Experiment: m.b. Cisplatin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_4124 and HP15_4125 are separated by 17 nucleotides HP15_4125 and HP15_4126 are separated by 53 nucleotides HP15_4126 and HP15_4127 overlap by 4 nucleotides
HP15_4124: HP15_4124 - protein containing 4Fe-4S ferredoxin, iron-sulfur binding, subgroup domains, at 4,359,785 to 4,361,698
_4124
HP15_4125: HP15_4125 - Mrp/NBP35 family protein, at 4,361,716 to 4,362,564
_4125
HP15_4126: HP15_4126 - conserved hypothetical protein, at 4,362,618 to 4,363,265
_4126
HP15_4127: HP15_4127 - conserved hypothetical protein, at 4,363,262 to 4,363,738
_4127
Position (kb)
4361
4362
4363 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4360.716 kb on + strand, within HP15_4124 at 4360.724 kb on - strand, within HP15_4124 at 4360.744 kb on + strand, within HP15_4124 at 4360.762 kb on - strand, within HP15_4124 at 4360.772 kb on + strand, within HP15_4124 at 4360.896 kb on + strand, within HP15_4124 at 4360.964 kb on + strand, within HP15_4124 at 4360.964 kb on + strand, within HP15_4124 at 4360.964 kb on + strand, within HP15_4124 at 4360.995 kb on + strand, within HP15_4124 at 4361.003 kb on - strand, within HP15_4124 at 4361.003 kb on - strand, within HP15_4124 at 4361.031 kb on - strand, within HP15_4124 at 4361.035 kb on + strand, within HP15_4124 at 4361.041 kb on - strand, within HP15_4124 at 4361.043 kb on - strand, within HP15_4124 at 4361.043 kb on - strand, within HP15_4124 at 4361.043 kb on - strand, within HP15_4124 at 4361.043 kb on - strand, within HP15_4124 at 4361.112 kb on - strand, within HP15_4124 at 4361.112 kb on - strand, within HP15_4124 at 4361.127 kb on + strand, within HP15_4124 at 4361.135 kb on - strand, within HP15_4124 at 4361.215 kb on + strand, within HP15_4124 at 4361.278 kb on - strand, within HP15_4124 at 4361.423 kb on - strand, within HP15_4124 at 4361.425 kb on + strand, within HP15_4124 at 4361.433 kb on - strand, within HP15_4124 at 4361.433 kb on - strand, within HP15_4124 at 4361.450 kb on - strand, within HP15_4124 at 4361.460 kb on + strand, within HP15_4124 at 4361.460 kb on + strand, within HP15_4124 at 4361.468 kb on - strand, within HP15_4124 at 4361.468 kb on - strand, within HP15_4124 at 4361.479 kb on + strand, within HP15_4124 at 4361.519 kb on - strand at 4361.522 kb on - strand at 4361.551 kb on - strand at 4361.623 kb on - strand at 4361.712 kb on + strand at 4361.720 kb on - strand at 4361.720 kb on - strand at 4361.720 kb on - strand at 4361.727 kb on - strand at 4361.883 kb on - strand, within HP15_4125 at 4361.927 kb on + strand, within HP15_4125 at 4361.953 kb on - strand, within HP15_4125 at 4362.019 kb on - strand, within HP15_4125 at 4362.159 kb on + strand, within HP15_4125 at 4362.169 kb on + strand, within HP15_4125 at 4362.172 kb on - strand, within HP15_4125 at 4362.174 kb on + strand, within HP15_4125 at 4362.226 kb on + strand, within HP15_4125 at 4362.234 kb on - strand, within HP15_4125 at 4362.234 kb on - strand, within HP15_4125 at 4362.234 kb on - strand, within HP15_4125 at 4362.234 kb on - strand, within HP15_4125 at 4362.302 kb on - strand, within HP15_4125 at 4362.460 kb on + strand, within HP15_4125 at 4362.503 kb on - strand at 4362.541 kb on - strand at 4362.548 kb on - strand at 4362.573 kb on + strand at 4362.576 kb on - strand at 4362.675 kb on + strand at 4362.677 kb on + strand at 4362.677 kb on + strand at 4362.682 kb on + strand at 4362.683 kb on - strand, within HP15_4126 at 4362.683 kb on - strand, within HP15_4126 at 4362.685 kb on - strand, within HP15_4126 at 4362.719 kb on - strand, within HP15_4126 at 4362.719 kb on - strand, within HP15_4126 at 4362.719 kb on - strand, within HP15_4126 at 4362.845 kb on + strand, within HP15_4126 at 4362.859 kb on - strand, within HP15_4126 at 4362.871 kb on - strand, within HP15_4126 at 4362.872 kb on - strand, within HP15_4126 at 4362.908 kb on + strand, within HP15_4126 at 4363.061 kb on - strand, within HP15_4126 at 4363.147 kb on - strand, within HP15_4126 at 4363.157 kb on + strand, within HP15_4126 at 4363.164 kb on + strand, within HP15_4126 at 4363.165 kb on - strand, within HP15_4126 at 4363.273 kb on - strand at 4363.317 kb on + strand, within HP15_4127 at 4363.384 kb on - strand, within HP15_4127 at 4363.436 kb on - strand, within HP15_4127 at 4363.442 kb on - strand, within HP15_4127 at 4363.514 kb on - strand, within HP15_4127
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml remove 4,360,716 + HP15_4124 0.49 -0.2 4,360,724 - HP15_4124 0.49 +0.9 4,360,744 + HP15_4124 0.50 +2.9 4,360,762 - HP15_4124 0.51 +0.1 4,360,772 + HP15_4124 0.52 +0.6 4,360,896 + HP15_4124 0.58 -0.4 4,360,964 + HP15_4124 0.62 +3.2 4,360,964 + HP15_4124 0.62 -0.4 4,360,964 + HP15_4124 0.62 +0.4 4,360,995 + HP15_4124 0.63 +0.2 4,361,003 - HP15_4124 0.64 +0.4 4,361,003 - HP15_4124 0.64 +0.6 4,361,031 - HP15_4124 0.65 -0.0 4,361,035 + HP15_4124 0.65 -1.4 4,361,041 - HP15_4124 0.66 +1.3 4,361,043 - HP15_4124 0.66 -0.3 4,361,043 - HP15_4124 0.66 -0.2 4,361,043 - HP15_4124 0.66 +2.9 4,361,043 - HP15_4124 0.66 +0.3 4,361,112 - HP15_4124 0.69 +1.7 4,361,112 - HP15_4124 0.69 +0.1 4,361,127 + HP15_4124 0.70 +0.1 4,361,135 - HP15_4124 0.71 -0.5 4,361,215 + HP15_4124 0.75 +1.4 4,361,278 - HP15_4124 0.78 +0.5 4,361,423 - HP15_4124 0.86 -0.5 4,361,425 + HP15_4124 0.86 -1.1 4,361,433 - HP15_4124 0.86 -0.1 4,361,433 - HP15_4124 0.86 -0.0 4,361,450 - HP15_4124 0.87 -0.5 4,361,460 + HP15_4124 0.88 +0.1 4,361,460 + HP15_4124 0.88 +0.7 4,361,468 - HP15_4124 0.88 -0.4 4,361,468 - HP15_4124 0.88 -0.9 4,361,479 + HP15_4124 0.89 +0.2 4,361,519 - +0.4 4,361,522 - +0.2 4,361,551 - -0.1 4,361,623 - -0.2 4,361,712 + -0.0 4,361,720 - +1.9 4,361,720 - +0.1 4,361,720 - -0.5 4,361,727 - +2.5 4,361,883 - HP15_4125 0.20 +0.0 4,361,927 + HP15_4125 0.25 -0.2 4,361,953 - HP15_4125 0.28 -2.4 4,362,019 - HP15_4125 0.36 -0.2 4,362,159 + HP15_4125 0.52 +0.1 4,362,169 + HP15_4125 0.53 -1.1 4,362,172 - HP15_4125 0.54 +0.0 4,362,174 + HP15_4125 0.54 +0.9 4,362,226 + HP15_4125 0.60 +1.7 4,362,234 - HP15_4125 0.61 +0.1 4,362,234 - HP15_4125 0.61 -1.4 4,362,234 - HP15_4125 0.61 -0.3 4,362,234 - HP15_4125 0.61 -1.0 4,362,302 - HP15_4125 0.69 -0.4 4,362,460 + HP15_4125 0.88 -0.2 4,362,503 - +0.2 4,362,541 - -0.4 4,362,548 - -0.6 4,362,573 + -1.4 4,362,576 - +0.7 4,362,675 + -2.9 4,362,677 + +0.2 4,362,677 + +0.4 4,362,682 + +0.9 4,362,683 - HP15_4126 0.10 +0.3 4,362,683 - HP15_4126 0.10 -0.4 4,362,685 - HP15_4126 0.10 -0.2 4,362,719 - HP15_4126 0.16 -0.2 4,362,719 - HP15_4126 0.16 +0.1 4,362,719 - HP15_4126 0.16 -2.2 4,362,845 + HP15_4126 0.35 -2.1 4,362,859 - HP15_4126 0.37 +1.1 4,362,871 - HP15_4126 0.39 -0.1 4,362,872 - HP15_4126 0.39 +0.2 4,362,908 + HP15_4126 0.45 +0.0 4,363,061 - HP15_4126 0.68 +0.1 4,363,147 - HP15_4126 0.82 -1.1 4,363,157 + HP15_4126 0.83 +0.9 4,363,164 + HP15_4126 0.84 -0.4 4,363,165 - HP15_4126 0.84 -0.2 4,363,273 - -1.0 4,363,317 + HP15_4127 0.12 +0.0 4,363,384 - HP15_4127 0.26 -0.3 4,363,436 - HP15_4127 0.36 +0.9 4,363,442 - HP15_4127 0.38 -0.1 4,363,514 - HP15_4127 0.53 +0.0
Or see this region's nucleotide sequence