb on - strand, within PGA1_c06390 at 655.238 kb on - strand, within PGA1_c06390 at 655.297 kb on + strand, within PGA1_c06390 at 655.340 kb on + strand, within PGA1_c06390 at 655.340 kb on + strand, within PGA1_c06390 at 655.340 kb on + strand, within PGA1_c06390 at 655.348 kb on - strand, within PGA1_c06390 at 655.348 kb on - strand, within PGA1_c06390 at 655.348 kb on - strand, within PGA1_c06390 at 655.434 kb on + strand, within PGA1_c06390 at 655.469 kb on - strand, within PGA1_c06390 at 655.495 kb on + strand, within PGA1_c06390 at 655.518 kb on + strand, within PGA1_c06390 at 655.532 kb on + strand, within PGA1_c06390 at 655.534 kb on + strand, within PGA1_c06390 at 655.534 kb on + strand, within PGA1_c06390 at 655.637 kb on + strand, within PGA1_c06390 at 655.648 kb on - strand, within PGA1_c06390 at 655.700 kb on - strand at 655.750 kb on + strand at 655.776 kb on + strand at 655.815 kb on + strand at 655.815 kb on + strand at 655.856 kb on - strand at 655.858 kb on + strand at 655.866 kb on - strand at 655.891 kb on + strand at 655.956 kb on - strand at 656.038 kb on + strand, within PGA1_c06400 at 656.103 kb on + strand, within PGA1_c06400 at 656.103 kb on + strand, within PGA1_c06400 at 656.343 kb on + strand, within PGA1_c06400 at 656.354 kb on + strand, within PGA1_c06400 at 656.497 kb on - strand, within PGA1_c06400 at 656.529 kb on - strand, within PGA1_c06400 at 656.565 kb on - strand at 656.581 kb on + strand at 656.594 kb on - strand at 656.644 kb on + strand at 656.695 kb on + strand, within PGA1_c06410 at 656.761 kb on + strand, within PGA1_c06410 at 656.772 kb on + strand, within PGA1_c06410 at 656.772 kb on + strand, within PGA1_c06410 at 656.790 kb on - strand, within PGA1_c06410 at 656.941 kb on + strand, within PGA1_c06410 at 657.058 kb on + strand, within PGA1_c06410 at 657.058 kb on + strand, within PGA1_c06410 at 657.058 kb on + strand, within PGA1_c06410 at 657.058 kb on + strand, within PGA1_c06410 at 657.058 kb on + strand, within PGA1_c06410 at 657.066 kb on - strand, within PGA1_c06410 at 657.066 kb on - strand, within PGA1_c06410 at 657.193 kb on + strand at 657.201 kb on - strand at 657.273 kb on - strand at 657.299 kb on - strand at 657.299 kb on - strand at 657.301 kb on + strand at 657.309 kb on - strand at 657.309 kb on - strand at 657.372 kb on + strand at 657.411 kb on + strand at 657.441 kb on + strand at 657.468 kb on - strand at 657.521 kb on - strand, within PGA1_c06420 at 657.557 kb on - strand, within PGA1_c06420
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 655,026 + PGA1_c06390 0.49 +2.8 655,078 + PGA1_c06390 0.53 -1.4 655,214 - PGA1_c06390 0.61 -0.2 655,238 - PGA1_c06390 0.62 -0.8 655,297 + PGA1_c06390 0.66 +0.9 655,340 + PGA1_c06390 0.69 -0.7 655,340 + PGA1_c06390 0.69 -2.2 655,340 + PGA1_c06390 0.69 -2.6 655,348 - PGA1_c06390 0.69 -0.7 655,348 - PGA1_c06390 0.69 -2.5 655,348 - PGA1_c06390 0.69 +0.5 655,434 + PGA1_c06390 0.74 -1.1 655,469 - PGA1_c06390 0.76 +0.9 655,495 + PGA1_c06390 0.78 +0.5 655,518 + PGA1_c06390 0.79 -0.5 655,532 + PGA1_c06390 0.80 +0.1 655,534 + PGA1_c06390 0.80 -1.4 655,534 + PGA1_c06390 0.80 +2.1 655,637 + PGA1_c06390 0.87 +1.7 655,648 - PGA1_c06390 0.87 +0.0 655,700 - -0.7 655,750 + +0.9 655,776 + -0.8 655,815 + -2.5 655,815 + -1.7 655,856 - +0.3 655,858 + +0.8 655,866 - +0.7 655,891 + -0.5 655,956 - -1.1 656,038 + PGA1_c06400 0.13 -0.1 656,103 + PGA1_c06400 0.23 +0.7 656,103 + PGA1_c06400 0.23 -1.2 656,343 + PGA1_c06400 0.60 -1.8 656,354 + PGA1_c06400 0.62 -0.9 656,497 - PGA1_c06400 0.84 -0.7 656,529 - PGA1_c06400 0.89 -1.2 656,565 - -2.0 656,581 + -1.0 656,594 - -1.6 656,644 + +0.4 656,695 + PGA1_c06410 0.15 +1.6 656,761 + PGA1_c06410 0.26 +0.9 656,772 + PGA1_c06410 0.27 +0.9 656,772 + PGA1_c06410 0.27 -1.5 656,790 - PGA1_c06410 0.30 -1.4 656,941 + PGA1_c06410 0.55 +0.5 657,058 + PGA1_c06410 0.75 -2.3 657,058 + PGA1_c06410 0.75 -0.1 657,058 + PGA1_c06410 0.75 -1.3 657,058 + PGA1_c06410 0.75 -0.1 657,058 + PGA1_c06410 0.75 -1.5 657,066 - PGA1_c06410 0.76 -0.2 657,066 - PGA1_c06410 0.76 -1.5 657,193 + -1.5 657,201 - -1.1 657,273 - -0.8 657,299 - -2.2 657,299 - -0.9 657,301 + +0.2 657,309 - -0.7 657,309 - +1.1 657,372 + -0.7 657,411 + -0.1 657,441 + +0.3 657,468 - +2.3 657,521 - PGA1_c06420 0.20 +0.1 657,557 - PGA1_c06420 0.27 +0.1
Or see this region's nucleotide sequence