Experiment: m.b. Cisplatin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3940 and HP15_3941 are separated by 272 nucleotides HP15_3941 and HP15_3942 are separated by 143 nucleotides HP15_3942 and HP15_3943 overlap by 12 nucleotides
HP15_3940: HP15_3940 - transcriptional regulator, IclR family protein, at 4,168,942 to 4,169,766
_3940
HP15_3941: HP15_3941 - fatty oxidation complex alpha subunit, at 4,170,039 to 4,172,147
_3941
HP15_3942: HP15_3942 - hypothetical protein, at 4,172,291 to 4,172,410
_3942
HP15_3943: HP15_3943 - acetyl-CoA C-acyltransferase, at 4,172,399 to 4,173,496
_3943
Position (kb)
4170
4171
4172
4173 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 4169.056 kb on - strand, within HP15_3940 at 4169.149 kb on + strand, within HP15_3940 at 4169.157 kb on - strand, within HP15_3940 at 4169.158 kb on - strand, within HP15_3940 at 4169.158 kb on - strand, within HP15_3940 at 4169.240 kb on - strand, within HP15_3940 at 4169.271 kb on + strand, within HP15_3940 at 4169.285 kb on - strand, within HP15_3940 at 4169.413 kb on - strand, within HP15_3940 at 4169.536 kb on + strand, within HP15_3940 at 4169.547 kb on + strand, within HP15_3940 at 4169.581 kb on - strand, within HP15_3940 at 4169.591 kb on - strand, within HP15_3940 at 4169.656 kb on + strand, within HP15_3940 at 4169.656 kb on + strand, within HP15_3940 at 4169.661 kb on + strand, within HP15_3940 at 4169.664 kb on - strand, within HP15_3940 at 4169.664 kb on - strand, within HP15_3940 at 4169.669 kb on - strand, within HP15_3940 at 4169.669 kb on - strand, within HP15_3940 at 4169.793 kb on - strand at 4169.833 kb on - strand at 4169.862 kb on - strand at 4170.163 kb on - strand at 4170.175 kb on + strand at 4170.191 kb on + strand at 4170.199 kb on - strand at 4170.293 kb on + strand, within HP15_3941 at 4170.394 kb on - strand, within HP15_3941 at 4170.420 kb on - strand, within HP15_3941 at 4170.433 kb on + strand, within HP15_3941 at 4170.506 kb on - strand, within HP15_3941 at 4170.544 kb on + strand, within HP15_3941 at 4170.552 kb on - strand, within HP15_3941 at 4170.681 kb on + strand, within HP15_3941 at 4170.707 kb on + strand, within HP15_3941 at 4170.758 kb on - strand, within HP15_3941 at 4170.779 kb on - strand, within HP15_3941 at 4170.804 kb on + strand, within HP15_3941 at 4170.825 kb on - strand, within HP15_3941 at 4170.825 kb on - strand, within HP15_3941 at 4170.869 kb on - strand, within HP15_3941 at 4170.914 kb on + strand, within HP15_3941 at 4170.922 kb on - strand, within HP15_3941 at 4170.922 kb on - strand, within HP15_3941 at 4171.063 kb on - strand, within HP15_3941 at 4171.080 kb on + strand, within HP15_3941 at 4171.155 kb on - strand, within HP15_3941 at 4171.223 kb on - strand, within HP15_3941 at 4171.358 kb on - strand, within HP15_3941 at 4171.426 kb on - strand, within HP15_3941 at 4171.426 kb on - strand, within HP15_3941 at 4171.633 kb on + strand, within HP15_3941 at 4171.633 kb on + strand, within HP15_3941 at 4171.716 kb on + strand, within HP15_3941 at 4171.726 kb on + strand, within HP15_3941 at 4171.748 kb on - strand, within HP15_3941 at 4171.830 kb on + strand, within HP15_3941 at 4171.890 kb on - strand, within HP15_3941 at 4172.149 kb on - strand at 4172.253 kb on + strand at 4172.273 kb on - strand at 4172.280 kb on + strand at 4172.399 kb on - strand at 4172.489 kb on - strand at 4172.922 kb on - strand, within HP15_3943 at 4173.004 kb on - strand, within HP15_3943 at 4173.024 kb on + strand, within HP15_3943 at 4173.034 kb on + strand, within HP15_3943 at 4173.051 kb on + strand, within HP15_3943 at 4173.089 kb on + strand, within HP15_3943 at 4173.089 kb on + strand, within HP15_3943 at 4173.089 kb on + strand, within HP15_3943 at 4173.089 kb on + strand, within HP15_3943 at 4173.120 kb on + strand, within HP15_3943 at 4173.134 kb on + strand, within HP15_3943
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml remove 4,169,056 - HP15_3940 0.14 -0.2 4,169,149 + HP15_3940 0.25 -1.4 4,169,157 - HP15_3940 0.26 -1.1 4,169,158 - HP15_3940 0.26 -0.8 4,169,158 - HP15_3940 0.26 -0.5 4,169,240 - HP15_3940 0.36 -1.6 4,169,271 + HP15_3940 0.40 -0.5 4,169,285 - HP15_3940 0.42 -1.0 4,169,413 - HP15_3940 0.57 +0.1 4,169,536 + HP15_3940 0.72 -0.0 4,169,547 + HP15_3940 0.73 -0.8 4,169,581 - HP15_3940 0.77 -0.9 4,169,591 - HP15_3940 0.79 -0.0 4,169,656 + HP15_3940 0.87 +0.2 4,169,656 + HP15_3940 0.87 -0.1 4,169,661 + HP15_3940 0.87 -0.7 4,169,664 - HP15_3940 0.88 -0.6 4,169,664 - HP15_3940 0.88 -0.3 4,169,669 - HP15_3940 0.88 -1.3 4,169,669 - HP15_3940 0.88 -0.9 4,169,793 - -0.5 4,169,833 - +0.8 4,169,862 - +0.1 4,170,163 - -3.3 4,170,175 + -1.5 4,170,191 + -0.7 4,170,199 - -3.3 4,170,293 + HP15_3941 0.12 -1.0 4,170,394 - HP15_3941 0.17 -2.4 4,170,420 - HP15_3941 0.18 -3.1 4,170,433 + HP15_3941 0.19 -1.7 4,170,506 - HP15_3941 0.22 -1.5 4,170,544 + HP15_3941 0.24 -1.8 4,170,552 - HP15_3941 0.24 -2.1 4,170,681 + HP15_3941 0.30 +0.2 4,170,707 + HP15_3941 0.32 +0.4 4,170,758 - HP15_3941 0.34 -0.7 4,170,779 - HP15_3941 0.35 -1.7 4,170,804 + HP15_3941 0.36 +0.6 4,170,825 - HP15_3941 0.37 -1.4 4,170,825 - HP15_3941 0.37 -2.0 4,170,869 - HP15_3941 0.39 -3.3 4,170,914 + HP15_3941 0.41 -0.1 4,170,922 - HP15_3941 0.42 -1.9 4,170,922 - HP15_3941 0.42 -1.6 4,171,063 - HP15_3941 0.49 -1.2 4,171,080 + HP15_3941 0.49 -3.9 4,171,155 - HP15_3941 0.53 -3.6 4,171,223 - HP15_3941 0.56 -1.9 4,171,358 - HP15_3941 0.63 -3.3 4,171,426 - HP15_3941 0.66 -3.6 4,171,426 - HP15_3941 0.66 +0.5 4,171,633 + HP15_3941 0.76 -2.4 4,171,633 + HP15_3941 0.76 -3.6 4,171,716 + HP15_3941 0.80 -1.3 4,171,726 + HP15_3941 0.80 -2.9 4,171,748 - HP15_3941 0.81 -3.8 4,171,830 + HP15_3941 0.85 -3.7 4,171,890 - HP15_3941 0.88 -3.3 4,172,149 - -2.3 4,172,253 + +0.8 4,172,273 - -0.3 4,172,280 + +0.2 4,172,399 - +0.2 4,172,489 - -1.2 4,172,922 - HP15_3943 0.48 -1.1 4,173,004 - HP15_3943 0.55 -0.3 4,173,024 + HP15_3943 0.57 -0.4 4,173,034 + HP15_3943 0.58 +0.5 4,173,051 + HP15_3943 0.59 -0.4 4,173,089 + HP15_3943 0.63 +0.0 4,173,089 + HP15_3943 0.63 +0.6 4,173,089 + HP15_3943 0.63 +0.0 4,173,089 + HP15_3943 0.63 +0.3 4,173,120 + HP15_3943 0.66 +0.2 4,173,134 + HP15_3943 0.67 +0.2
Or see this region's nucleotide sequence