Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c04880

Experiment: m.b. Fusidic 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c04870 and PGA1_c04880 are separated by 77 nucleotidesPGA1_c04880 and PGA1_c04890 are separated by 9 nucleotides PGA1_c04870: PGA1_c04870 - tryptophan synthase beta chain, at 478,592 to 479,845 _c04870 PGA1_c04880: PGA1_c04880 - Uncharacterized protein conserved in bacteria, at 479,923 to 480,306 _c04880 PGA1_c04890: PGA1_c04890 - putative beta-lactamase, at 480,316 to 481,479 _c04890 Position (kb) 479 480 481Strain fitness (log2 ratio) -2 -1 0 1at 479.813 kb on - strandat 479.844 kb on + strandat 479.852 kb on - strandat 479.852 kb on - strandat 479.904 kb on + strandat 479.914 kb on + strandat 479.921 kb on + strandat 479.929 kb on - strandat 479.929 kb on - strandat 479.938 kb on - strandat 479.951 kb on - strandat 479.963 kb on - strand, within PGA1_c04880at 480.033 kb on - strand, within PGA1_c04880at 480.033 kb on - strand, within PGA1_c04880at 480.033 kb on - strand, within PGA1_c04880at 480.038 kb on - strand, within PGA1_c04880at 480.063 kb on + strand, within PGA1_c04880at 480.063 kb on + strand, within PGA1_c04880at 480.063 kb on + strand, within PGA1_c04880at 480.063 kb on + strand, within PGA1_c04880at 480.073 kb on + strand, within PGA1_c04880at 480.073 kb on + strand, within PGA1_c04880at 480.097 kb on + strand, within PGA1_c04880at 480.119 kb on + strand, within PGA1_c04880at 480.131 kb on - strand, within PGA1_c04880at 480.173 kb on + strand, within PGA1_c04880at 480.180 kb on + strand, within PGA1_c04880at 480.188 kb on - strand, within PGA1_c04880at 480.188 kb on - strand, within PGA1_c04880at 480.188 kb on - strand, within PGA1_c04880at 480.191 kb on + strand, within PGA1_c04880at 480.198 kb on - strand, within PGA1_c04880at 480.198 kb on - strand, within PGA1_c04880at 480.199 kb on - strand, within PGA1_c04880at 480.199 kb on - strand, within PGA1_c04880at 480.199 kb on - strand, within PGA1_c04880at 480.232 kb on - strand, within PGA1_c04880at 480.267 kb on + strand, within PGA1_c04880at 480.270 kb on - strandat 480.282 kb on + strandat 480.290 kb on - strandat 480.295 kb on + strandat 480.308 kb on + strandat 480.313 kb on + strandat 480.323 kb on + strandat 480.392 kb on + strandat 480.397 kb on + strandat 480.400 kb on - strandat 480.405 kb on - strandat 480.426 kb on + strandat 480.438 kb on - strand, within PGA1_c04890at 480.455 kb on + strand, within PGA1_c04890at 480.463 kb on - strand, within PGA1_c04890at 480.516 kb on - strand, within PGA1_c04890at 480.540 kb on - strand, within PGA1_c04890at 480.550 kb on + strand, within PGA1_c04890at 480.558 kb on - strand, within PGA1_c04890at 480.583 kb on - strand, within PGA1_c04890at 480.593 kb on + strand, within PGA1_c04890at 480.661 kb on + strand, within PGA1_c04890at 480.666 kb on + strand, within PGA1_c04890at 480.678 kb on + strand, within PGA1_c04890at 480.681 kb on - strand, within PGA1_c04890at 480.692 kb on + strand, within PGA1_c04890at 480.696 kb on + strand, within PGA1_c04890at 480.803 kb on - strand, within PGA1_c04890at 480.803 kb on - strand, within PGA1_c04890at 480.803 kb on - strand, within PGA1_c04890at 480.803 kb on - strand, within PGA1_c04890at 480.803 kb on - strand, within PGA1_c04890at 480.803 kb on - strand, within PGA1_c04890at 480.803 kb on - strand, within PGA1_c04890at 480.803 kb on - strand, within PGA1_c04890at 480.891 kb on + strand, within PGA1_c04890at 480.898 kb on + strand, within PGA1_c04890at 480.899 kb on - strand, within PGA1_c04890at 480.906 kb on - strand, within PGA1_c04890at 480.934 kb on + strand, within PGA1_c04890at 480.970 kb on + strand, within PGA1_c04890at 480.978 kb on - strand, within PGA1_c04890at 480.978 kb on - strand, within PGA1_c04890at 481.007 kb on + strand, within PGA1_c04890at 481.079 kb on + strand, within PGA1_c04890at 481.142 kb on + strand, within PGA1_c04890at 481.199 kb on - strand, within PGA1_c04890at 481.249 kb on + strand, within PGA1_c04890at 481.249 kb on + strand, within PGA1_c04890at 481.259 kb on + strand, within PGA1_c04890at 481.274 kb on - strand, within PGA1_c04890at 481.274 kb on - strand, within PGA1_c04890at 481.284 kb on - strand, within PGA1_c04890at 481.284 kb on - strand, within PGA1_c04890

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml
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479,813 - +1.2
479,844 + +0.6
479,852 - +0.1
479,852 - -2.4
479,904 + +0.2
479,914 + -1.3
479,921 + +0.8
479,929 - +0.5
479,929 - +0.9
479,938 - -1.1
479,951 - -0.8
479,963 - PGA1_c04880 0.10 -0.1
480,033 - PGA1_c04880 0.29 -0.8
480,033 - PGA1_c04880 0.29 +0.6
480,033 - PGA1_c04880 0.29 -0.0
480,038 - PGA1_c04880 0.30 -0.3
480,063 + PGA1_c04880 0.36 -1.4
480,063 + PGA1_c04880 0.36 -0.5
480,063 + PGA1_c04880 0.36 -0.9
480,063 + PGA1_c04880 0.36 -1.0
480,073 + PGA1_c04880 0.39 +0.0
480,073 + PGA1_c04880 0.39 +0.4
480,097 + PGA1_c04880 0.45 -0.1
480,119 + PGA1_c04880 0.51 -0.8
480,131 - PGA1_c04880 0.54 +0.1
480,173 + PGA1_c04880 0.65 -0.9
480,180 + PGA1_c04880 0.67 +1.2
480,188 - PGA1_c04880 0.69 +0.2
480,188 - PGA1_c04880 0.69 -1.0
480,188 - PGA1_c04880 0.69 -1.7
480,191 + PGA1_c04880 0.70 +0.2
480,198 - PGA1_c04880 0.72 +0.0
480,198 - PGA1_c04880 0.72 +1.3
480,199 - PGA1_c04880 0.72 -1.8
480,199 - PGA1_c04880 0.72 -0.8
480,199 - PGA1_c04880 0.72 -1.1
480,232 - PGA1_c04880 0.80 -0.2
480,267 + PGA1_c04880 0.90 -2.3
480,270 - -0.1
480,282 + +0.4
480,290 - +1.2
480,295 + -1.8
480,308 + -1.6
480,313 + -2.0
480,323 + +1.0
480,392 + -1.2
480,397 + +1.3
480,400 - +0.4
480,405 - -2.4
480,426 + -0.3
480,438 - PGA1_c04890 0.10 +1.3
480,455 + PGA1_c04890 0.12 -0.6
480,463 - PGA1_c04890 0.13 -0.4
480,516 - PGA1_c04890 0.17 +1.4
480,540 - PGA1_c04890 0.19 +1.1
480,550 + PGA1_c04890 0.20 -0.8
480,558 - PGA1_c04890 0.21 +0.8
480,583 - PGA1_c04890 0.23 -0.6
480,593 + PGA1_c04890 0.24 +1.1
480,661 + PGA1_c04890 0.30 -0.8
480,666 + PGA1_c04890 0.30 +1.1
480,678 + PGA1_c04890 0.31 +1.4
480,681 - PGA1_c04890 0.31 +0.8
480,692 + PGA1_c04890 0.32 +0.7
480,696 + PGA1_c04890 0.33 -1.4
480,803 - PGA1_c04890 0.42 -0.0
480,803 - PGA1_c04890 0.42 -1.5
480,803 - PGA1_c04890 0.42 +1.4
480,803 - PGA1_c04890 0.42 +0.8
480,803 - PGA1_c04890 0.42 -1.1
480,803 - PGA1_c04890 0.42 +0.8
480,803 - PGA1_c04890 0.42 +1.5
480,803 - PGA1_c04890 0.42 -1.1
480,891 + PGA1_c04890 0.49 +0.4
480,898 + PGA1_c04890 0.50 +0.1
480,899 - PGA1_c04890 0.50 +0.3
480,906 - PGA1_c04890 0.51 +0.3
480,934 + PGA1_c04890 0.53 -1.0
480,970 + PGA1_c04890 0.56 -0.1
480,978 - PGA1_c04890 0.57 +1.3
480,978 - PGA1_c04890 0.57 +1.2
481,007 + PGA1_c04890 0.59 -1.4
481,079 + PGA1_c04890 0.66 +0.4
481,142 + PGA1_c04890 0.71 +0.9
481,199 - PGA1_c04890 0.76 +0.2
481,249 + PGA1_c04890 0.80 -1.0
481,249 + PGA1_c04890 0.80 -0.4
481,259 + PGA1_c04890 0.81 +1.1
481,274 - PGA1_c04890 0.82 -0.0
481,274 - PGA1_c04890 0.82 -0.8
481,284 - PGA1_c04890 0.83 -0.0
481,284 - PGA1_c04890 0.83 +0.4

Or see this region's nucleotide sequence