Experiment: m.b. Cisplatin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3951 and HP15_3952 are separated by 279 nucleotides HP15_3952 and HP15_3953 are separated by 87 nucleotides HP15_3953 and HP15_3954 are separated by 30 nucleotides HP15_3954 and HP15_3955 overlap by 14 nucleotides
HP15_3951: HP15_3951 - signal-transduction protein, at 4,181,222 to 4,183,096
_3951
HP15_3952: HP15_3952 - hypothetical protein, at 4,183,376 to 4,183,489
_3952
HP15_3953: HP15_3953 - outer membrane receptor for transport of vitamin B, at 4,183,577 to 4,185,415
_3953
HP15_3954: HP15_3954 - substrate-binding periplasmic (PBP) ABC transporter protein, at 4,185,446 to 4,186,330
_3954
HP15_3955: HP15_3955 - bacterial transport system permease protein, at 4,186,317 to 4,187,291
_3955
Position (kb)
4183
4184
4185
4186 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 4182.642 kb on + strand, within HP15_3951 at 4182.643 kb on + strand, within HP15_3951 at 4182.651 kb on - strand, within HP15_3951 at 4182.651 kb on - strand, within HP15_3951 at 4182.849 kb on - strand, within HP15_3951 at 4182.865 kb on - strand, within HP15_3951 at 4182.878 kb on + strand, within HP15_3951 at 4182.914 kb on - strand at 4182.958 kb on + strand at 4182.978 kb on + strand at 4183.024 kb on - strand at 4183.093 kb on + strand at 4183.115 kb on - strand at 4183.166 kb on - strand at 4183.184 kb on - strand at 4183.211 kb on + strand at 4183.345 kb on - strand at 4183.493 kb on - strand at 4183.493 kb on - strand at 4183.557 kb on - strand at 4183.671 kb on + strand at 4183.671 kb on + strand at 4183.671 kb on + strand at 4183.679 kb on - strand at 4183.679 kb on - strand at 4183.679 kb on - strand at 4183.713 kb on + strand at 4183.819 kb on - strand, within HP15_3953 at 4184.005 kb on + strand, within HP15_3953 at 4184.082 kb on - strand, within HP15_3953 at 4184.143 kb on + strand, within HP15_3953 at 4184.164 kb on - strand, within HP15_3953 at 4184.288 kb on - strand, within HP15_3953 at 4184.310 kb on - strand, within HP15_3953 at 4184.316 kb on - strand, within HP15_3953 at 4184.434 kb on - strand, within HP15_3953 at 4184.448 kb on - strand, within HP15_3953 at 4184.532 kb on - strand, within HP15_3953 at 4184.598 kb on - strand, within HP15_3953 at 4184.603 kb on + strand, within HP15_3953 at 4184.609 kb on + strand, within HP15_3953 at 4184.617 kb on - strand, within HP15_3953 at 4184.769 kb on + strand, within HP15_3953 at 4184.848 kb on + strand, within HP15_3953 at 4184.910 kb on - strand, within HP15_3953 at 4185.023 kb on - strand, within HP15_3953 at 4185.026 kb on + strand, within HP15_3953 at 4185.229 kb on - strand, within HP15_3953 at 4185.248 kb on + strand at 4185.506 kb on - strand at 4185.516 kb on - strand at 4185.569 kb on - strand, within HP15_3954 at 4185.623 kb on + strand, within HP15_3954 at 4185.870 kb on - strand, within HP15_3954 at 4185.885 kb on - strand, within HP15_3954 at 4185.892 kb on - strand, within HP15_3954 at 4185.901 kb on - strand, within HP15_3954 at 4185.964 kb on - strand, within HP15_3954 at 4186.039 kb on + strand, within HP15_3954 at 4186.040 kb on + strand, within HP15_3954 at 4186.041 kb on + strand, within HP15_3954 at 4186.051 kb on + strand, within HP15_3954 at 4186.067 kb on - strand, within HP15_3954 at 4186.076 kb on - strand, within HP15_3954 at 4186.094 kb on + strand, within HP15_3954 at 4186.233 kb on - strand, within HP15_3954 at 4186.267 kb on + strand at 4186.269 kb on + strand at 4186.269 kb on + strand at 4186.283 kb on + strand at 4186.302 kb on + strand at 4186.315 kb on - strand at 4186.335 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml remove 4,182,642 + HP15_3951 0.76 -2.1 4,182,643 + HP15_3951 0.76 -2.3 4,182,651 - HP15_3951 0.76 -3.5 4,182,651 - HP15_3951 0.76 -2.9 4,182,849 - HP15_3951 0.87 -3.2 4,182,865 - HP15_3951 0.88 +2.5 4,182,878 + HP15_3951 0.88 -4.1 4,182,914 - -3.6 4,182,958 + -2.8 4,182,978 + -3.6 4,183,024 - -4.2 4,183,093 + -1.3 4,183,115 - -0.9 4,183,166 - +0.5 4,183,184 - +1.2 4,183,211 + +1.1 4,183,345 - -0.3 4,183,493 - -1.4 4,183,493 - +0.5 4,183,557 - +1.3 4,183,671 + +0.1 4,183,671 + +0.1 4,183,671 + -0.0 4,183,679 - -0.1 4,183,679 - -0.4 4,183,679 - -0.0 4,183,713 + +0.3 4,183,819 - HP15_3953 0.13 -0.0 4,184,005 + HP15_3953 0.23 +0.3 4,184,082 - HP15_3953 0.27 +0.6 4,184,143 + HP15_3953 0.31 +0.1 4,184,164 - HP15_3953 0.32 -0.2 4,184,288 - HP15_3953 0.39 -0.1 4,184,310 - HP15_3953 0.40 +0.5 4,184,316 - HP15_3953 0.40 +0.4 4,184,434 - HP15_3953 0.47 -1.8 4,184,448 - HP15_3953 0.47 +0.0 4,184,532 - HP15_3953 0.52 +0.1 4,184,598 - HP15_3953 0.56 +0.5 4,184,603 + HP15_3953 0.56 -0.5 4,184,609 + HP15_3953 0.56 +0.6 4,184,617 - HP15_3953 0.57 -0.7 4,184,769 + HP15_3953 0.65 +0.5 4,184,848 + HP15_3953 0.69 -2.2 4,184,910 - HP15_3953 0.72 -0.3 4,185,023 - HP15_3953 0.79 -0.1 4,185,026 + HP15_3953 0.79 -0.1 4,185,229 - HP15_3953 0.90 -1.5 4,185,248 + +0.1 4,185,506 - -0.5 4,185,516 - +0.9 4,185,569 - HP15_3954 0.14 +0.8 4,185,623 + HP15_3954 0.20 +0.7 4,185,870 - HP15_3954 0.48 +0.9 4,185,885 - HP15_3954 0.50 -0.2 4,185,892 - HP15_3954 0.50 +0.3 4,185,901 - HP15_3954 0.51 +1.1 4,185,964 - HP15_3954 0.59 -0.1 4,186,039 + HP15_3954 0.67 +0.2 4,186,040 + HP15_3954 0.67 -0.1 4,186,041 + HP15_3954 0.67 -0.4 4,186,051 + HP15_3954 0.68 -2.8 4,186,067 - HP15_3954 0.70 -0.4 4,186,076 - HP15_3954 0.71 -0.2 4,186,094 + HP15_3954 0.73 -0.5 4,186,233 - HP15_3954 0.89 +0.5 4,186,267 + -0.6 4,186,269 + +0.3 4,186,269 + +0.1 4,186,283 + +0.5 4,186,302 + -0.9 4,186,315 - -0.4 4,186,335 + +0.6
Or see this region's nucleotide sequence