Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c04590 and PGA1_c04600 overlap by 4 nucleotides PGA1_c04600 and PGA1_c04610 are separated by 181 nucleotides PGA1_c04610 and PGA1_c04620 are separated by 187 nucleotides PGA1_c04620 and PGA1_c04630 are separated by 83 nucleotides
PGA1_c04590: PGA1_c04590 - putative threonine dehydratase, at 452,579 to 453,553
_c04590
PGA1_c04600: PGA1_c04600 - Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily), at 453,550 to 454,239
_c04600
PGA1_c04610: PGA1_c04610 - haloacid dehalogenase, type II, at 454,421 to 455,107
_c04610
PGA1_c04620: PGA1_c04620 - peptidyl-prolyl cis-trans isomerase, FKBP-type, at 455,295 to 455,723
_c04620
PGA1_c04630: PGA1_c04630 - 2-nitropropane dioxygenase, at 455,807 to 456,901
_c04630
Position (kb) 454
455
456 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 453.432 kb on + strand, within PGA1_c04590 at 453.432 kb on + strand, within PGA1_c04590 at 453.432 kb on + strand, within PGA1_c04590 at 453.440 kb on - strand, within PGA1_c04590 at 453.440 kb on - strand, within PGA1_c04590 at 453.440 kb on - strand, within PGA1_c04590 at 453.440 kb on - strand, within PGA1_c04590 at 453.440 kb on - strand, within PGA1_c04590 at 453.518 kb on + strand at 453.518 kb on + strand at 453.518 kb on + strand at 453.576 kb on + strand at 453.585 kb on + strand at 453.590 kb on + strand at 453.591 kb on + strand at 453.625 kb on + strand, within PGA1_c04600 at 453.634 kb on + strand, within PGA1_c04600 at 453.699 kb on - strand, within PGA1_c04600 at 453.699 kb on - strand, within PGA1_c04600 at 453.813 kb on - strand, within PGA1_c04600 at 453.823 kb on + strand, within PGA1_c04600 at 453.828 kb on + strand, within PGA1_c04600 at 453.942 kb on + strand, within PGA1_c04600 at 453.980 kb on + strand, within PGA1_c04600 at 454.081 kb on + strand, within PGA1_c04600 at 454.156 kb on - strand, within PGA1_c04600 at 454.165 kb on + strand, within PGA1_c04600 at 454.170 kb on + strand, within PGA1_c04600 at 454.208 kb on - strand at 454.208 kb on - strand at 454.220 kb on + strand at 454.291 kb on + strand at 454.358 kb on - strand at 454.362 kb on + strand at 454.370 kb on - strand at 454.371 kb on + strand at 454.371 kb on + strand at 454.381 kb on + strand at 454.381 kb on + strand at 454.389 kb on - strand at 454.413 kb on + strand at 454.421 kb on - strand at 454.421 kb on - strand at 454.451 kb on - strand at 454.451 kb on - strand at 454.456 kb on - strand at 454.457 kb on + strand at 454.463 kb on + strand at 454.484 kb on - strand at 454.622 kb on + strand, within PGA1_c04610 at 454.628 kb on + strand, within PGA1_c04610 at 454.630 kb on - strand, within PGA1_c04610 at 454.631 kb on - strand, within PGA1_c04610 at 454.631 kb on - strand, within PGA1_c04610 at 454.631 kb on - strand, within PGA1_c04610 at 454.716 kb on + strand, within PGA1_c04610 at 454.747 kb on + strand, within PGA1_c04610 at 454.752 kb on + strand, within PGA1_c04610 at 454.755 kb on - strand, within PGA1_c04610 at 454.755 kb on - strand, within PGA1_c04610 at 454.765 kb on - strand, within PGA1_c04610 at 454.765 kb on - strand, within PGA1_c04610 at 454.765 kb on - strand, within PGA1_c04610 at 454.770 kb on + strand, within PGA1_c04610 at 454.806 kb on - strand, within PGA1_c04610 at 454.808 kb on + strand, within PGA1_c04610 at 454.808 kb on + strand, within PGA1_c04610 at 454.808 kb on + strand, within PGA1_c04610 at 454.808 kb on + strand, within PGA1_c04610 at 454.816 kb on - strand, within PGA1_c04610 at 454.816 kb on - strand, within PGA1_c04610 at 454.816 kb on - strand, within PGA1_c04610 at 454.816 kb on - strand, within PGA1_c04610 at 454.816 kb on - strand, within PGA1_c04610 at 454.816 kb on - strand, within PGA1_c04610 at 454.857 kb on - strand, within PGA1_c04610 at 454.887 kb on - strand, within PGA1_c04610 at 454.897 kb on - strand, within PGA1_c04610 at 454.897 kb on - strand, within PGA1_c04610 at 454.929 kb on + strand, within PGA1_c04610 at 454.934 kb on + strand, within PGA1_c04610 at 454.942 kb on + strand, within PGA1_c04610 at 454.963 kb on - strand, within PGA1_c04610 at 454.982 kb on - strand, within PGA1_c04610 at 454.988 kb on - strand, within PGA1_c04610 at 455.011 kb on + strand, within PGA1_c04610 at 455.087 kb on + strand at 455.112 kb on - strand at 455.135 kb on - strand at 455.144 kb on - strand at 455.207 kb on + strand at 455.215 kb on - strand at 455.215 kb on - strand at 455.215 kb on - strand at 455.246 kb on + strand at 455.247 kb on + strand at 455.247 kb on + strand at 455.247 kb on + strand at 455.247 kb on + strand at 455.247 kb on + strand at 455.247 kb on + strand at 455.247 kb on + strand at 455.247 kb on + strand at 455.247 kb on + strand at 455.247 kb on + strand at 455.247 kb on + strand at 455.247 kb on + strand at 455.247 kb on + strand at 455.247 kb on + strand at 455.247 kb on + strand at 455.255 kb on - strand at 455.255 kb on - strand at 455.255 kb on - strand at 455.255 kb on - strand at 455.255 kb on - strand at 455.255 kb on - strand at 455.255 kb on - strand at 455.255 kb on - strand at 455.257 kb on - strand at 455.257 kb on - strand at 455.283 kb on + strand at 455.300 kb on - strand at 455.338 kb on - strand, within PGA1_c04620 at 455.369 kb on - strand, within PGA1_c04620 at 455.371 kb on + strand, within PGA1_c04620 at 455.379 kb on - strand, within PGA1_c04620 at 455.379 kb on - strand, within PGA1_c04620 at 455.379 kb on - strand, within PGA1_c04620 at 455.498 kb on - strand, within PGA1_c04620 at 455.498 kb on - strand, within PGA1_c04620 at 455.523 kb on + strand, within PGA1_c04620 at 455.641 kb on + strand, within PGA1_c04620 at 455.653 kb on + strand, within PGA1_c04620 at 455.655 kb on - strand, within PGA1_c04620 at 455.661 kb on - strand, within PGA1_c04620 at 455.661 kb on - strand, within PGA1_c04620 at 455.722 kb on - strand at 455.727 kb on - strand at 455.735 kb on - strand at 455.741 kb on - strand at 455.745 kb on - strand at 455.750 kb on - strand at 455.792 kb on + strand at 455.849 kb on + strand at 455.857 kb on - strand at 455.857 kb on - strand at 455.857 kb on - strand at 455.939 kb on - strand, within PGA1_c04630 at 455.961 kb on + strand, within PGA1_c04630 at 455.961 kb on + strand, within PGA1_c04630 at 455.961 kb on + strand, within PGA1_c04630 at 455.999 kb on + strand, within PGA1_c04630 at 456.016 kb on - strand, within PGA1_c04630 at 456.029 kb on - strand, within PGA1_c04630 at 456.060 kb on - strand, within PGA1_c04630 at 456.078 kb on + strand, within PGA1_c04630 at 456.096 kb on - strand, within PGA1_c04630 at 456.099 kb on + strand, within PGA1_c04630 at 456.107 kb on - strand, within PGA1_c04630 at 456.107 kb on - strand, within PGA1_c04630
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 453,432 + PGA1_c04590 0.87 -0.5 453,432 + PGA1_c04590 0.87 +0.6 453,432 + PGA1_c04590 0.87 +0.2 453,440 - PGA1_c04590 0.88 -0.1 453,440 - PGA1_c04590 0.88 +1.4 453,440 - PGA1_c04590 0.88 -0.0 453,440 - PGA1_c04590 0.88 +0.2 453,440 - PGA1_c04590 0.88 -1.7 453,518 + -0.0 453,518 + -1.2 453,518 + +0.2 453,576 + -0.5 453,585 + +0.9 453,590 + +1.1 453,591 + +1.8 453,625 + PGA1_c04600 0.11 +0.1 453,634 + PGA1_c04600 0.12 -0.5 453,699 - PGA1_c04600 0.22 +0.3 453,699 - PGA1_c04600 0.22 +0.7 453,813 - PGA1_c04600 0.38 +0.4 453,823 + PGA1_c04600 0.40 +2.4 453,828 + PGA1_c04600 0.40 +0.9 453,942 + PGA1_c04600 0.57 -2.6 453,980 + PGA1_c04600 0.62 +0.2 454,081 + PGA1_c04600 0.77 +2.0 454,156 - PGA1_c04600 0.88 +1.2 454,165 + PGA1_c04600 0.89 +1.2 454,170 + PGA1_c04600 0.90 -0.4 454,208 - -2.7 454,208 - -0.1 454,220 + +0.3 454,291 + +0.5 454,358 - +1.0 454,362 + +1.8 454,370 - -2.0 454,371 + +2.3 454,371 + +0.4 454,381 + -0.5 454,381 + -0.3 454,389 - -0.8 454,413 + +0.3 454,421 - +1.2 454,421 - -0.2 454,451 - -0.5 454,451 - -1.8 454,456 - -0.3 454,457 + -1.7 454,463 + +1.1 454,484 - +1.0 454,622 + PGA1_c04610 0.29 -0.6 454,628 + PGA1_c04610 0.30 -1.1 454,630 - PGA1_c04610 0.30 -0.1 454,631 - PGA1_c04610 0.31 -1.8 454,631 - PGA1_c04610 0.31 +0.6 454,631 - PGA1_c04610 0.31 +1.8 454,716 + PGA1_c04610 0.43 -0.9 454,747 + PGA1_c04610 0.47 -0.0 454,752 + PGA1_c04610 0.48 +1.8 454,755 - PGA1_c04610 0.49 +0.4 454,755 - PGA1_c04610 0.49 +2.5 454,765 - PGA1_c04610 0.50 +1.6 454,765 - PGA1_c04610 0.50 +2.0 454,765 - PGA1_c04610 0.50 +0.4 454,770 + PGA1_c04610 0.51 +2.3 454,806 - PGA1_c04610 0.56 +0.4 454,808 + PGA1_c04610 0.56 +0.9 454,808 + PGA1_c04610 0.56 +0.5 454,808 + PGA1_c04610 0.56 +0.4 454,808 + PGA1_c04610 0.56 +0.0 454,816 - PGA1_c04610 0.57 +0.5 454,816 - PGA1_c04610 0.57 -0.1 454,816 - PGA1_c04610 0.57 +1.5 454,816 - PGA1_c04610 0.57 +1.2 454,816 - PGA1_c04610 0.57 -0.4 454,816 - PGA1_c04610 0.57 -0.0 454,857 - PGA1_c04610 0.63 -0.6 454,887 - PGA1_c04610 0.68 +1.0 454,897 - PGA1_c04610 0.69 -1.0 454,897 - PGA1_c04610 0.69 -1.5 454,929 + PGA1_c04610 0.74 +0.3 454,934 + PGA1_c04610 0.75 -1.0 454,942 + PGA1_c04610 0.76 +0.3 454,963 - PGA1_c04610 0.79 -0.1 454,982 - PGA1_c04610 0.82 -2.5 454,988 - PGA1_c04610 0.83 -0.4 455,011 + PGA1_c04610 0.86 -0.0 455,087 + -0.3 455,112 - +2.0 455,135 - +0.2 455,144 - +0.4 455,207 + +1.6 455,215 - -0.2 455,215 - -0.0 455,215 - -0.2 455,246 + -0.4 455,247 + +0.8 455,247 + -0.4 455,247 + +0.1 455,247 + +0.7 455,247 + +1.1 455,247 + -0.4 455,247 + -1.5 455,247 + +0.4 455,247 + -1.0 455,247 + -1.2 455,247 + -0.1 455,247 + +0.2 455,247 + -0.4 455,247 + -0.2 455,247 + -0.4 455,255 - +0.0 455,255 - -2.8 455,255 - +0.3 455,255 - +0.7 455,255 - -1.9 455,255 - +0.3 455,255 - +0.6 455,255 - -1.0 455,257 - +0.3 455,257 - +2.3 455,283 + -1.4 455,300 - -1.4 455,338 - PGA1_c04620 0.10 +0.6 455,369 - PGA1_c04620 0.17 -0.8 455,371 + PGA1_c04620 0.18 -0.5 455,379 - PGA1_c04620 0.20 +0.3 455,379 - PGA1_c04620 0.20 -1.1 455,379 - PGA1_c04620 0.20 -0.9 455,498 - PGA1_c04620 0.47 +1.1 455,498 - PGA1_c04620 0.47 -0.7 455,523 + PGA1_c04620 0.53 -0.9 455,641 + PGA1_c04620 0.81 +0.5 455,653 + PGA1_c04620 0.83 +1.0 455,655 - PGA1_c04620 0.84 -0.8 455,661 - PGA1_c04620 0.85 -2.3 455,661 - PGA1_c04620 0.85 -0.4 455,722 - +1.0 455,727 - -1.3 455,735 - -2.6 455,741 - -2.4 455,745 - -0.4 455,750 - -0.4 455,792 + +0.2 455,849 + +0.9 455,857 - -0.0 455,857 - +0.7 455,857 - -0.1 455,939 - PGA1_c04630 0.12 -0.4 455,961 + PGA1_c04630 0.14 -0.9 455,961 + PGA1_c04630 0.14 +0.1 455,961 + PGA1_c04630 0.14 -0.1 455,999 + PGA1_c04630 0.18 -1.3 456,016 - PGA1_c04630 0.19 -0.7 456,029 - PGA1_c04630 0.20 +1.1 456,060 - PGA1_c04630 0.23 -0.2 456,078 + PGA1_c04630 0.25 +1.2 456,096 - PGA1_c04630 0.26 -0.8 456,099 + PGA1_c04630 0.27 -2.1 456,107 - PGA1_c04630 0.27 +0.1 456,107 - PGA1_c04630 0.27 -0.1
Or see this region's nucleotide sequence