Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c00460 and PGA1_c00470 are separated by 169 nucleotides PGA1_c00470 and PGA1_c00480 are separated by 36 nucleotides PGA1_c00480 and PGA1_c00490 overlap by 14 nucleotides
PGA1_c00460: PGA1_c00460 - adenylate cyclase domain-containing protein, at 50,811 to 52,025
_c00460
PGA1_c00470: PGA1_c00470 - hypothetical protein, at 52,195 to 52,506
_c00470
PGA1_c00480: PGA1_c00480 - CAAX prenyl protease-related protein, at 52,543 to 54,171
_c00480
PGA1_c00490: PGA1_c00490 - ATPases involved in chromosome partitioning, at 54,158 to 54,967
_c00490
Position (kb) 52
53
54
55 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 51.590 kb on + strand, within PGA1_c00460 at 51.640 kb on + strand, within PGA1_c00460 at 51.663 kb on - strand, within PGA1_c00460 at 51.663 kb on - strand, within PGA1_c00460 at 51.673 kb on - strand, within PGA1_c00460 at 51.702 kb on - strand, within PGA1_c00460 at 51.726 kb on + strand, within PGA1_c00460 at 51.733 kb on + strand, within PGA1_c00460 at 51.734 kb on - strand, within PGA1_c00460 at 51.738 kb on + strand, within PGA1_c00460 at 51.738 kb on + strand, within PGA1_c00460 at 51.738 kb on + strand, within PGA1_c00460 at 51.738 kb on + strand, within PGA1_c00460 at 51.738 kb on + strand, within PGA1_c00460 at 51.741 kb on - strand, within PGA1_c00460 at 51.746 kb on - strand, within PGA1_c00460 at 51.754 kb on + strand, within PGA1_c00460 at 51.768 kb on + strand, within PGA1_c00460 at 51.774 kb on - strand, within PGA1_c00460 at 51.774 kb on - strand, within PGA1_c00460 at 51.891 kb on - strand, within PGA1_c00460 at 51.906 kb on - strand at 51.906 kb on - strand at 51.930 kb on + strand at 51.943 kb on + strand at 51.943 kb on + strand at 51.943 kb on + strand at 51.943 kb on + strand at 51.951 kb on - strand at 51.951 kb on - strand at 51.951 kb on - strand at 51.961 kb on - strand at 51.961 kb on - strand at 51.982 kb on + strand at 51.990 kb on - strand at 52.004 kb on - strand at 52.019 kb on + strand at 52.109 kb on - strand at 52.111 kb on + strand at 52.117 kb on + strand at 52.117 kb on + strand at 52.117 kb on + strand at 52.117 kb on + strand at 52.118 kb on + strand at 52.118 kb on + strand at 52.118 kb on + strand at 52.118 kb on + strand at 52.119 kb on - strand at 52.126 kb on - strand at 52.126 kb on - strand at 52.126 kb on - strand at 52.153 kb on + strand at 52.154 kb on + strand at 52.158 kb on + strand at 52.158 kb on + strand at 52.158 kb on + strand at 52.161 kb on - strand at 52.167 kb on - strand at 52.169 kb on + strand at 52.172 kb on - strand at 52.172 kb on - strand at 52.183 kb on + strand at 52.183 kb on + strand at 52.199 kb on + strand at 52.207 kb on - strand at 52.209 kb on + strand at 52.209 kb on + strand at 52.217 kb on - strand at 52.217 kb on - strand at 52.273 kb on - strand, within PGA1_c00470 at 52.321 kb on + strand, within PGA1_c00470 at 52.323 kb on - strand, within PGA1_c00470 at 52.329 kb on - strand, within PGA1_c00470 at 52.396 kb on - strand, within PGA1_c00470 at 52.421 kb on + strand, within PGA1_c00470 at 52.421 kb on + strand, within PGA1_c00470 at 52.421 kb on + strand, within PGA1_c00470 at 52.421 kb on + strand, within PGA1_c00470 at 52.426 kb on + strand, within PGA1_c00470 at 52.429 kb on - strand, within PGA1_c00470 at 52.429 kb on - strand, within PGA1_c00470 at 52.429 kb on - strand, within PGA1_c00470 at 52.464 kb on - strand, within PGA1_c00470 at 52.477 kb on - strand at 52.490 kb on + strand at 52.500 kb on + strand at 52.541 kb on + strand at 52.549 kb on - strand at 52.554 kb on - strand at 52.554 kb on - strand at 52.632 kb on - strand at 52.634 kb on + strand at 52.634 kb on + strand at 52.642 kb on + strand at 52.642 kb on - strand at 52.829 kb on - strand, within PGA1_c00480 at 52.832 kb on - strand, within PGA1_c00480 at 52.847 kb on - strand, within PGA1_c00480 at 52.850 kb on + strand, within PGA1_c00480 at 52.858 kb on - strand, within PGA1_c00480 at 52.869 kb on + strand, within PGA1_c00480 at 52.877 kb on - strand, within PGA1_c00480 at 52.882 kb on - strand, within PGA1_c00480 at 52.896 kb on + strand, within PGA1_c00480 at 52.953 kb on + strand, within PGA1_c00480 at 52.975 kb on + strand, within PGA1_c00480 at 52.980 kb on + strand, within PGA1_c00480 at 52.980 kb on + strand, within PGA1_c00480 at 52.980 kb on + strand, within PGA1_c00480 at 52.983 kb on - strand, within PGA1_c00480 at 52.983 kb on - strand, within PGA1_c00480 at 52.983 kb on - strand, within PGA1_c00480 at 52.985 kb on + strand, within PGA1_c00480 at 53.043 kb on - strand, within PGA1_c00480 at 53.053 kb on - strand, within PGA1_c00480 at 53.053 kb on - strand, within PGA1_c00480 at 53.065 kb on + strand, within PGA1_c00480 at 53.065 kb on + strand, within PGA1_c00480 at 53.065 kb on + strand, within PGA1_c00480 at 53.067 kb on + strand, within PGA1_c00480 at 53.067 kb on + strand, within PGA1_c00480 at 53.067 kb on + strand, within PGA1_c00480 at 53.070 kb on + strand, within PGA1_c00480 at 53.073 kb on - strand, within PGA1_c00480 at 53.073 kb on - strand, within PGA1_c00480 at 53.073 kb on - strand, within PGA1_c00480 at 53.075 kb on + strand, within PGA1_c00480 at 53.075 kb on - strand, within PGA1_c00480 at 53.075 kb on - strand, within PGA1_c00480 at 53.075 kb on - strand, within PGA1_c00480 at 53.075 kb on - strand, within PGA1_c00480 at 53.075 kb on - strand, within PGA1_c00480 at 53.075 kb on - strand, within PGA1_c00480 at 53.118 kb on + strand, within PGA1_c00480 at 53.118 kb on - strand, within PGA1_c00480 at 53.126 kb on - strand, within PGA1_c00480 at 53.126 kb on - strand, within PGA1_c00480 at 53.153 kb on + strand, within PGA1_c00480 at 53.206 kb on + strand, within PGA1_c00480 at 53.239 kb on + strand, within PGA1_c00480 at 53.263 kb on + strand, within PGA1_c00480 at 53.273 kb on + strand, within PGA1_c00480 at 53.282 kb on + strand, within PGA1_c00480 at 53.329 kb on + strand, within PGA1_c00480 at 53.334 kb on + strand, within PGA1_c00480 at 53.342 kb on - strand, within PGA1_c00480 at 53.349 kb on - strand, within PGA1_c00480 at 53.362 kb on + strand, within PGA1_c00480 at 53.375 kb on - strand, within PGA1_c00480 at 53.424 kb on + strand, within PGA1_c00480 at 53.457 kb on - strand, within PGA1_c00480 at 53.520 kb on + strand, within PGA1_c00480 at 53.520 kb on + strand, within PGA1_c00480 at 53.545 kb on + strand, within PGA1_c00480 at 53.568 kb on + strand, within PGA1_c00480 at 53.633 kb on + strand, within PGA1_c00480 at 53.633 kb on + strand, within PGA1_c00480 at 53.633 kb on + strand, within PGA1_c00480 at 53.633 kb on + strand, within PGA1_c00480 at 53.633 kb on + strand, within PGA1_c00480 at 53.636 kb on - strand, within PGA1_c00480 at 53.641 kb on - strand, within PGA1_c00480 at 53.641 kb on - strand, within PGA1_c00480 at 53.641 kb on - strand, within PGA1_c00480 at 53.641 kb on - strand, within PGA1_c00480 at 53.641 kb on - strand, within PGA1_c00480 at 53.641 kb on - strand, within PGA1_c00480 at 53.663 kb on - strand, within PGA1_c00480 at 53.669 kb on - strand, within PGA1_c00480 at 53.673 kb on + strand, within PGA1_c00480 at 53.673 kb on + strand, within PGA1_c00480 at 53.681 kb on - strand, within PGA1_c00480 at 53.694 kb on - strand, within PGA1_c00480 at 53.812 kb on - strand, within PGA1_c00480 at 53.864 kb on + strand, within PGA1_c00480 at 53.882 kb on - strand, within PGA1_c00480 at 53.886 kb on + strand, within PGA1_c00480 at 53.957 kb on - strand, within PGA1_c00480 at 53.975 kb on + strand, within PGA1_c00480 at 53.993 kb on + strand, within PGA1_c00480 at 53.998 kb on + strand, within PGA1_c00480 at 53.998 kb on + strand, within PGA1_c00480 at 53.998 kb on + strand, within PGA1_c00480 at 53.998 kb on + strand, within PGA1_c00480 at 53.998 kb on + strand, within PGA1_c00480 at 54.006 kb on - strand, within PGA1_c00480 at 54.006 kb on - strand, within PGA1_c00480 at 54.006 kb on - strand, within PGA1_c00480 at 54.006 kb on - strand, within PGA1_c00480 at 54.042 kb on + strand at 54.145 kb on + strand at 54.151 kb on + strand at 54.211 kb on + strand at 54.211 kb on + strand at 54.220 kb on - strand at 54.237 kb on + strand at 54.285 kb on - strand, within PGA1_c00490 at 54.296 kb on - strand, within PGA1_c00490 at 54.361 kb on + strand, within PGA1_c00490 at 54.480 kb on + strand, within PGA1_c00490 at 54.652 kb on - strand, within PGA1_c00490 at 54.724 kb on + strand, within PGA1_c00490 at 54.724 kb on + strand, within PGA1_c00490 at 54.732 kb on - strand, within PGA1_c00490 at 54.776 kb on - strand, within PGA1_c00490 at 54.779 kb on + strand, within PGA1_c00490 at 54.855 kb on - strand, within PGA1_c00490 at 54.913 kb on + strand at 54.984 kb on - strand at 54.986 kb on - strand at 54.986 kb on - strand at 54.995 kb on + strand at 55.077 kb on - strand at 55.087 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 51,590 + PGA1_c00460 0.64 +0.1 51,640 + PGA1_c00460 0.68 +0.7 51,663 - PGA1_c00460 0.70 +0.4 51,663 - PGA1_c00460 0.70 -0.2 51,673 - PGA1_c00460 0.71 -0.3 51,702 - PGA1_c00460 0.73 +0.1 51,726 + PGA1_c00460 0.75 +1.9 51,733 + PGA1_c00460 0.76 -0.5 51,734 - PGA1_c00460 0.76 -2.2 51,738 + PGA1_c00460 0.76 +1.2 51,738 + PGA1_c00460 0.76 +0.5 51,738 + PGA1_c00460 0.76 -0.5 51,738 + PGA1_c00460 0.76 -1.7 51,738 + PGA1_c00460 0.76 -2.3 51,741 - PGA1_c00460 0.77 -0.6 51,746 - PGA1_c00460 0.77 +0.0 51,754 + PGA1_c00460 0.78 +0.3 51,768 + PGA1_c00460 0.79 -2.2 51,774 - PGA1_c00460 0.79 -0.3 51,774 - PGA1_c00460 0.79 -1.7 51,891 - PGA1_c00460 0.89 -0.0 51,906 - -0.5 51,906 - +0.6 51,930 + +0.7 51,943 + -0.7 51,943 + +1.5 51,943 + +1.3 51,943 + -0.9 51,951 - -1.0 51,951 - +1.5 51,951 - -0.4 51,961 - -1.3 51,961 - +0.5 51,982 + +0.4 51,990 - +0.2 52,004 - -0.1 52,019 + -0.4 52,109 - -0.1 52,111 + +0.1 52,117 + -1.1 52,117 + +1.1 52,117 + -0.2 52,117 + -0.7 52,118 + -1.2 52,118 + -0.6 52,118 + +0.5 52,118 + +0.5 52,119 - -1.4 52,126 - +1.2 52,126 - +0.5 52,126 - +0.1 52,153 + -0.9 52,154 + -0.8 52,158 + +0.7 52,158 + -2.3 52,158 + -2.8 52,161 - -3.0 52,167 - +1.7 52,169 + +0.4 52,172 - -0.4 52,172 - +1.6 52,183 + -0.6 52,183 + -0.1 52,199 + +1.6 52,207 - +0.5 52,209 + +0.1 52,209 + +1.4 52,217 - +0.7 52,217 - -0.3 52,273 - PGA1_c00470 0.25 -0.6 52,321 + PGA1_c00470 0.40 +0.6 52,323 - PGA1_c00470 0.41 +0.6 52,329 - PGA1_c00470 0.43 -2.8 52,396 - PGA1_c00470 0.64 +1.7 52,421 + PGA1_c00470 0.72 -1.5 52,421 + PGA1_c00470 0.72 -0.5 52,421 + PGA1_c00470 0.72 -1.0 52,421 + PGA1_c00470 0.72 -0.1 52,426 + PGA1_c00470 0.74 -1.2 52,429 - PGA1_c00470 0.75 -0.5 52,429 - PGA1_c00470 0.75 -0.5 52,429 - PGA1_c00470 0.75 +0.1 52,464 - PGA1_c00470 0.86 -1.2 52,477 - -1.5 52,490 + +1.3 52,500 + +0.8 52,541 + +0.7 52,549 - +0.9 52,554 - +0.1 52,554 - -1.9 52,632 - -0.5 52,634 + +2.3 52,634 + -0.8 52,642 + +0.9 52,642 - +1.2 52,829 - PGA1_c00480 0.18 +0.8 52,832 - PGA1_c00480 0.18 +0.3 52,847 - PGA1_c00480 0.19 +3.7 52,850 + PGA1_c00480 0.19 -1.1 52,858 - PGA1_c00480 0.19 +1.2 52,869 + PGA1_c00480 0.20 -0.7 52,877 - PGA1_c00480 0.21 -1.2 52,882 - PGA1_c00480 0.21 -1.8 52,896 + PGA1_c00480 0.22 +0.8 52,953 + PGA1_c00480 0.25 +0.7 52,975 + PGA1_c00480 0.27 +0.3 52,980 + PGA1_c00480 0.27 -0.1 52,980 + PGA1_c00480 0.27 +1.7 52,980 + PGA1_c00480 0.27 -0.6 52,983 - PGA1_c00480 0.27 +0.9 52,983 - PGA1_c00480 0.27 -0.1 52,983 - PGA1_c00480 0.27 +0.2 52,985 + PGA1_c00480 0.27 -1.1 53,043 - PGA1_c00480 0.31 +1.5 53,053 - PGA1_c00480 0.31 +0.5 53,053 - PGA1_c00480 0.31 +1.3 53,065 + PGA1_c00480 0.32 -3.6 53,065 + PGA1_c00480 0.32 -0.0 53,065 + PGA1_c00480 0.32 +0.0 53,067 + PGA1_c00480 0.32 +0.3 53,067 + PGA1_c00480 0.32 +0.0 53,067 + PGA1_c00480 0.32 +1.1 53,070 + PGA1_c00480 0.32 +0.6 53,073 - PGA1_c00480 0.33 +0.0 53,073 - PGA1_c00480 0.33 -1.1 53,073 - PGA1_c00480 0.33 +0.7 53,075 + PGA1_c00480 0.33 +0.1 53,075 - PGA1_c00480 0.33 +1.1 53,075 - PGA1_c00480 0.33 -0.1 53,075 - PGA1_c00480 0.33 -0.3 53,075 - PGA1_c00480 0.33 +0.4 53,075 - PGA1_c00480 0.33 +1.7 53,075 - PGA1_c00480 0.33 +0.5 53,118 + PGA1_c00480 0.35 -1.1 53,118 - PGA1_c00480 0.35 +0.1 53,126 - PGA1_c00480 0.36 +1.2 53,126 - PGA1_c00480 0.36 -1.5 53,153 + PGA1_c00480 0.37 +0.9 53,206 + PGA1_c00480 0.41 +0.5 53,239 + PGA1_c00480 0.43 +0.6 53,263 + PGA1_c00480 0.44 -0.9 53,273 + PGA1_c00480 0.45 +0.7 53,282 + PGA1_c00480 0.45 +1.1 53,329 + PGA1_c00480 0.48 +0.4 53,334 + PGA1_c00480 0.49 -0.5 53,342 - PGA1_c00480 0.49 -1.4 53,349 - PGA1_c00480 0.49 +1.3 53,362 + PGA1_c00480 0.50 -1.7 53,375 - PGA1_c00480 0.51 +1.8 53,424 + PGA1_c00480 0.54 -1.6 53,457 - PGA1_c00480 0.56 -0.5 53,520 + PGA1_c00480 0.60 +1.3 53,520 + PGA1_c00480 0.60 -0.4 53,545 + PGA1_c00480 0.62 -1.2 53,568 + PGA1_c00480 0.63 +0.9 53,633 + PGA1_c00480 0.67 -1.8 53,633 + PGA1_c00480 0.67 +0.3 53,633 + PGA1_c00480 0.67 +0.8 53,633 + PGA1_c00480 0.67 -0.6 53,633 + PGA1_c00480 0.67 -0.9 53,636 - PGA1_c00480 0.67 +0.1 53,641 - PGA1_c00480 0.67 -1.2 53,641 - PGA1_c00480 0.67 -0.5 53,641 - PGA1_c00480 0.67 +2.1 53,641 - PGA1_c00480 0.67 +0.5 53,641 - PGA1_c00480 0.67 -1.6 53,641 - PGA1_c00480 0.67 -0.9 53,663 - PGA1_c00480 0.69 -0.2 53,669 - PGA1_c00480 0.69 -1.1 53,673 + PGA1_c00480 0.69 +0.6 53,673 + PGA1_c00480 0.69 +2.4 53,681 - PGA1_c00480 0.70 +0.4 53,694 - PGA1_c00480 0.71 -1.4 53,812 - PGA1_c00480 0.78 -0.5 53,864 + PGA1_c00480 0.81 +0.2 53,882 - PGA1_c00480 0.82 +0.0 53,886 + PGA1_c00480 0.82 -1.4 53,957 - PGA1_c00480 0.87 -0.3 53,975 + PGA1_c00480 0.88 -0.5 53,993 + PGA1_c00480 0.89 +0.8 53,998 + PGA1_c00480 0.89 -0.9 53,998 + PGA1_c00480 0.89 +0.2 53,998 + PGA1_c00480 0.89 +1.7 53,998 + PGA1_c00480 0.89 -0.6 53,998 + PGA1_c00480 0.89 +0.4 54,006 - PGA1_c00480 0.90 -1.2 54,006 - PGA1_c00480 0.90 -1.9 54,006 - PGA1_c00480 0.90 +1.0 54,006 - PGA1_c00480 0.90 -0.3 54,042 + +2.2 54,145 + +0.1 54,151 + -0.6 54,211 + -0.2 54,211 + +0.5 54,220 - -0.4 54,237 + +0.1 54,285 - PGA1_c00490 0.16 -2.2 54,296 - PGA1_c00490 0.17 -2.5 54,361 + PGA1_c00490 0.25 -0.5 54,480 + PGA1_c00490 0.40 -0.7 54,652 - PGA1_c00490 0.61 -0.5 54,724 + PGA1_c00490 0.70 +0.8 54,724 + PGA1_c00490 0.70 +0.5 54,732 - PGA1_c00490 0.71 +1.1 54,776 - PGA1_c00490 0.76 +0.2 54,779 + PGA1_c00490 0.77 +0.1 54,855 - PGA1_c00490 0.86 +1.5 54,913 + -0.2 54,984 - +1.5 54,986 - +0.8 54,986 - +0.9 54,995 + +0.1 55,077 - -0.9 55,087 - -1.1
Or see this region's nucleotide sequence