Strain Fitness in Marinobacter adhaerens HP15 around HP15_4085

Experiment: m.b. Cisplatin 0.025 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_4083 and HP15_4084 overlap by 4 nucleotidesHP15_4084 and HP15_4085 are separated by 37 nucleotidesHP15_4085 and HP15_4086 are separated by 166 nucleotidesHP15_4086 and HP15_4087 are separated by 18 nucleotides HP15_4083: HP15_4083 - ethanolamine ammonia-lyase heavy chain, at 4,315,645 to 4,317,045 _4083 HP15_4084: HP15_4084 - ethanolamine ammonia-lyase small subunit, at 4,317,042 to 4,317,872 _4084 HP15_4085: HP15_4085 - protein containing methyltransferase type 12 domain, at 4,317,910 to 4,318,665 _4085 HP15_4086: HP15_4086 - ATPase, ParA family protein, at 4,318,832 to 4,319,572 _4086 HP15_4087: HP15_4087 - transcriptional regulator, GntR family, at 4,319,591 to 4,320,322 _4087 Position (kb) 4317 4318 4319Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 4317.019 kb on + strandat 4317.038 kb on + strandat 4317.038 kb on + strandat 4317.046 kb on - strandat 4317.046 kb on - strandat 4317.046 kb on - strandat 4317.046 kb on - strandat 4317.056 kb on - strandat 4317.066 kb on + strandat 4317.118 kb on - strandat 4317.209 kb on + strand, within HP15_4084at 4317.391 kb on - strand, within HP15_4084at 4317.488 kb on + strand, within HP15_4084at 4317.598 kb on + strand, within HP15_4084at 4317.654 kb on - strand, within HP15_4084at 4317.660 kb on - strand, within HP15_4084at 4317.810 kb on + strandat 4317.818 kb on - strandat 4318.179 kb on + strand, within HP15_4085at 4318.187 kb on - strand, within HP15_4085at 4318.234 kb on - strand, within HP15_4085at 4318.283 kb on + strand, within HP15_4085at 4318.288 kb on + strand, within HP15_4085at 4318.368 kb on + strand, within HP15_4085at 4318.394 kb on + strand, within HP15_4085at 4318.441 kb on + strand, within HP15_4085at 4318.441 kb on + strand, within HP15_4085at 4318.441 kb on + strand, within HP15_4085at 4318.441 kb on + strand, within HP15_4085at 4318.441 kb on + strand, within HP15_4085at 4318.448 kb on - strand, within HP15_4085at 4318.449 kb on - strand, within HP15_4085at 4318.449 kb on - strand, within HP15_4085at 4318.482 kb on - strand, within HP15_4085at 4318.512 kb on + strand, within HP15_4085at 4318.581 kb on - strand, within HP15_4085at 4318.626 kb on - strandat 4318.760 kb on - strandat 4318.765 kb on - strandat 4318.839 kb on - strandat 4318.864 kb on - strandat 4318.923 kb on + strand, within HP15_4086at 4318.923 kb on + strand, within HP15_4086at 4318.923 kb on + strand, within HP15_4086at 4318.931 kb on - strand, within HP15_4086at 4318.933 kb on + strand, within HP15_4086at 4318.933 kb on + strand, within HP15_4086at 4318.941 kb on - strand, within HP15_4086at 4318.941 kb on - strand, within HP15_4086at 4318.941 kb on - strand, within HP15_4086at 4319.025 kb on - strand, within HP15_4086at 4319.153 kb on - strand, within HP15_4086at 4319.192 kb on + strand, within HP15_4086at 4319.192 kb on + strand, within HP15_4086at 4319.364 kb on - strand, within HP15_4086at 4319.399 kb on - strand, within HP15_4086at 4319.413 kb on + strand, within HP15_4086at 4319.425 kb on + strand, within HP15_4086at 4319.566 kb on + strandat 4319.574 kb on - strandat 4319.597 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
remove
4,317,019 + +0.5
4,317,038 + -0.7
4,317,038 + +0.2
4,317,046 - +0.7
4,317,046 - -0.2
4,317,046 - +0.4
4,317,046 - -0.7
4,317,056 - -0.5
4,317,066 + +0.1
4,317,118 - +0.1
4,317,209 + HP15_4084 0.20 -0.8
4,317,391 - HP15_4084 0.42 -0.1
4,317,488 + HP15_4084 0.54 +0.4
4,317,598 + HP15_4084 0.67 +0.3
4,317,654 - HP15_4084 0.74 +0.8
4,317,660 - HP15_4084 0.74 -1.1
4,317,810 + -4.5
4,317,818 - -0.2
4,318,179 + HP15_4085 0.36 +0.6
4,318,187 - HP15_4085 0.37 -0.5
4,318,234 - HP15_4085 0.43 -0.6
4,318,283 + HP15_4085 0.49 -0.5
4,318,288 + HP15_4085 0.50 +0.9
4,318,368 + HP15_4085 0.61 -0.5
4,318,394 + HP15_4085 0.64 +0.4
4,318,441 + HP15_4085 0.70 +1.1
4,318,441 + HP15_4085 0.70 +0.3
4,318,441 + HP15_4085 0.70 +0.1
4,318,441 + HP15_4085 0.70 +0.7
4,318,441 + HP15_4085 0.70 -0.5
4,318,448 - HP15_4085 0.71 -0.8
4,318,449 - HP15_4085 0.71 +0.4
4,318,449 - HP15_4085 0.71 -0.1
4,318,482 - HP15_4085 0.76 -2.3
4,318,512 + HP15_4085 0.80 +0.5
4,318,581 - HP15_4085 0.89 +0.1
4,318,626 - -0.2
4,318,760 - +0.0
4,318,765 - -0.2
4,318,839 - -0.3
4,318,864 - -0.7
4,318,923 + HP15_4086 0.12 +0.8
4,318,923 + HP15_4086 0.12 -2.1
4,318,923 + HP15_4086 0.12 -0.1
4,318,931 - HP15_4086 0.13 -1.2
4,318,933 + HP15_4086 0.14 -1.6
4,318,933 + HP15_4086 0.14 -0.1
4,318,941 - HP15_4086 0.15 -0.2
4,318,941 - HP15_4086 0.15 -0.5
4,318,941 - HP15_4086 0.15 -0.2
4,319,025 - HP15_4086 0.26 -0.0
4,319,153 - HP15_4086 0.43 -0.1
4,319,192 + HP15_4086 0.49 +0.1
4,319,192 + HP15_4086 0.49 +0.2
4,319,364 - HP15_4086 0.72 +1.0
4,319,399 - HP15_4086 0.77 +0.8
4,319,413 + HP15_4086 0.78 +0.8
4,319,425 + HP15_4086 0.80 +0.5
4,319,566 + +0.3
4,319,574 - +0.9
4,319,597 - +0.8

Or see this region's nucleotide sequence