Strain Fitness in Marinobacter adhaerens HP15 around HP15_p187g60

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_p187g59 and HP15_p187g60 are separated by 3 nucleotidesHP15_p187g60 and HP15_p187g61 are separated by 49 nucleotides HP15_p187g59: HP15_p187g59 - glycosyl transferase, group 1, at 52,758 to 53,807 _p187g59 HP15_p187g60: HP15_p187g60 - asparagine synthase, glutamine-hydrolyzing, at 53,811 to 55,784 _p187g60 HP15_p187g61: HP15_p187g61 - conserved hypothetical protein, membrane, at 55,834 to 56,874 _p187g61 Position (kb) 53 54 55 56Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 52.835 kb on - strandat 52.853 kb on - strandat 52.957 kb on - strand, within HP15_p187g59at 52.977 kb on + strand, within HP15_p187g59at 53.006 kb on - strand, within HP15_p187g59at 53.010 kb on + strand, within HP15_p187g59at 53.018 kb on - strand, within HP15_p187g59at 53.086 kb on - strand, within HP15_p187g59at 53.157 kb on + strand, within HP15_p187g59at 53.173 kb on - strand, within HP15_p187g59at 53.173 kb on - strand, within HP15_p187g59at 53.189 kb on + strand, within HP15_p187g59at 53.203 kb on + strand, within HP15_p187g59at 53.211 kb on - strand, within HP15_p187g59at 53.213 kb on + strand, within HP15_p187g59at 53.214 kb on + strand, within HP15_p187g59at 53.221 kb on - strand, within HP15_p187g59at 53.221 kb on - strand, within HP15_p187g59at 53.223 kb on + strand, within HP15_p187g59at 53.231 kb on - strand, within HP15_p187g59at 53.288 kb on + strand, within HP15_p187g59at 53.305 kb on - strand, within HP15_p187g59at 53.309 kb on + strand, within HP15_p187g59at 53.334 kb on + strand, within HP15_p187g59at 53.386 kb on - strand, within HP15_p187g59at 53.445 kb on + strand, within HP15_p187g59at 53.448 kb on - strand, within HP15_p187g59at 53.493 kb on - strand, within HP15_p187g59at 53.546 kb on + strand, within HP15_p187g59at 53.546 kb on + strand, within HP15_p187g59at 53.552 kb on + strand, within HP15_p187g59at 53.552 kb on + strand, within HP15_p187g59at 53.554 kb on - strand, within HP15_p187g59at 53.562 kb on - strand, within HP15_p187g59at 53.619 kb on + strand, within HP15_p187g59at 53.646 kb on - strand, within HP15_p187g59at 53.683 kb on + strand, within HP15_p187g59at 53.683 kb on + strand, within HP15_p187g59at 53.773 kb on - strandat 53.782 kb on + strandat 53.782 kb on + strandat 53.790 kb on - strandat 53.790 kb on - strandat 53.831 kb on + strandat 53.856 kb on + strandat 53.858 kb on + strandat 53.858 kb on + strandat 53.858 kb on + strandat 53.864 kb on - strandat 53.864 kb on - strandat 53.871 kb on - strandat 53.941 kb on - strandat 54.143 kb on - strand, within HP15_p187g60at 54.154 kb on + strand, within HP15_p187g60at 54.162 kb on - strand, within HP15_p187g60at 54.202 kb on + strand, within HP15_p187g60at 54.202 kb on + strand, within HP15_p187g60at 54.240 kb on - strand, within HP15_p187g60at 54.262 kb on - strand, within HP15_p187g60at 54.323 kb on + strand, within HP15_p187g60at 54.324 kb on + strand, within HP15_p187g60at 54.362 kb on - strand, within HP15_p187g60at 54.366 kb on + strand, within HP15_p187g60at 54.374 kb on - strand, within HP15_p187g60at 54.374 kb on - strand, within HP15_p187g60at 54.376 kb on - strand, within HP15_p187g60at 54.376 kb on - strand, within HP15_p187g60at 54.493 kb on + strand, within HP15_p187g60at 54.537 kb on + strand, within HP15_p187g60at 54.545 kb on - strand, within HP15_p187g60at 54.575 kb on + strand, within HP15_p187g60at 54.578 kb on - strand, within HP15_p187g60at 54.657 kb on + strand, within HP15_p187g60at 54.657 kb on + strand, within HP15_p187g60at 54.657 kb on + strand, within HP15_p187g60at 54.657 kb on + strand, within HP15_p187g60at 54.657 kb on + strand, within HP15_p187g60at 54.665 kb on - strand, within HP15_p187g60at 54.665 kb on - strand, within HP15_p187g60at 54.665 kb on - strand, within HP15_p187g60at 54.665 kb on - strand, within HP15_p187g60at 54.730 kb on + strand, within HP15_p187g60at 54.737 kb on - strand, within HP15_p187g60at 54.737 kb on - strand, within HP15_p187g60at 54.738 kb on - strand, within HP15_p187g60at 54.738 kb on - strand, within HP15_p187g60at 54.741 kb on + strand, within HP15_p187g60at 54.785 kb on + strand, within HP15_p187g60at 54.793 kb on - strand, within HP15_p187g60at 54.793 kb on - strand, within HP15_p187g60at 54.797 kb on + strand, within HP15_p187g60at 54.797 kb on + strand, within HP15_p187g60at 54.797 kb on + strand, within HP15_p187g60at 54.797 kb on + strand, within HP15_p187g60at 54.797 kb on + strand, within HP15_p187g60at 54.805 kb on - strand, within HP15_p187g60at 54.824 kb on - strand, within HP15_p187g60at 54.828 kb on + strand, within HP15_p187g60at 54.855 kb on + strand, within HP15_p187g60at 54.906 kb on - strand, within HP15_p187g60at 54.934 kb on + strand, within HP15_p187g60at 54.938 kb on + strand, within HP15_p187g60at 54.982 kb on + strand, within HP15_p187g60at 55.048 kb on + strand, within HP15_p187g60at 55.054 kb on + strand, within HP15_p187g60at 55.056 kb on - strand, within HP15_p187g60at 55.086 kb on - strand, within HP15_p187g60at 55.100 kb on - strand, within HP15_p187g60at 55.116 kb on + strand, within HP15_p187g60at 55.116 kb on + strand, within HP15_p187g60at 55.116 kb on + strand, within HP15_p187g60at 55.124 kb on - strand, within HP15_p187g60at 55.234 kb on + strand, within HP15_p187g60at 55.242 kb on - strand, within HP15_p187g60at 55.252 kb on + strand, within HP15_p187g60at 55.260 kb on - strand, within HP15_p187g60at 55.284 kb on + strand, within HP15_p187g60at 55.342 kb on + strand, within HP15_p187g60at 55.370 kb on + strand, within HP15_p187g60at 55.370 kb on + strand, within HP15_p187g60at 55.384 kb on + strand, within HP15_p187g60at 55.402 kb on + strand, within HP15_p187g60at 55.402 kb on + strand, within HP15_p187g60at 55.402 kb on + strand, within HP15_p187g60at 55.404 kb on + strand, within HP15_p187g60at 55.410 kb on - strandat 55.410 kb on - strand, within HP15_p187g60at 55.439 kb on + strand, within HP15_p187g60at 55.439 kb on + strand, within HP15_p187g60at 55.439 kb on + strand, within HP15_p187g60at 55.447 kb on - strand, within HP15_p187g60at 55.447 kb on - strand, within HP15_p187g60at 55.457 kb on - strand, within HP15_p187g60at 55.466 kb on + strand, within HP15_p187g60at 55.474 kb on - strand, within HP15_p187g60at 55.474 kb on - strand, within HP15_p187g60at 55.558 kb on - strand, within HP15_p187g60at 55.671 kb on - strandat 55.724 kb on + strandat 55.729 kb on + strandat 55.732 kb on - strandat 55.732 kb on - strandat 55.732 kb on - strandat 55.732 kb on - strandat 55.732 kb on - strandat 55.732 kb on - strandat 55.750 kb on - strandat 55.879 kb on - strandat 55.952 kb on + strand, within HP15_p187g61at 55.952 kb on + strand, within HP15_p187g61at 55.960 kb on - strand, within HP15_p187g61at 55.993 kb on - strand, within HP15_p187g61at 56.061 kb on - strand, within HP15_p187g61at 56.154 kb on - strand, within HP15_p187g61at 56.176 kb on + strand, within HP15_p187g61at 56.184 kb on - strand, within HP15_p187g61at 56.186 kb on - strand, within HP15_p187g61at 56.193 kb on + strand, within HP15_p187g61at 56.226 kb on + strand, within HP15_p187g61at 56.235 kb on - strand, within HP15_p187g61at 56.240 kb on - strand, within HP15_p187g61at 56.240 kb on - strand, within HP15_p187g61at 56.241 kb on - strand, within HP15_p187g61at 56.241 kb on - strand, within HP15_p187g61at 56.241 kb on - strand, within HP15_p187g61at 56.254 kb on + strand, within HP15_p187g61at 56.254 kb on + strand, within HP15_p187g61at 56.262 kb on - strand, within HP15_p187g61at 56.262 kb on - strand, within HP15_p187g61at 56.262 kb on - strand, within HP15_p187g61at 56.283 kb on - strand, within HP15_p187g61at 56.364 kb on - strand, within HP15_p187g61at 56.382 kb on + strand, within HP15_p187g61at 56.397 kb on - strand, within HP15_p187g61at 56.420 kb on - strand, within HP15_p187g61at 56.475 kb on + strand, within HP15_p187g61at 56.475 kb on + strand, within HP15_p187g61at 56.483 kb on - strand, within HP15_p187g61at 56.483 kb on - strand, within HP15_p187g61at 56.519 kb on + strand, within HP15_p187g61at 56.562 kb on - strand, within HP15_p187g61at 56.579 kb on + strand, within HP15_p187g61at 56.579 kb on + strand, within HP15_p187g61at 56.587 kb on - strand, within HP15_p187g61at 56.661 kb on + strand, within HP15_p187g61at 56.686 kb on + strand, within HP15_p187g61at 56.686 kb on + strand, within HP15_p187g61at 56.766 kb on + strand, within HP15_p187g61at 56.769 kb on - strand, within HP15_p187g61

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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52,835 - +0.9
52,853 - -0.5
52,957 - HP15_p187g59 0.19 -1.2
52,977 + HP15_p187g59 0.21 +0.1
53,006 - HP15_p187g59 0.24 -0.1
53,010 + HP15_p187g59 0.24 +0.7
53,018 - HP15_p187g59 0.25 -0.5
53,086 - HP15_p187g59 0.31 -1.0
53,157 + HP15_p187g59 0.38 -0.1
53,173 - HP15_p187g59 0.40 -0.3
53,173 - HP15_p187g59 0.40 +0.4
53,189 + HP15_p187g59 0.41 -0.3
53,203 + HP15_p187g59 0.42 +1.1
53,211 - HP15_p187g59 0.43 -0.8
53,213 + HP15_p187g59 0.43 +0.2
53,214 + HP15_p187g59 0.43 -0.4
53,221 - HP15_p187g59 0.44 +2.1
53,221 - HP15_p187g59 0.44 -0.6
53,223 + HP15_p187g59 0.44 -0.5
53,231 - HP15_p187g59 0.45 +0.2
53,288 + HP15_p187g59 0.50 -0.4
53,305 - HP15_p187g59 0.52 +1.5
53,309 + HP15_p187g59 0.52 -0.4
53,334 + HP15_p187g59 0.55 -0.8
53,386 - HP15_p187g59 0.60 +0.4
53,445 + HP15_p187g59 0.65 +0.2
53,448 - HP15_p187g59 0.66 +0.9
53,493 - HP15_p187g59 0.70 -0.6
53,546 + HP15_p187g59 0.75 +1.2
53,546 + HP15_p187g59 0.75 -0.1
53,552 + HP15_p187g59 0.76 -0.5
53,552 + HP15_p187g59 0.76 +0.3
53,554 - HP15_p187g59 0.76 -0.1
53,562 - HP15_p187g59 0.77 -1.5
53,619 + HP15_p187g59 0.82 -0.3
53,646 - HP15_p187g59 0.85 -0.2
53,683 + HP15_p187g59 0.88 +0.5
53,683 + HP15_p187g59 0.88 -0.1
53,773 - -0.6
53,782 + -0.5
53,782 + +0.5
53,790 - -0.1
53,790 - +0.5
53,831 + -1.1
53,856 + +0.5
53,858 + -1.6
53,858 + +0.4
53,858 + +0.8
53,864 - +0.8
53,864 - +0.0
53,871 - -0.4
53,941 - -0.3
54,143 - HP15_p187g60 0.17 +1.0
54,154 + HP15_p187g60 0.17 -0.0
54,162 - HP15_p187g60 0.18 -0.2
54,202 + HP15_p187g60 0.20 -0.1
54,202 + HP15_p187g60 0.20 +0.6
54,240 - HP15_p187g60 0.22 +0.8
54,262 - HP15_p187g60 0.23 +0.5
54,323 + HP15_p187g60 0.26 +0.1
54,324 + HP15_p187g60 0.26 +0.6
54,362 - HP15_p187g60 0.28 +0.3
54,366 + HP15_p187g60 0.28 +0.7
54,374 - HP15_p187g60 0.29 -0.7
54,374 - HP15_p187g60 0.29 +0.2
54,376 - HP15_p187g60 0.29 -0.6
54,376 - HP15_p187g60 0.29 +0.5
54,493 + HP15_p187g60 0.35 +1.7
54,537 + HP15_p187g60 0.37 -1.0
54,545 - HP15_p187g60 0.37 -0.5
54,575 + HP15_p187g60 0.39 +0.1
54,578 - HP15_p187g60 0.39 -0.7
54,657 + HP15_p187g60 0.43 -0.5
54,657 + HP15_p187g60 0.43 -1.1
54,657 + HP15_p187g60 0.43 -0.2
54,657 + HP15_p187g60 0.43 +0.0
54,657 + HP15_p187g60 0.43 -0.9
54,665 - HP15_p187g60 0.43 +0.7
54,665 - HP15_p187g60 0.43 -0.7
54,665 - HP15_p187g60 0.43 +0.9
54,665 - HP15_p187g60 0.43 +1.2
54,730 + HP15_p187g60 0.47 +0.0
54,737 - HP15_p187g60 0.47 +0.7
54,737 - HP15_p187g60 0.47 -0.9
54,738 - HP15_p187g60 0.47 -0.7
54,738 - HP15_p187g60 0.47 +0.5
54,741 + HP15_p187g60 0.47 -1.3
54,785 + HP15_p187g60 0.49 +1.4
54,793 - HP15_p187g60 0.50 +0.7
54,793 - HP15_p187g60 0.50 -0.5
54,797 + HP15_p187g60 0.50 +2.4
54,797 + HP15_p187g60 0.50 +1.5
54,797 + HP15_p187g60 0.50 +0.1
54,797 + HP15_p187g60 0.50 +0.0
54,797 + HP15_p187g60 0.50 +0.3
54,805 - HP15_p187g60 0.50 -0.7
54,824 - HP15_p187g60 0.51 +0.7
54,828 + HP15_p187g60 0.52 +0.7
54,855 + HP15_p187g60 0.53 +0.5
54,906 - HP15_p187g60 0.55 -0.5
54,934 + HP15_p187g60 0.57 -0.3
54,938 + HP15_p187g60 0.57 -1.3
54,982 + HP15_p187g60 0.59 +0.0
55,048 + HP15_p187g60 0.63 +0.0
55,054 + HP15_p187g60 0.63 -0.3
55,056 - HP15_p187g60 0.63 -1.3
55,086 - HP15_p187g60 0.65 -1.3
55,100 - HP15_p187g60 0.65 -0.1
55,116 + HP15_p187g60 0.66 +1.9
55,116 + HP15_p187g60 0.66 -1.0
55,116 + HP15_p187g60 0.66 -1.5
55,124 - HP15_p187g60 0.67 -1.1
55,234 + HP15_p187g60 0.72 -0.6
55,242 - HP15_p187g60 0.72 -0.2
55,252 + HP15_p187g60 0.73 +0.5
55,260 - HP15_p187g60 0.73 -0.3
55,284 + HP15_p187g60 0.75 -0.3
55,342 + HP15_p187g60 0.78 +0.4
55,370 + HP15_p187g60 0.79 +1.4
55,370 + HP15_p187g60 0.79 +1.0
55,384 + HP15_p187g60 0.80 +0.8
55,402 + HP15_p187g60 0.81 +0.1
55,402 + HP15_p187g60 0.81 -0.7
55,402 + HP15_p187g60 0.81 +0.2
55,404 + HP15_p187g60 0.81 -1.9
55,410 - +0.7
55,410 - HP15_p187g60 0.81 +0.9
55,439 + HP15_p187g60 0.82 +0.7
55,439 + HP15_p187g60 0.82 +0.1
55,439 + HP15_p187g60 0.82 -0.9
55,447 - HP15_p187g60 0.83 -0.3
55,447 - HP15_p187g60 0.83 -0.8
55,457 - HP15_p187g60 0.83 -0.1
55,466 + HP15_p187g60 0.84 +0.2
55,474 - HP15_p187g60 0.84 -2.9
55,474 - HP15_p187g60 0.84 +0.8
55,558 - HP15_p187g60 0.89 -0.1
55,671 - -0.8
55,724 + -0.3
55,729 + -1.4
55,732 - +0.4
55,732 - +0.5
55,732 - -0.2
55,732 - +2.7
55,732 - +0.3
55,732 - +0.7
55,750 - +0.8
55,879 - -0.2
55,952 + HP15_p187g61 0.11 -0.3
55,952 + HP15_p187g61 0.11 -1.0
55,960 - HP15_p187g61 0.12 -0.4
55,993 - HP15_p187g61 0.15 +0.1
56,061 - HP15_p187g61 0.22 -0.1
56,154 - HP15_p187g61 0.31 +0.4
56,176 + HP15_p187g61 0.33 +0.2
56,184 - HP15_p187g61 0.34 -0.6
56,186 - HP15_p187g61 0.34 +0.0
56,193 + HP15_p187g61 0.34 +0.2
56,226 + HP15_p187g61 0.38 -0.4
56,235 - HP15_p187g61 0.39 -0.0
56,240 - HP15_p187g61 0.39 -0.0
56,240 - HP15_p187g61 0.39 +1.3
56,241 - HP15_p187g61 0.39 -0.8
56,241 - HP15_p187g61 0.39 -1.2
56,241 - HP15_p187g61 0.39 -0.3
56,254 + HP15_p187g61 0.40 -0.6
56,254 + HP15_p187g61 0.40 -0.6
56,262 - HP15_p187g61 0.41 -0.1
56,262 - HP15_p187g61 0.41 -0.4
56,262 - HP15_p187g61 0.41 -0.8
56,283 - HP15_p187g61 0.43 -0.3
56,364 - HP15_p187g61 0.51 +0.3
56,382 + HP15_p187g61 0.53 -1.5
56,397 - HP15_p187g61 0.54 +1.9
56,420 - HP15_p187g61 0.56 +0.7
56,475 + HP15_p187g61 0.62 -0.7
56,475 + HP15_p187g61 0.62 +0.3
56,483 - HP15_p187g61 0.62 -0.3
56,483 - HP15_p187g61 0.62 +0.3
56,519 + HP15_p187g61 0.66 -0.0
56,562 - HP15_p187g61 0.70 -0.1
56,579 + HP15_p187g61 0.72 +0.1
56,579 + HP15_p187g61 0.72 -0.2
56,587 - HP15_p187g61 0.72 -0.5
56,661 + HP15_p187g61 0.79 -0.3
56,686 + HP15_p187g61 0.82 +1.0
56,686 + HP15_p187g61 0.82 +0.2
56,766 + HP15_p187g61 0.90 +0.2
56,769 - HP15_p187g61 0.90 +0.4

Or see this region's nucleotide sequence