Strain Fitness in Marinobacter adhaerens HP15 around HP15_3901

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3899 and HP15_3900 overlap by 4 nucleotidesHP15_3900 and HP15_3901 are separated by 7 nucleotidesHP15_3901 and HP15_3902 are separated by 133 nucleotidesHP15_3902 and HP15_3903 are separated by 9 nucleotides HP15_3899: HP15_3899 - RNA polymerase, sigma-24 subunit, ECF subfamily, at 4,129,839 to 4,130,402 _3899 HP15_3900: HP15_3900 - conserved hypothetical protein, at 4,130,399 to 4,131,100 _3900 HP15_3901: HP15_3901 - signal transduction protein, at 4,131,108 to 4,132,529 _3901 HP15_3902: HP15_3902 - hypothetical protein, at 4,132,663 to 4,132,806 _3902 HP15_3903: HP15_3903 - methionine import ATP-binding protein MetN 2, at 4,132,816 to 4,133,748 _3903 Position (kb) 4131 4132 4133Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4130.183 kb on + strand, within HP15_3899at 4130.188 kb on + strand, within HP15_3899at 4130.191 kb on - strand, within HP15_3899at 4130.191 kb on - strand, within HP15_3899at 4130.212 kb on + strand, within HP15_3899at 4130.221 kb on + strand, within HP15_3899at 4130.292 kb on - strand, within HP15_3899at 4130.376 kb on - strandat 4130.397 kb on - strandat 4130.619 kb on + strand, within HP15_3900at 4130.650 kb on - strand, within HP15_3900at 4130.668 kb on + strand, within HP15_3900at 4130.668 kb on + strand, within HP15_3900at 4130.676 kb on - strand, within HP15_3900at 4130.700 kb on - strand, within HP15_3900at 4130.794 kb on - strand, within HP15_3900at 4130.979 kb on - strand, within HP15_3900at 4130.989 kb on - strand, within HP15_3900at 4130.998 kb on - strand, within HP15_3900at 4131.110 kb on + strandat 4131.120 kb on + strandat 4131.120 kb on + strandat 4131.143 kb on - strandat 4131.176 kb on + strandat 4131.191 kb on + strandat 4131.196 kb on + strandat 4131.214 kb on + strandat 4131.222 kb on - strandat 4131.222 kb on - strandat 4131.328 kb on + strand, within HP15_3901at 4131.395 kb on + strand, within HP15_3901at 4131.463 kb on + strand, within HP15_3901at 4131.473 kb on + strand, within HP15_3901at 4131.509 kb on - strand, within HP15_3901at 4131.697 kb on + strand, within HP15_3901at 4131.704 kb on + strand, within HP15_3901at 4131.726 kb on - strand, within HP15_3901at 4131.782 kb on - strand, within HP15_3901at 4131.802 kb on + strand, within HP15_3901at 4131.802 kb on + strand, within HP15_3901at 4131.810 kb on - strand, within HP15_3901at 4131.812 kb on + strand, within HP15_3901at 4131.860 kb on - strand, within HP15_3901at 4131.923 kb on + strand, within HP15_3901at 4131.965 kb on - strand, within HP15_3901at 4132.036 kb on - strand, within HP15_3901at 4132.178 kb on - strand, within HP15_3901at 4132.203 kb on - strand, within HP15_3901at 4132.262 kb on + strand, within HP15_3901at 4132.262 kb on + strand, within HP15_3901at 4132.270 kb on - strand, within HP15_3901at 4132.270 kb on - strand, within HP15_3901at 4132.282 kb on + strand, within HP15_3901at 4132.318 kb on + strand, within HP15_3901at 4132.318 kb on + strand, within HP15_3901at 4132.318 kb on + strand, within HP15_3901at 4132.318 kb on + strand, within HP15_3901at 4132.318 kb on + strand, within HP15_3901at 4132.326 kb on - strand, within HP15_3901at 4132.345 kb on - strand, within HP15_3901at 4132.350 kb on - strand, within HP15_3901at 4132.372 kb on - strand, within HP15_3901at 4132.425 kb on + strandat 4132.532 kb on - strandat 4132.539 kb on + strandat 4132.614 kb on - strandat 4132.716 kb on + strand, within HP15_3902at 4132.719 kb on - strand, within HP15_3902at 4132.919 kb on + strand, within HP15_3903at 4132.963 kb on + strand, within HP15_3903at 4133.010 kb on + strand, within HP15_3903at 4133.017 kb on - strand, within HP15_3903at 4133.400 kb on + strand, within HP15_3903at 4133.409 kb on - strand, within HP15_3903at 4133.480 kb on + strand, within HP15_3903at 4133.514 kb on - strand, within HP15_3903

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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4,130,183 + HP15_3899 0.61 +0.2
4,130,188 + HP15_3899 0.62 +0.4
4,130,191 - HP15_3899 0.62 -0.4
4,130,191 - HP15_3899 0.62 -0.3
4,130,212 + HP15_3899 0.66 +0.0
4,130,221 + HP15_3899 0.68 -0.4
4,130,292 - HP15_3899 0.80 +0.5
4,130,376 - +0.5
4,130,397 - +0.4
4,130,619 + HP15_3900 0.31 +0.8
4,130,650 - HP15_3900 0.36 -0.4
4,130,668 + HP15_3900 0.38 +0.2
4,130,668 + HP15_3900 0.38 +1.5
4,130,676 - HP15_3900 0.39 +0.1
4,130,700 - HP15_3900 0.43 +0.2
4,130,794 - HP15_3900 0.56 -0.3
4,130,979 - HP15_3900 0.83 -0.2
4,130,989 - HP15_3900 0.84 -0.1
4,130,998 - HP15_3900 0.85 +1.1
4,131,110 + +1.1
4,131,120 + +0.9
4,131,120 + -0.8
4,131,143 - +1.2
4,131,176 + -0.2
4,131,191 + +0.0
4,131,196 + +0.5
4,131,214 + -0.2
4,131,222 - -0.3
4,131,222 - +1.8
4,131,328 + HP15_3901 0.15 +0.8
4,131,395 + HP15_3901 0.20 -2.6
4,131,463 + HP15_3901 0.25 -0.6
4,131,473 + HP15_3901 0.26 -0.2
4,131,509 - HP15_3901 0.28 +0.1
4,131,697 + HP15_3901 0.41 -0.7
4,131,704 + HP15_3901 0.42 -1.9
4,131,726 - HP15_3901 0.43 +0.8
4,131,782 - HP15_3901 0.47 +0.9
4,131,802 + HP15_3901 0.49 +0.6
4,131,802 + HP15_3901 0.49 +2.0
4,131,810 - HP15_3901 0.49 +3.1
4,131,812 + HP15_3901 0.50 -1.0
4,131,860 - HP15_3901 0.53 +0.3
4,131,923 + HP15_3901 0.57 -0.6
4,131,965 - HP15_3901 0.60 -0.3
4,132,036 - HP15_3901 0.65 -0.3
4,132,178 - HP15_3901 0.75 -0.2
4,132,203 - HP15_3901 0.77 +0.4
4,132,262 + HP15_3901 0.81 -0.3
4,132,262 + HP15_3901 0.81 -0.1
4,132,270 - HP15_3901 0.82 +0.1
4,132,270 - HP15_3901 0.82 -0.1
4,132,282 + HP15_3901 0.83 +0.3
4,132,318 + HP15_3901 0.85 +1.1
4,132,318 + HP15_3901 0.85 +0.3
4,132,318 + HP15_3901 0.85 -0.1
4,132,318 + HP15_3901 0.85 +0.3
4,132,318 + HP15_3901 0.85 -0.5
4,132,326 - HP15_3901 0.86 +0.4
4,132,345 - HP15_3901 0.87 -0.7
4,132,350 - HP15_3901 0.87 -0.2
4,132,372 - HP15_3901 0.89 +1.8
4,132,425 + -0.2
4,132,532 - +0.2
4,132,539 + -0.4
4,132,614 - -0.5
4,132,716 + HP15_3902 0.37 -0.7
4,132,719 - HP15_3902 0.39 +0.0
4,132,919 + HP15_3903 0.11 -1.5
4,132,963 + HP15_3903 0.16 +0.0
4,133,010 + HP15_3903 0.21 +0.2
4,133,017 - HP15_3903 0.22 -0.5
4,133,400 + HP15_3903 0.63 -0.7
4,133,409 - HP15_3903 0.64 -2.8
4,133,480 + HP15_3903 0.71 -1.1
4,133,514 - HP15_3903 0.75 +0.2

Or see this region's nucleotide sequence